This page contains information for Module288, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
GRMZM2G009948 | Module288 | AT1G69680 | AT1G69680 | Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein | |||
GRMZM2G053898 | sumo1a | Module288 | AT4G26840 | SUMO1 | small ubiquitin-like modifier 1 | small ubiquitin-like modifier 1 | |
GRMZM2G082390 | sumo1b | Module288 | AT4G26840 | SUMO1 | small ubiquitin-like modifier 1 | small ubiquitin-like modifier 1 | |
GRMZM2G102471 | uce4 | Module288 | AT5G53300 | UBC10 | ubiquitin-conjugating enzyme 10 | ubiquitin-conjugating enzyme 10 | |
GRMZM2G113696 | eif5a | Module288 | AT1G13950 | ELF5A-1 | eukaryotic elongation factor 5A-1 | eukaryotic elongation factor 5A-1 | |
GRMZM2G144030 | tif5A | Module288 | AT1G13950 | ELF5A-1 | eukaryotic elongation factor 5A-1 | eukaryotic elongation factor 5A-1 | |
GRMZM2G157334 | Module288 | AT5G55190 | RAN3 | RAN GTPase 3 | RAN GTPase 3 | ||
GRMZM2G326111 | ppi1 | Module288 | AT2G21130 | AT2G21130 | Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein | ||
GRMZM2G354604 | Module288 | AT5G55190 | RAN3 | RAN GTPase 3 | RAN GTPase 3 | ||
GRMZM2G101502 | Module288 | AT3G58180 | AT3G58180 | ARM repeat superfamily protein | |||
GRMZM2G395844 | arf1 | Module288 | AT5G14670 | ARFA1B | ADP-ribosylation factor A1B | ADP-ribosylation factor A1B | |
GRMZM2G416184 | Module288 | AT4G31820 | ENP | ENHANCER OF PINOID | Phototropic-responsive NPH3 family protein |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module288 | 12 | 1 | GO:0018193 | biological_process | peptidyl-amino acid modification | 1.58E-08 | 5 | 144 |
Module288 | 12 | 2 | GO:0046686 | biological_process | response to cadmium ion | 8.23E-08 | 6 | 433 |
Module288 | 12 | 3 | GO:0018205 | biological_process | peptidyl-lysine modification | 1.15E-07 | 4 | 76 |
Module288 | 12 | 4 | GO:0010038 | biological_process | response to metal ion | 2.41E-07 | 6 | 519 |
Module288 | 12 | 5 | GO:0031386 | molecular_function | protein tag | 4.09E-07 | 2 | 2 |
Module288 | 12 | 6 | GO:0006452 | biological_process | translational frameshifting | 2.38E-06 | 2 | 4 |
Module288 | 12 | 7 | GO:0006449 | biological_process | regulation of translational termination | 2.38E-06 | 2 | 4 |
Module288 | 12 | 8 | GO:0045901 | biological_process | positive regulation of translational elongation | 2.38E-06 | 2 | 4 |
Module288 | 12 | 9 | GO:0045905 | biological_process | positive regulation of translational termination | 2.38E-06 | 2 | 4 |
Module288 | 12 | 10 | GO:0010035 | biological_process | response to inorganic substance | 3.81E-06 | 6 | 829 |
Module288 | 12 | 11 | GO:0043243 | biological_process | positive regulation of protein complex disassembly | 3.96E-06 | 2 | 5 |
Module288 | 12 | 12 | GO:0016925 | biological_process | protein sumoylation | 3.96E-06 | 2 | 5 |
Module288 | 12 | 13 | GO:0008612 | biological_process | peptidyl-lysine modification to peptidyl-hypusine | 5.94E-06 | 2 | 6 |
Module288 | 12 | 14 | GO:0034250 | biological_process | positive regulation of cellular amide metabolic process | 1.78E-05 | 2 | 10 |
Module288 | 12 | 15 | GO:0045727 | biological_process | positive regulation of translation | 1.78E-05 | 2 | 10 |
Module288 | 12 | 16 | GO:0006448 | biological_process | regulation of translational elongation | 2.61E-05 | 2 | 12 |
Module288 | 12 | 17 | GO:0043022 | molecular_function | ribosome binding | 2.69E-05 | 2 | 12 |
Module288 | 12 | 18 | GO:0043244 | biological_process | regulation of protein complex disassembly | 3.08E-05 | 2 | 13 |
Module288 | 12 | 19 | GO:0043021 | molecular_function | ribonucleoprotein complex binding | 3.70E-05 | 2 | 14 |
Module288 | 12 | 20 | GO:0006415 | biological_process | translational termination | 4.73E-05 | 2 | 16 |
