This page contains information for Module272, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
GRMZM2G001799 | iaa41 | Module272 | AT4G14550 | IAA14 | indole-3-acetic acid inducible 14 | indole-3-acetic acid inducible 14 | AUX/IAA |
GRMZM2G000158 | iaa25 | Module272 | AT3G23030 | IAA2 | indole-3-acetic acid inducible 2 | indole-3-acetic acid inducible 2 | AUX/IAA |
GRMZM2G030465 | iaa24 | Module272 | AT2G33310 | IAA13 | auxin-induced protein 13 | auxin-induced protein 13 | AUX/IAA |
GRMZM2G033359 | Module272 | AT2G14960 | GH3.1 | Auxin-responsive GH3 family protein | |||
GRMZM2G048131 | iaa33 | Module272 | AT4G29080 | PAP2 | phytochrome-associated protein 2 | phytochrome-associated protein 2 | AUX/IAA |
GRMZM2G001426 | gras46 | Module272 | AT1G14920 | GAI | GIBBERELLIC ACID INSENSITIVE | GRAS family transcription factor family protein | GRAS |
GRMZM2G053338 | Module272 | AT2G14960 | GH3.1 | Auxin-responsive GH3 family protein | |||
GRMZM2G068701 | Module272 | AT2G14960 | GH3.1 | Auxin-responsive GH3 family protein | |||
GRMZM2G087955 | myb139 | Module272 | AT2G23290 | MYB70 | myb domain protein 70 | myb domain protein 70 | MYB |
GRMZM2G121700 | Module272 | AT1G14130 | AT1G14130 | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | |||
GRMZM2G127232 | Module272 | AT1G14130 | AT1G14130 | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | |||
GRMZM2G378106 | Module272 | AT2G14960 | GH3.1 | Auxin-responsive GH3 family protein |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module272 | 12 | 1 | GO:0009733 | biological_process | response to auxin | 2.69E-13 | 8 | 229 |
Module272 | 12 | 2 | GO:0010279 | molecular_function | indole-3-acetic acid amido synthetase activity | 6.52E-10 | 3 | 4 |
Module272 | 12 | 3 | GO:0009725 | biological_process | response to hormone | 5.46E-09 | 8 | 790 |
Module272 | 12 | 4 | GO:0009719 | biological_process | response to endogenous stimulus | 8.00E-09 | 8 | 829 |
Module272 | 12 | 5 | GO:0010033 | biological_process | response to organic substance | 2.57E-08 | 8 | 961 |
Module272 | 12 | 6 | GO:0009734 | biological_process | auxin-activated signaling pathway | 1.09E-06 | 4 | 117 |
Module272 | 12 | 7 | GO:0071365 | biological_process | cellular response to auxin stimulus | 1.29E-06 | 4 | 122 |
Module272 | 12 | 8 | GO:0042221 | biological_process | response to chemical | 2.06E-06 | 8 | 1681 |
Module272 | 12 | 9 | GO:0016881 | molecular_function | acid-amino acid ligase activity | 2.88E-05 | 3 | 104 |
Module272 | 12 | 10 | GO:0009755 | biological_process | hormone-mediated signaling pathway | 3.98E-05 | 4 | 290 |
Module272 | 12 | 11 | GO:0032870 | biological_process | cellular response to hormone stimulus | 5.57E-05 | 4 | 316 |
Module272 | 12 | 12 | GO:0071495 | biological_process | cellular response to endogenous stimulus | 5.92E-05 | 4 | 321 |
Module272 | 12 | 13 | GO:0016879 | molecular_function | ligase activity, forming carbon-nitrogen bonds | 0.000105862 | 3 | 161 |
Module272 | 12 | 14 | GO:0071310 | biological_process | cellular response to organic substance | 0.00011775 | 4 | 383 |
Module272 | 12 | 15 | GO:0046983 | molecular_function | protein dimerization activity | 0.000205241 | 4 | 538 |
Module272 | 12 | 16 | GO:0070887 | biological_process | cellular response to chemical stimulus | 0.000219514 | 4 | 450 |
