This page contains information for Module278, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
GRMZM2G008263 | gbss1b | Module278 | AT1G32900 | GBSS1 | granule bound starch synthase 1 | UDP-Glycosyltransferase superfamily protein | |
GRMZM2G056093 | Module278 | AT5G20190 | AT5G20190 | Tetratricopeptide repeat (TPR)-like superfamily protein | |||
GRMZM2G073054 | sbe3 | Module278 | AT5G03650 | SBE2.2 | starch branching enzyme 2.2 | starch branching enzyme 2.2 | |
GRMZM2G009223 | Module278 | AT1G61800 | GPT2 | glucose-6-phosphate/phosphate translocator 2 | glucose-6-phosphate/phosphate translocator 2 | ||
GRMZM2G027955 | agp2 | Module278 | AT1G27680 | APL2 | ADPGLC-PPase large subunit | ADPGLC-PPase large subunit | |
GRMZM2G125850 | Module278 | AT1G61800 | GPT2 | glucose-6-phosphate/phosphate translocator 2 | glucose-6-phosphate/phosphate translocator 2 | ||
GRMZM2G126026 | Module278 | AT5G53420 | AT5G53420 | CCT motif family protein | Orphans | ||
GRMZM2G129451 | ss1 | Module278 | AT5G24300 | SS1 | starch synthase 1 | Glycogen/starch synthases, ADP-glucose type | |
GRMZM2G018006 | acs3 | Module278 | AT5G51690 | ACS12 | 1-amino-cyclopropane-1-carboxylate synthase 12 | 1-amino-cyclopropane-1-carboxylate synthase 12 | |
GRMZM2G147544 | Module278 | AT2G29670 | AT2G29670 | Tetratricopeptide repeat (TPR)-like superfamily protein | |||
GRMZM2G177518 | Module278 | AT2G29670 | AT2G29670 | Tetratricopeptide repeat (TPR)-like superfamily protein | |||
GRMZM2G412611 | Module278 | AT1G10760 | SEX1 | STARCH EXCESS 1 | Pyruvate phosphate dikinase, PEP/pyruvate binding domain |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module278 | 12 | 1 | GO:0006073 | biological_process | cellular glucan metabolic process | 1.84E-08 | 5 | 174 |
Module278 | 12 | 2 | GO:0044042 | biological_process | glucan metabolic process | 1.84E-08 | 5 | 174 |
Module278 | 12 | 3 | GO:0044264 | biological_process | cellular polysaccharide metabolic process | 3.70E-08 | 5 | 200 |
Module278 | 12 | 4 | GO:0005976 | biological_process | polysaccharide metabolic process | 8.65E-08 | 5 | 237 |
Module278 | 12 | 5 | GO:0009250 | biological_process | glucan biosynthetic process | 2.03E-07 | 4 | 101 |
Module278 | 12 | 6 | GO:0044262 | biological_process | cellular carbohydrate metabolic process | 3.81E-07 | 5 | 319 |
Module278 | 12 | 7 | GO:0033692 | biological_process | cellular polysaccharide biosynthetic process | 5.45E-07 | 4 | 129 |
Module278 | 12 | 8 | GO:0000271 | biological_process | polysaccharide biosynthetic process | 6.16E-07 | 4 | 133 |
Module278 | 12 | 9 | GO:0034637 | biological_process | cellular carbohydrate biosynthetic process | 1.85E-06 | 4 | 175 |
Module278 | 12 | 10 | GO:0005982 | biological_process | starch metabolic process | 2.82E-06 | 3 | 51 |
Module278 | 12 | 11 | GO:0016051 | biological_process | carbohydrate biosynthetic process | 5.12E-06 | 4 | 226 |
Module278 | 12 | 12 | GO:0005977 | biological_process | glycogen metabolic process | 1.38E-05 | 2 | 10 |
Module278 | 12 | 13 | GO:0005978 | biological_process | glycogen biosynthetic process | 1.38E-05 | 2 | 10 |
Module278 | 12 | 14 | GO:0006112 | biological_process | energy reserve metabolic process | 1.38E-05 | 2 | 10 |
Module278 | 12 | 15 | GO:0009011 | molecular_function | starch synthase activity | 1.76E-05 | 2 | 9 |
Module278 | 12 | 16 | GO:0005975 | biological_process | carbohydrate metabolic process | 8.23E-05 | 5 | 954 |
Module278 | 12 | 17 | GO:0044723 | biological_process | single-organism carbohydrate metabolic process | 0.000131538 | 4 | 516 |
Module278 | 12 | 18 | GO:0009507 | cellular_component | chloroplast | 0.000296252 | 6 | 2032 |
Module278 | 12 | 19 | GO:0009536 | cellular_component | plastid | 0.000401192 | 6 | 2141 |