Module288 | 12 | 21 | GO:0010089 | biological_process | xylem development | 4.73E-05 | 2 | 16 |
Module288 | 12 | 22 | GO:0007264 | biological_process | small GTPase mediated signal transduction | 4.90E-05 | 3 | 115 |
Module288 | 12 | 23 | GO:0032270 | biological_process | positive regulation of cellular protein metabolic process | 0.000127795 | 2 | 26 |
Module288 | 12 | 24 | GO:0034050 | biological_process | host programmed cell death induced by symbiont | 0.000137971 | 2 | 27 |
Module288 | 12 | 25 | GO:0051247 | biological_process | positive regulation of protein metabolic process | 0.000148533 | 2 | 28 |
Module288 | 12 | 26 | GO:0050896 | biological_process | response to stimulus | 0.000151571 | 8 | 3528 |
Module288 | 12 | 27 | GO:0051130 | biological_process | positive regulation of cellular component organization | 0.00019463 | 2 | 32 |
Module288 | 12 | 28 | GO:0042221 | biological_process | response to chemical | 0.00022411 | 6 | 1681 |
Module288 | 12 | 29 | GO:0010087 | biological_process | phloem or xylem histogenesis | 0.000233235 | 2 | 35 |
Module288 | 12 | 30 | GO:0043624 | biological_process | cellular protein complex disassembly | 0.000246869 | 2 | 36 |
Module288 | 12 | 31 | GO:0043241 | biological_process | protein complex disassembly | 0.000290064 | 2 | 39 |
Module288 | 12 | 32 | GO:0051169 | biological_process | nuclear transport | 0.000290064 | 2 | 39 |
Module288 | 12 | 33 | GO:0006913 | biological_process | nucleocytoplasmic transport | 0.000290064 | 2 | 39 |
Module288 | 12 | 34 | GO:0032984 | biological_process | macromolecular complex disassembly | 0.000290064 | 2 | 39 |
Module288 | 12 | 35 | GO:0022411 | biological_process | cellular component disassembly | 0.000305224 | 2 | 40 |
Module288 | 12 | 36 | GO:0003746 | molecular_function | translation elongation factor activity | 0.000363658 | 2 | 43 |
Module288 | 12 | 37 | GO:0035556 | biological_process | intracellular signal transduction | 0.000443517 | 3 | 242 |
Module288 | 12 | 38 | GO:0032561 | molecular_function | guanyl ribonucleotide binding | 0.000659782 | 3 | 270 |
Module288 | 12 | 39 | GO:0005525 | molecular_function | GTP binding | 0.000659782 | 3 | 270 |
Module288 | 12 | 40 | GO:0019001 | molecular_function | guanyl nucleotide binding | 0.000666922 | 3 | 271 |
Module288 | 12 | 41 | GO:0006950 | biological_process | response to stress | 0.000710227 | 6 | 2065 |
Module288 | 12 | 42 | GO:0006414 | biological_process | translational elongation | 0.000782352 | 2 | 64 |
Module288 | 12 | 43 | GO:0010628 | biological_process | positive regulation of gene expression | 0.000989164 | 2 | 72 |
Module288 | 12 | 44 | GO:0012501 | biological_process | programmed cell death | 0.000989164 | 2 | 72 |
Module288 | 12 | 45 | GO:0010557 | biological_process | positive regulation of macromolecule biosynthetic process | 0.001044554 | 2 | 74 |
Module288 | 12 | 46 | GO:0031328 | biological_process | positive regulation of cellular biosynthetic process | 0.001101412 | 2 | 76 |
Module288 | 12 | 47 | GO:0051173 | biological_process | positive regulation of nitrogen compound metabolic process | 0.001159736 | 2 | 78 |
Module288 | 12 | 48 | GO:0009891 | biological_process | positive regulation of biosynthetic process | 0.001159736 | 2 | 78 |
Module288 | 12 | 49 | GO:0034248 | biological_process | regulation of cellular amide metabolic process | 0.001219523 | 2 | 80 |
Module288 | 12 | 50 | GO:0006417 | biological_process | regulation of translation | 0.001219523 | 2 | 80 |
Module288 | 12 | 51 | GO:0003743 | molecular_function | translation initiation factor activity | 0.001516444 | 2 | 88 |
Module288 | 12 | 52 | GO:0050794 | biological_process | regulation of cellular process | 0.001558094 | 6 | 2381 |
Module288 | 12 | 53 | GO:0006413 | biological_process | translational initiation | 0.001643561 | 2 | 93 |
