This page contains information for Module260, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
GRMZM2G120674 | Module260 | AT2G02760 | UBC2 | ubiquiting-conjugating enzyme 2 | ubiquiting-conjugating enzyme 2 | ||
GRMZM2G003963 | Module260 | AT5G45410 | AT5G45410 | ||||
GRMZM2G096709 | grftf3 | Module260 | AT4G37740 | GRF2 | growth-regulating factor 2 | growth-regulating factor 2 | GRF |
GRMZM2G133675 | Module260 | AT3G47640 | PYE | POPEYE | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | bHLH | |
GRMZM2G061906 | bhlh118 | Module260 | AT5G54680 | ILR3 | iaa-leucine resistant3 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | bHLH |
GRMZM2G128518 | Module260 | AT1G68490 | AT1G68490 | ||||
GRMZM2G158496 | Module260 | AT1G67410 | AT1G67410 | Exostosin family protein | |||
GRMZM2G170013 | nyc1 | Module260 | AT4G13250 | NYC1 | NON-YELLOW COLORING 1 | NAD(P)-binding Rossmann-fold superfamily protein | |
GRMZM2G325575 | fer1 | Module260 | AT2G40300 | FER4 | ferritin 4 | ferritin 4 | |
GRMZM2G046186 | Module260 | AT5G51720 | NEET | NEET group protein | 2 iron, 2 sulfur cluster binding | ||
GRMZM2G147266 | fer2 | Module260 | AT2G38320 | TBL34 | TRICHOME BIREFRINGENCE-LIKE 34 | TRICHOME BIREFRINGENCE-LIKE 34 | |
GRMZM2G394410 | Module260 | AT4G25030 | AT4G25030 | ||||
GRMZM5G862488 | Module260 | AT2G23420 | NAPRT2 | nicotinate phosphoribosyltransferase 2 | nicotinate phosphoribosyltransferase 2 |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module260 | 13 | 1 | GO:0055072 | biological_process | iron ion homeostasis | 1.50E-05 | 2 | 14 |
Module260 | 13 | 2 | GO:0048366 | biological_process | leaf development | 5.52E-05 | 3 | 192 |
Module260 | 13 | 3 | GO:0055076 | biological_process | transition metal ion homeostasis | 0.000103383 | 2 | 36 |
Module260 | 13 | 4 | GO:0048827 | biological_process | phyllome development | 0.000158906 | 3 | 274 |
Module260 | 13 | 5 | GO:0055065 | biological_process | metal ion homeostasis | 0.000339371 | 2 | 65 |
Module260 | 13 | 6 | GO:0055080 | biological_process | cation homeostasis | 0.000404968 | 2 | 71 |
Module260 | 13 | 7 | GO:0098771 | biological_process | inorganic ion homeostasis | 0.000540027 | 2 | 82 |
Module260 | 13 | 8 | GO:0050801 | biological_process | ion homeostasis | 0.000694127 | 2 | 93 |
Module260 | 13 | 9 | GO:0048367 | biological_process | shoot system development | 0.000880289 | 3 | 490 |
Module260 | 13 | 10 | GO:0046497 | biological_process | nicotinate nucleotide metabolic process | 0.000890307 | 1 | 2 |
Module260 | 13 | 11 | GO:0019357 | biological_process | nicotinate nucleotide biosynthetic process | 0.000890307 | 1 | 2 |
Module260 | 13 | 12 | GO:0019358 | biological_process | nicotinate nucleotide salvage | 0.000890307 | 1 | 2 |
Module260 | 13 | 13 | GO:0034256 | molecular_function | chlorophyll(ide) b reductase activity | 0.000975164 | 1 | 2 |
Module260 | 13 | 14 | GO:0099402 | biological_process | plant organ development | 0.001058848 | 3 | 522 |
Module260 | 13 | 15 | GO:0048878 | biological_process | chemical homeostasis | 0.001210169 | 2 | 123 |
Module260 | 13 | 16 | GO:0004516 | molecular_function | nicotinate phosphoribosyltransferase activity | 0.001462434 | 1 | 3 |
Module260 | 13 | 17 | GO:0016724 | molecular_function | oxidoreductase activity, oxidizing metal ions, oxygen as acceptor | 0.001462434 | 1 | 3 |
Module260 | 13 | 18 | GO:0004322 | molecular_function | ferroxidase activity | 0.001462434 | 1 | 3 |
Module260 | 13 | 19 | GO:0008199 | molecular_function | ferric iron binding | 0.001462434 | 1 | 3 |