Module272 | 12 | 17 | GO:0050896 | biological_process | response to stimulus | 0.000582445 | 8 | 3528 |
Module272 | 12 | 18 | GO:0016874 | molecular_function | ligase activity | 0.000726806 | 3 | 310 |
Module272 | 12 | 19 | GO:0005634 | cellular_component | nucleus | 0.000820191 | 6 | 2423 |
Module272 | 12 | 20 | GO:0007165 | biological_process | signal transduction | 0.001159692 | 4 | 697 |
Module272 | 12 | 21 | GO:0023052 | biological_process | signaling | 0.001216855 | 4 | 706 |
Module272 | 12 | 22 | GO:0044700 | biological_process | single organism signaling | 0.001216855 | 4 | 706 |
Module272 | 12 | 23 | GO:0016706 | molecular_function | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | 0.001479295 | 2 | 96 |
Module272 | 12 | 24 | GO:0034248 | biological_process | regulation of cellular amide metabolic process | 0.001518538 | 2 | 80 |
Module272 | 12 | 25 | GO:0006417 | biological_process | regulation of translation | 0.001518538 | 2 | 80 |
Module272 | 12 | 26 | GO:0007154 | biological_process | cell communication | 0.002567642 | 4 | 863 |
Module272 | 12 | 27 | GO:0051213 | molecular_function | dioxygenase activity | 0.002939545 | 2 | 136 |
Module272 | 12 | 28 | GO:0010608 | biological_process | posttranscriptional regulation of gene expression | 0.002949474 | 2 | 112 |
Module272 | 12 | 29 | GO:0032268 | biological_process | regulation of cellular protein metabolic process | 0.006661305 | 2 | 170 |
Module272 | 12 | 30 | GO:0051716 | biological_process | cellular response to stimulus | 0.007263388 | 4 | 1149 |
Module272 | 12 | 31 | GO:0051246 | biological_process | regulation of protein metabolic process | 0.007521106 | 2 | 181 |
Module272 | 12 | 32 | GO:2001141 | biological_process | regulation of RNA biosynthetic process | 0.011038704 | 4 | 1293 |
Module272 | 12 | 33 | GO:0006355 | biological_process | regulation of transcription, DNA-templated | 0.011038704 | 4 | 1293 |
Module272 | 12 | 34 | GO:1903506 | biological_process | regulation of nucleic acid-templated transcription | 0.011038704 | 4 | 1293 |
Module272 | 12 | 35 | GO:0051252 | biological_process | regulation of RNA metabolic process | 0.011372163 | 4 | 1304 |
Module272 | 12 | 36 | GO:0019219 | biological_process | regulation of nucleobase-containing compound metabolic process | 0.012283584 | 4 | 1333 |
Module272 | 12 | 37 | GO:0010556 | biological_process | regulation of macromolecule biosynthetic process | 0.013653774 | 4 | 1374 |
Module272 | 12 | 38 | GO:2000112 | biological_process | regulation of cellular macromolecule biosynthetic process | 0.013653774 | 4 | 1374 |
Module272 | 12 | 39 | GO:0031326 | biological_process | regulation of cellular biosynthetic process | 0.014827871 | 4 | 1407 |
Module272 | 12 | 40 | GO:0051171 | biological_process | regulation of nitrogen compound metabolic process | 0.014901109 | 4 | 1409 |
Module272 | 12 | 41 | GO:0010468 | biological_process | regulation of gene expression | 0.015085252 | 4 | 1414 |
Module272 | 12 | 42 | GO:0097659 | biological_process | nucleic acid-templated transcription | 0.015085252 | 4 | 1414 |
Module272 | 12 | 43 | GO:0006351 | biological_process | transcription, DNA-templated | 0.015085252 | 4 | 1414 |