Module288 | 12 | 54 | GO:0010604 | biological_process | positive regulation of macromolecule metabolic process | 0.001750081 | 2 | 96 |
Module288 | 12 | 55 | GO:0051090 | biological_process | regulation of sequence-specific DNA binding transcription factor activity | 0.002002373 | 1 | 3 |
Module288 | 12 | 56 | GO:0031325 | biological_process | positive regulation of cellular metabolic process | 0.002088961 | 2 | 105 |
Module288 | 12 | 57 | GO:0051128 | biological_process | regulation of cellular component organization | 0.002128395 | 2 | 106 |
Module288 | 12 | 58 | GO:0015031 | biological_process | protein transport | 0.002363264 | 3 | 431 |
Module288 | 12 | 59 | GO:0008219 | biological_process | cell death | 0.002372434 | 2 | 112 |
Module288 | 12 | 60 | GO:0016265 | biological_process | death | 0.002372434 | 2 | 112 |
Module288 | 12 | 61 | GO:0010608 | biological_process | posttranscriptional regulation of gene expression | 0.002372434 | 2 | 112 |
Module288 | 12 | 62 | GO:0045184 | biological_process | establishment of protein localization | 0.002426535 | 3 | 435 |
Module288 | 12 | 63 | GO:0008104 | biological_process | protein localization | 0.002741643 | 3 | 454 |
Module288 | 12 | 64 | GO:0048046 | cellular_component | apoplast | 0.002747947 | 3 | 356 |
Module288 | 12 | 65 | GO:0036211 | biological_process | protein modification process | 0.002924116 | 5 | 1748 |
Module288 | 12 | 66 | GO:0006464 | biological_process | cellular protein modification process | 0.002924116 | 5 | 1748 |
Module288 | 12 | 67 | GO:0003924 | molecular_function | GTPase activity | 0.003221883 | 2 | 129 |
Module288 | 12 | 68 | GO:0050789 | biological_process | regulation of biological process | 0.003412403 | 6 | 2751 |
Module288 | 12 | 69 | GO:0009893 | biological_process | positive regulation of metabolic process | 0.003626429 | 2 | 139 |
Module288 | 12 | 70 | GO:0044267 | biological_process | cellular protein metabolic process | 0.003631114 | 6 | 2783 |
Module288 | 12 | 71 | GO:0008135 | molecular_function | translation factor activity, RNA binding | 0.003781858 | 2 | 140 |
Module288 | 12 | 72 | GO:0043412 | biological_process | macromolecule modification | 0.003813468 | 5 | 1854 |
Module288 | 12 | 73 | GO:0032446 | biological_process | protein modification by small protein conjugation | 0.003992559 | 2 | 146 |
Module288 | 12 | 74 | GO:0009611 | biological_process | response to wounding | 0.004544433 | 2 | 156 |
Module288 | 12 | 75 | GO:0033036 | biological_process | macromolecule localization | 0.004555829 | 3 | 543 |
Module288 | 12 | 76 | GO:0009408 | biological_process | response to heat | 0.004601474 | 2 | 157 |
Module288 | 12 | 77 | GO:0065007 | biological_process | biological regulation | 0.00474685 | 6 | 2926 |
Module288 | 12 | 78 | GO:0070647 | biological_process | protein modification by small protein conjugation or removal | 0.004774608 | 2 | 160 |
Module288 | 12 | 79 | GO:0032268 | biological_process | regulation of cellular protein metabolic process | 0.005373397 | 2 | 170 |
Module288 | 12 | 80 | GO:0016482 | biological_process | cytoplasmic transport | 0.005812247 | 2 | 177 |
Module288 | 12 | 81 | GO:0051246 | biological_process | regulation of protein metabolic process | 0.006070245 | 2 | 181 |
Module288 | 12 | 82 | GO:0005634 | cellular_component | nucleus | 0.006379187 | 6 | 2423 |
Module288 | 12 | 83 | GO:0048522 | biological_process | positive regulation of cellular process | 0.006467033 | 2 | 187 |
Module288 | 12 | 84 | GO:0005576 | cellular_component | extracellular region | 0.008123831 | 3 | 523 |
Module288 | 12 | 85 | GO:0019538 | biological_process | protein metabolic process | 0.008146832 | 6 | 3241 |