Module260 | 13 | 20 | GO:0019365 | biological_process | pyridine nucleotide salvage | 0.001779953 | 1 | 4 |
Module260 | 13 | 21 | GO:0016722 | molecular_function | oxidoreductase activity, oxidizing metal ions | 0.001949495 | 1 | 4 |
Module260 | 13 | 22 | GO:0010304 | biological_process | PSII associated light-harvesting complex II catabolic process | 0.002224528 | 1 | 5 |
Module260 | 13 | 23 | GO:0004514 | molecular_function | nicotinate-nucleotide diphosphorylase (carboxylating) activity | 0.002436349 | 1 | 5 |
Module260 | 13 | 24 | GO:0016574 | biological_process | histone ubiquitination | 0.002668939 | 1 | 6 |
Module260 | 13 | 25 | GO:0033523 | biological_process | histone H2B ubiquitination | 0.002668939 | 1 | 6 |
Module260 | 13 | 26 | GO:0043173 | biological_process | nucleotide salvage | 0.003113184 | 1 | 7 |
Module260 | 13 | 27 | GO:0044257 | biological_process | cellular protein catabolic process | 0.003318036 | 2 | 205 |
Module260 | 13 | 28 | GO:0009650 | biological_process | UV protection | 0.003557265 | 1 | 8 |
Module260 | 13 | 29 | GO:0048513 | biological_process | animal organ development | 0.00426499 | 2 | 233 |
Module260 | 13 | 30 | GO:0044265 | biological_process | cellular macromolecule catabolic process | 0.0043009 | 2 | 234 |
Module260 | 13 | 31 | GO:0009435 | biological_process | NAD biosynthetic process | 0.004444931 | 1 | 10 |
Module260 | 13 | 32 | GO:0006879 | biological_process | cellular iron ion homeostasis | 0.004444931 | 1 | 10 |
Module260 | 13 | 33 | GO:0030163 | biological_process | protein catabolic process | 0.00444597 | 2 | 238 |
Module260 | 13 | 34 | GO:0048731 | biological_process | system development | 0.005924475 | 3 | 949 |
Module260 | 13 | 35 | GO:0042592 | biological_process | homeostatic process | 0.006625791 | 2 | 292 |
Module260 | 13 | 36 | GO:0009908 | biological_process | flower development | 0.006758823 | 2 | 295 |
Module260 | 13 | 37 | GO:0019359 | biological_process | nicotinamide nucleotide biosynthetic process | 0.007103978 | 1 | 16 |
Module260 | 13 | 38 | GO:0019674 | biological_process | NAD metabolic process | 0.007103978 | 1 | 16 |
Module260 | 13 | 39 | GO:0090567 | biological_process | reproductive shoot system development | 0.007349589 | 2 | 308 |
Module260 | 13 | 40 | GO:0046916 | biological_process | cellular transition metal ion homeostasis | 0.007546577 | 1 | 17 |
Module260 | 13 | 41 | GO:0015996 | biological_process | chlorophyll catabolic process | 0.007546577 | 1 | 17 |
Module260 | 13 | 42 | GO:0051186 | biological_process | cofactor metabolic process | 0.007915406 | 2 | 320 |
Module260 | 13 | 43 | GO:0046149 | biological_process | pigment catabolic process | 0.007989011 | 1 | 18 |
Module260 | 13 | 44 | GO:0019363 | biological_process | pyridine nucleotide biosynthetic process | 0.007989011 | 1 | 18 |
Module260 | 13 | 45 | GO:0009057 | biological_process | macromolecule catabolic process | 0.008254489 | 2 | 327 |
Module260 | 13 | 46 | GO:0051187 | biological_process | cofactor catabolic process | 0.008873386 | 1 | 20 |
Module260 | 13 | 47 | GO:0033015 | biological_process | tetrapyrrole catabolic process | 0.008873386 | 1 | 20 |
Module260 | 13 | 48 | GO:0006787 | biological_process | porphyrin-containing compound catabolic process | 0.008873386 | 1 | 20 |
Module260 | 13 | 49 | GO:0072525 | biological_process | pyridine-containing compound biosynthetic process | 0.01108145 | 1 | 25 |
Module260 | 13 | 50 | GO:0010039 | biological_process | response to iron ion | 0.01152257 | 1 | 26 |
Module260 | 13 | 51 | GO:0006826 | biological_process | iron ion transport | 0.012404319 | 1 | 28 |