Module278 | 12 | 20 | GO:0010170 | cellular_component | glucose-1-phosphate adenylyltransferase complex | 0.00132626 | 1 | 2 |
Module278 | 12 | 21 | GO:1902503 | cellular_component | adenylyltransferase complex | 0.00132626 | 1 | 2 |
Module278 | 12 | 22 | GO:0015980 | biological_process | energy derivation by oxidation of organic compounds | 0.00175836 | 2 | 109 |
Module278 | 12 | 23 | GO:0015717 | biological_process | triose phosphate transport | 0.001780019 | 1 | 3 |
Module278 | 12 | 24 | GO:0035436 | biological_process | triose phosphate transmembrane transport | 0.001780019 | 1 | 3 |
Module278 | 12 | 25 | GO:0071917 | molecular_function | triose-phosphate transmembrane transporter activity | 0.002193115 | 1 | 3 |
Module278 | 12 | 26 | GO:0016781 | molecular_function | phosphotransferase activity, paired acceptors | 0.002193115 | 1 | 3 |
Module278 | 12 | 27 | GO:0003844 | molecular_function | 1,4-alpha-glucan branching enzyme activity | 0.002193115 | 1 | 3 |
Module278 | 12 | 28 | GO:0046527 | molecular_function | glucosyltransferase activity | 0.002242454 | 2 | 98 |
Module278 | 12 | 29 | GO:0015713 | biological_process | phosphoglycerate transport | 0.002372742 | 1 | 4 |
Module278 | 12 | 30 | GO:2000896 | biological_process | amylopectin metabolic process | 0.002372742 | 1 | 4 |
Module278 | 12 | 31 | GO:0010021 | biological_process | amylopectin biosynthetic process | 0.002372742 | 1 | 4 |
Module278 | 12 | 32 | GO:0004069 | molecular_function | L-aspartate:2-oxoglutarate aminotransferase activity | 0.002923173 | 1 | 4 |
Module278 | 12 | 33 | GO:0015120 | molecular_function | phosphoglycerate transmembrane transporter activity | 0.002923173 | 1 | 4 |
Module278 | 12 | 34 | GO:0042873 | biological_process | aldonate transport | 0.002965157 | 1 | 5 |
Module278 | 12 | 35 | GO:0044434 | cellular_component | chloroplast part | 0.003359327 | 4 | 1117 |
Module278 | 12 | 36 | GO:0044435 | cellular_component | plastid part | 0.0035656 | 4 | 1135 |
Module278 | 12 | 37 | GO:0016758 | molecular_function | transferase activity, transferring hexosyl groups | 0.003634299 | 3 | 445 |
Module278 | 12 | 38 | GO:0042879 | molecular_function | aldonate transmembrane transporter activity | 0.003652742 | 1 | 5 |
Module278 | 12 | 39 | GO:0044711 | biological_process | single-organism biosynthetic process | 0.003732874 | 4 | 1244 |
Module278 | 12 | 40 | GO:0009501 | cellular_component | amyloplast | 0.004635315 | 1 | 7 |
Module278 | 12 | 41 | GO:0008878 | molecular_function | glucose-1-phosphate adenylyltransferase activity | 0.005110411 | 1 | 7 |
Module278 | 12 | 42 | GO:0009570 | cellular_component | chloroplast stroma | 0.005566513 | 3 | 607 |
Module278 | 12 | 43 | GO:0009532 | cellular_component | plastid stroma | 0.005963784 | 3 | 622 |
Module278 | 12 | 44 | GO:0009610 | biological_process | response to symbiotic fungus | 0.007103452 | 1 | 12 |
Module278 | 12 | 45 | GO:0016757 | molecular_function | transferase activity, transferring glycosyl groups | 0.007511045 | 3 | 577 |
Module278 | 12 | 46 | GO:0009608 | biological_process | response to symbiont | 0.007693408 | 1 | 13 |
Module278 | 12 | 47 | GO:0015718 | biological_process | monocarboxylic acid transport | 0.008283058 | 1 | 14 |
Module278 | 12 | 48 | GO:0008028 | molecular_function | monocarboxylic acid transmembrane transporter activity | 0.008746035 | 1 | 12 |
Module278 | 12 | 49 | GO:0005983 | biological_process | starch catabolic process | 0.010050168 | 1 | 17 |
Module278 | 12 | 50 | GO:0019252 | biological_process | starch biosynthetic process | 0.010050168 | 1 | 17 |
Module278 | 12 | 51 | GO:0009251 | biological_process | glucan catabolic process | 0.01122671 | 1 | 19 |
Module278 | 12 | 52 | GO:0044247 | biological_process | cellular polysaccharide catabolic process | 0.01122671 | 1 | 19 |