Module272 | 12 | 44 | GO:0032774 | biological_process | RNA biosynthetic process | 0.015270898 | 4 | 1419 |
Module272 | 12 | 45 | GO:0009889 | biological_process | regulation of biosynthetic process | 0.01538301 | 4 | 1422 |
Module272 | 12 | 46 | GO:0080090 | biological_process | regulation of primary metabolic process | 0.019657317 | 4 | 1527 |
Module272 | 12 | 47 | GO:0060255 | biological_process | regulation of macromolecule metabolic process | 0.019878244 | 4 | 1532 |
Module272 | 12 | 48 | GO:0031323 | biological_process | regulation of cellular metabolic process | 0.020869584 | 4 | 1554 |
Module272 | 12 | 49 | GO:0034654 | biological_process | nucleobase-containing compound biosynthetic process | 0.022996327 | 4 | 1599 |
Module272 | 12 | 50 | GO:0043231 | cellular_component | intracellular membrane-bounded organelle | 0.023189134 | 7 | 6165 |
Module272 | 12 | 51 | GO:0043227 | cellular_component | membrane-bounded organelle | 0.02321549 | 7 | 6166 |
Module272 | 12 | 52 | GO:0016705 | molecular_function | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 0.023778643 | 2 | 403 |
Module272 | 12 | 53 | GO:0019222 | biological_process | regulation of metabolic process | 0.03179454 | 4 | 1761 |
Module272 | 12 | 54 | GO:0018130 | biological_process | heterocycle biosynthetic process | 0.034440548 | 4 | 1804 |
Module272 | 12 | 55 | GO:0019438 | biological_process | aromatic compound biosynthetic process | 0.035266833 | 4 | 1817 |
Module272 | 12 | 56 | GO:0010200 | biological_process | response to chitin | 0.035783473 | 1 | 49 |
Module272 | 12 | 57 | GO:0016070 | biological_process | RNA metabolic process | 0.037686109 | 4 | 1854 |
Module272 | 12 | 58 | GO:0043229 | cellular_component | intracellular organelle | 0.039953268 | 7 | 6663 |
Module272 | 12 | 59 | GO:0043226 | cellular_component | organelle | 0.040037329 | 7 | 6665 |
Module272 | 12 | 60 | GO:1901362 | biological_process | organic cyclic compound biosynthetic process | 0.042539587 | 4 | 1924 |
Module272 | 12 | 61 | GO:0009416 | biological_process | response to light stimulus | 0.044157082 | 2 | 463 |
Module272 | 12 | 62 | GO:0048527 | biological_process | lateral root development | 0.044369176 | 1 | 61 |
Module272 | 12 | 63 | GO:0009314 | biological_process | response to radiation | 0.046611337 | 2 | 477 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
iaa41 | iaa25 | 0.1226 |
iaa41 | iaa24 | 0.0928 |
iaa41 | iaa33 | 0.0779 |
iaa41 | GRMZM2G053338 | 0.075 |
iaa41 | myb139 | 0.0464 |
iaa41 | GRMZM2G121700 | 0.0665 |
iaa41 | GRMZM2G378106 | 0.0527 |
iaa25 | iaa24 | 0.0686 |
iaa25 | iaa33 | 0.0387 |
iaa25 | GRMZM2G053338 | 0.0555 |
iaa25 | GRMZM2G068701 | 0.0425 |
iaa25 | myb139 | 0.037 |
iaa25 | GRMZM2G378106 | 0.0442 |
iaa24 | GRMZM2G033359 | 0.0465 |
iaa24 | iaa33 | 0.0621 |
iaa24 | GRMZM2G053338 | 0.0679 |
iaa24 | GRMZM2G068701 | 0.0424 |
iaa24 | GRMZM2G121700 | 0.0745 |
iaa24 | GRMZM2G378106 | 0.0585 |
GRMZM2G033359 | GRMZM2G053338 | 0.0524 |
GRMZM2G033359 | GRMZM2G378106 | 0.0422 |
iaa33 | gras46 | 0.0537 |
iaa33 | GRMZM2G053338 | 0.0375 |
iaa33 | GRMZM2G068701 | 0.0402 |
iaa33 | GRMZM2G378106 | 0.045 |
GRMZM2G053338 | GRMZM2G068701 | 0.0747 |
GRMZM2G053338 | GRMZM2G378106 | 0.1287 |
GRMZM2G068701 | GRMZM2G378106 | 0.088 |
GRMZM2G121700 | GRMZM2G127232 | 0.0431 |
GRMZM2G121700 | GRMZM2G378106 | 0.0672 |