Module260 | 13 | 52 | GO:0007275 | biological_process | multicellular organism development | 0.015806202 | 3 | 1347 |
Module260 | 13 | 53 | GO:0051537 | molecular_function | 2 iron, 2 sulfur cluster binding | 0.015984162 | 1 | 33 |
Module260 | 13 | 54 | GO:0006875 | biological_process | cellular metal ion homeostasis | 0.016364083 | 1 | 37 |
Module260 | 13 | 55 | GO:0044248 | biological_process | cellular catabolic process | 0.016653849 | 2 | 471 |
Module260 | 13 | 56 | GO:0030003 | biological_process | cellular cation homeostasis | 0.017242231 | 1 | 39 |
Module260 | 13 | 57 | GO:0044707 | biological_process | single-multicellular organism process | 0.01733972 | 3 | 1393 |
Module260 | 13 | 58 | GO:0043094 | biological_process | cellular metabolic compound salvage | 0.01768106 | 1 | 40 |
Module260 | 13 | 59 | GO:0065008 | biological_process | regulation of biological quality | 0.017748663 | 2 | 487 |
Module260 | 13 | 60 | GO:0048856 | biological_process | anatomical structure development | 0.017788671 | 3 | 1406 |
Module260 | 13 | 61 | GO:0009910 | biological_process | negative regulation of flower development | 0.018119726 | 1 | 41 |
Module260 | 13 | 62 | GO:0010150 | biological_process | leaf senescence | 0.018558229 | 1 | 42 |
Module260 | 13 | 63 | GO:0010260 | biological_process | organ senescence | 0.018996568 | 1 | 43 |
Module260 | 13 | 64 | GO:2000242 | biological_process | negative regulation of reproductive process | 0.019872757 | 1 | 45 |
Module260 | 13 | 65 | GO:0044237 | biological_process | cellular metabolic process | 0.020532266 | 6 | 7053 |
Module260 | 13 | 66 | GO:0015994 | biological_process | chlorophyll metabolic process | 0.020748294 | 1 | 47 |
Module260 | 13 | 67 | GO:0032501 | biological_process | multicellular organismal process | 0.020895579 | 3 | 1491 |
Module260 | 13 | 68 | GO:0006873 | biological_process | cellular ion homeostasis | 0.021185818 | 1 | 48 |
Module260 | 13 | 69 | GO:0016763 | molecular_function | transferase activity, transferring pentosyl groups | 0.0222193 | 1 | 46 |
Module260 | 13 | 70 | GO:0044767 | biological_process | single-organism developmental process | 0.022742869 | 3 | 1538 |
Module260 | 13 | 71 | GO:0065007 | biological_process | biological regulation | 0.022777603 | 4 | 2926 |
Module260 | 13 | 72 | GO:0048581 | biological_process | negative regulation of post-embryonic development | 0.023807543 | 1 | 54 |
Module260 | 13 | 73 | GO:0032502 | biological_process | developmental process | 0.024599103 | 3 | 1583 |
Module260 | 13 | 74 | GO:0055082 | biological_process | cellular chemical homeostasis | 0.025552106 | 1 | 58 |
Module260 | 13 | 75 | GO:0010043 | biological_process | response to zinc ion | 0.025552106 | 1 | 58 |
Module260 | 13 | 76 | GO:0051241 | biological_process | negative regulation of multicellular organismal process | 0.025987841 | 1 | 59 |
Module260 | 13 | 77 | GO:0042542 | biological_process | response to hydrogen peroxide | 0.025987841 | 1 | 59 |
Module260 | 13 | 78 | GO:0005739 | cellular_component | mitochondrion | 0.026188924 | 3 | 916 |
Module260 | 13 | 79 | GO:0046983 | molecular_function | protein dimerization activity | 0.026366023 | 2 | 538 |
Module260 | 13 | 80 | GO:0007568 | biological_process | aging | 0.026423413 | 1 | 60 |
Module260 | 13 | 81 | GO:1901575 | biological_process | organic substance catabolic process | 0.026510745 | 2 | 602 |
Module260 | 13 | 82 | GO:0000041 | biological_process | transition metal ion transport | 0.027294071 | 1 | 62 |
Module260 | 13 | 83 | GO:0072593 | biological_process | reactive oxygen species metabolic process | 0.027729156 | 1 | 63 |