Module278 | 12 | 53 | GO:0009631 | biological_process | cold acclimation | 0.011814522 | 1 | 20 |
Module278 | 12 | 54 | GO:0006091 | biological_process | generation of precursor metabolites and energy | 0.015980807 | 2 | 339 |
Module278 | 12 | 55 | GO:0044275 | biological_process | cellular carbohydrate catabolic process | 0.017675846 | 1 | 30 |
Module278 | 12 | 56 | GO:0070566 | molecular_function | adenylyltransferase activity | 0.019579962 | 1 | 27 |
Module278 | 12 | 57 | GO:0016740 | molecular_function | transferase activity | 0.020381246 | 6 | 3316 |
Module278 | 12 | 58 | GO:1901264 | biological_process | carbohydrate derivative transport | 0.025250076 | 1 | 43 |
Module278 | 12 | 59 | GO:0015605 | molecular_function | organophosphate ester transmembrane transporter activity | 0.025313571 | 1 | 35 |
Module278 | 12 | 60 | GO:0000272 | biological_process | polysaccharide catabolic process | 0.026990701 | 1 | 46 |
Module278 | 12 | 61 | GO:1901476 | molecular_function | carbohydrate transporter activity | 0.028168835 | 1 | 39 |
Module278 | 12 | 62 | GO:0015144 | molecular_function | carbohydrate transmembrane transporter activity | 0.028168835 | 1 | 39 |
Module278 | 12 | 63 | GO:0044763 | biological_process | single-organism cellular process | 0.028872246 | 6 | 4840 |
Module278 | 12 | 64 | GO:0015748 | biological_process | organophosphate ester transport | 0.032196267 | 1 | 55 |
Module278 | 12 | 65 | GO:1901505 | molecular_function | carbohydrate derivative transporter activity | 0.033856373 | 1 | 47 |
Module278 | 12 | 66 | GO:0016769 | molecular_function | transferase activity, transferring nitrogenous groups | 0.034565165 | 1 | 48 |
Module278 | 12 | 67 | GO:0008483 | molecular_function | transaminase activity | 0.034565165 | 1 | 48 |
Module278 | 12 | 68 | GO:1901677 | molecular_function | phosphate transmembrane transporter activity | 0.036688685 | 1 | 51 |
Module278 | 12 | 69 | GO:0005342 | molecular_function | organic acid transmembrane transporter activity | 0.037395573 | 1 | 52 |
Module278 | 12 | 70 | GO:0046943 | molecular_function | carboxylic acid transmembrane transporter activity | 0.037395573 | 1 | 52 |
Module278 | 12 | 71 | GO:0008643 | biological_process | carbohydrate transport | 0.040245381 | 1 | 69 |
Module278 | 12 | 72 | GO:0046942 | biological_process | carboxylic acid transport | 0.04196255 | 1 | 72 |
Module278 | 12 | 73 | GO:0015849 | biological_process | organic acid transport | 0.04196255 | 1 | 72 |
Module278 | 12 | 74 | GO:0009058 | biological_process | biosynthetic process | 0.043104441 | 5 | 3760 |
Module278 | 12 | 75 | GO:0034645 | biological_process | cellular macromolecule biosynthetic process | 0.044304187 | 4 | 2507 |
Module278 | 12 | 76 | GO:0044710 | biological_process | single-organism metabolic process | 0.045117142 | 5 | 3802 |
Module278 | 12 | 77 | GO:0009059 | biological_process | macromolecule biosynthetic process | 0.045547591 | 4 | 2528 |
Module278 | 12 | 78 | GO:0061695 | cellular_component | transferase complex, transferring phosphorus-containing groups | 0.046805472 | 1 | 72 |
Module278 | 12 | 79 | GO:0009941 | cellular_component | chloroplast envelope | 0.047029768 | 2 | 545 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
gbss1b | sbe3 | 0.0568 |
gbss1b | GRMZM2G125850 | 0.0375 |
GRMZM2G056093 | GRMZM2G125850 | 0.0404 |
GRMZM2G056093 | GRMZM2G126026 | 0.0399 |
GRMZM2G056093 | GRMZM2G147544 | 0.0356 |
sbe3 | GRMZM2G009223 | 0.0486 |
sbe3 | agp2 | 0.0431 |
sbe3 | GRMZM2G125850 | 0.0642 |
sbe3 | GRMZM2G126026 | 0.0405 |
GRMZM2G009223 | GRMZM2G125850 | 0.0766 |
GRMZM2G009223 | GRMZM2G147544 | 0.0424 |
GRMZM2G125850 | GRMZM2G126026 | 0.0452 |
GRMZM2G125850 | ss1 | 0.0353 |
GRMZM2G125850 | GRMZM2G147544 | 0.0502 |
ss1 | acs3 | 0.0359 |
GRMZM2G147544 | GRMZM2G177518 | 0.0566 |
GRMZM2G147544 | GRMZM2G412611 | 0.0372 |