Module260 | 13 | 84 | GO:0061458 | biological_process | reproductive system development | 0.028189133 | 2 | 622 |
Module260 | 13 | 85 | GO:0048608 | biological_process | reproductive structure development | 0.028189133 | 2 | 622 |
Module260 | 13 | 86 | GO:0051093 | biological_process | negative regulation of developmental process | 0.029467876 | 1 | 67 |
Module260 | 13 | 87 | GO:0046700 | biological_process | heterocycle catabolic process | 0.030336264 | 1 | 69 |
Module260 | 13 | 88 | GO:0009056 | biological_process | catabolic process | 0.030612889 | 2 | 650 |
Module260 | 13 | 89 | GO:0044270 | biological_process | cellular nitrogen compound catabolic process | 0.030770215 | 1 | 70 |
Module260 | 13 | 90 | GO:0009965 | biological_process | leaf morphogenesis | 0.032071098 | 1 | 73 |
Module260 | 13 | 91 | GO:0006778 | biological_process | porphyrin-containing compound metabolic process | 0.032504402 | 1 | 74 |
Module260 | 13 | 92 | GO:0009411 | biological_process | response to UV | 0.032937544 | 1 | 75 |
Module260 | 13 | 93 | GO:0033013 | biological_process | tetrapyrrole metabolic process | 0.034668498 | 1 | 79 |
Module260 | 13 | 94 | GO:0019439 | biological_process | aromatic compound catabolic process | 0.037691454 | 1 | 86 |
Module260 | 13 | 95 | GO:1990267 | biological_process | response to transition metal nanoparticle | 0.038553706 | 1 | 88 |
Module260 | 13 | 96 | GO:0003006 | biological_process | developmental process involved in reproduction | 0.039949416 | 2 | 750 |
Module260 | 13 | 97 | GO:1901361 | biological_process | organic cyclic compound catabolic process | 0.041136598 | 1 | 94 |
Module260 | 13 | 98 | GO:0044702 | biological_process | single organism reproductive process | 0.042342553 | 2 | 774 |
Module260 | 13 | 99 | GO:0010228 | biological_process | vegetative to reproductive phase transition of meristem | 0.043284588 | 1 | 99 |
Module260 | 13 | 100 | GO:0016570 | biological_process | histone modification | 0.044142661 | 1 | 101 |
Module260 | 13 | 101 | GO:0009108 | biological_process | coenzyme biosynthetic process | 0.045856883 | 1 | 105 |
Module260 | 13 | 102 | GO:0044435 | cellular_component | plastid part | 0.045927442 | 3 | 1135 |
Module260 | 13 | 103 | GO:0009791 | biological_process | post-embryonic development | 0.046247514 | 2 | 812 |
Module260 | 13 | 104 | GO:0016569 | biological_process | covalent chromatin modification | 0.046285038 | 1 | 106 |
Module260 | 13 | 105 | GO:0009909 | biological_process | regulation of flower development | 0.047568542 | 1 | 109 |
Module260 | 13 | 106 | GO:0009887 | biological_process | organ morphogenesis | 0.048423411 | 1 | 111 |
Module260 | 13 | 107 | GO:1901565 | biological_process | organonitrogen compound catabolic process | 0.049277641 | 1 | 113 |
Module260 | 13 | 108 | GO:0016881 | molecular_function | acid-amino acid ligase activity | 0.049618401 | 1 | 104 |
Module260 | 13 | 109 | GO:0010016 | biological_process | shoot system morphogenesis | 0.049704516 | 1 | 114 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
GRMZM2G120674 | GRMZM2G003963 | 0.0395 |
GRMZM2G120674 | grftf3 | 0.0351 |
GRMZM2G120674 | GRMZM2G133675 | 0.0586 |
GRMZM2G120674 | fer1 | 0.0482 |
GRMZM2G120674 | GRMZM5G862488 | 0.0357 |
GRMZM2G003963 | GRMZM2G133675 | 0.0512 |
GRMZM2G003963 | GRMZM2G158496 | 0.0395 |
GRMZM2G003963 | fer1 | 0.0387 |
GRMZM2G003963 | GRMZM2G394410 | 0.0374 |
GRMZM2G133675 | bhlh118 | 0.0429 |
GRMZM2G133675 | GRMZM2G128518 | 0.0353 |
GRMZM2G133675 | nyc1 | 0.0424 |
GRMZM2G133675 | fer1 | 0.1065 |
nyc1 | fer1 | 0.0623 |
fer1 | GRMZM2G046186 | 0.0396 |
fer1 | fer2 | 0.0807 |