Module288 | 12 | 86 | GO:0005794 | cellular_component | Golgi apparatus | 0.008968786 | 3 | 542 |
Module288 | 12 | 87 | GO:0007165 | biological_process | signal transduction | 0.009152712 | 3 | 697 |
Module288 | 12 | 88 | GO:0023052 | biological_process | signaling | 0.0094831 | 3 | 706 |
Module288 | 12 | 89 | GO:0044700 | biological_process | single organism signaling | 0.0094831 | 3 | 706 |
Module288 | 12 | 90 | GO:0071702 | biological_process | organic substance transport | 0.009896572 | 3 | 717 |
Module288 | 12 | 91 | GO:0009628 | biological_process | response to abiotic stimulus | 0.010186473 | 4 | 1427 |
Module288 | 12 | 92 | GO:0042742 | biological_process | defense response to bacterium | 0.010893299 | 2 | 245 |
Module288 | 12 | 93 | GO:0010286 | biological_process | heat acclimation | 0.014601512 | 1 | 22 |
Module288 | 12 | 94 | GO:0006886 | biological_process | intracellular protein transport | 0.015934648 | 2 | 299 |
Module288 | 12 | 95 | GO:0009617 | biological_process | response to bacterium | 0.015934648 | 2 | 299 |
Module288 | 12 | 96 | GO:0042277 | molecular_function | peptide binding | 0.015981257 | 1 | 24 |
Module288 | 12 | 97 | GO:0007154 | biological_process | cell communication | 0.01642392 | 3 | 863 |
Module288 | 12 | 98 | GO:0048518 | biological_process | positive regulation of biological process | 0.017484965 | 2 | 314 |
Module288 | 12 | 99 | GO:0033218 | molecular_function | amide binding | 0.017962503 | 1 | 27 |
Module288 | 12 | 100 | GO:0034613 | biological_process | cellular protein localization | 0.018122814 | 2 | 320 |
Module288 | 12 | 101 | GO:0070727 | biological_process | cellular macromolecule localization | 0.020096197 | 2 | 338 |
Module288 | 12 | 102 | GO:0009888 | biological_process | tissue development | 0.02054678 | 2 | 342 |
Module288 | 12 | 103 | GO:0071822 | biological_process | protein complex subunit organization | 0.022157843 | 2 | 356 |
Module288 | 12 | 104 | GO:0046907 | biological_process | intracellular transport | 0.026412159 | 2 | 391 |
Module288 | 12 | 105 | GO:0098542 | biological_process | defense response to other organism | 0.027045776 | 2 | 396 |
Module288 | 12 | 106 | GO:0000413 | biological_process | protein peptidyl-prolyl isomerization | 0.028362212 | 1 | 43 |
Module288 | 12 | 107 | GO:0018208 | biological_process | peptidyl-proline modification | 0.030314017 | 1 | 46 |
Module288 | 12 | 108 | GO:0044877 | molecular_function | macromolecular complex binding | 0.030735288 | 2 | 419 |
Module288 | 12 | 109 | GO:0009266 | biological_process | response to temperature stimulus | 0.033864363 | 2 | 447 |
Module288 | 12 | 110 | GO:0051716 | biological_process | cellular response to stimulus | 0.035137879 | 3 | 1149 |
Module288 | 12 | 111 | GO:0003755 | molecular_function | peptidyl-prolyl cis-trans isomerase activity | 0.03692843 | 1 | 56 |
Module288 | 12 | 112 | GO:0009987 | biological_process | cellular process | 0.037324818 | 9 | 9353 |
Module288 | 12 | 113 | GO:0009651 | biological_process | response to salt stress | 0.037727555 | 2 | 474 |
Module288 | 12 | 114 | GO:0051649 | biological_process | establishment of localization in cell | 0.038756738 | 2 | 481 |
Module288 | 12 | 115 | GO:0016859 | molecular_function | cis-trans isomerase activity | 0.038871293 | 1 | 59 |
Module288 | 12 | 116 | GO:0043933 | biological_process | macromolecular complex subunit organization | 0.041910916 | 2 | 502 |
Module288 | 12 | 117 | GO:0045892 | biological_process | negative regulation of transcription, DNA-templated | 0.043879353 | 1 | 67 |
Module288 | 12 | 118 | GO:1903507 | biological_process | negative regulation of nucleic acid-templated transcription | 0.043879353 | 1 | 67 |
Module288 | 12 | 119 | GO:1902679 | biological_process | negative regulation of RNA biosynthetic process | 0.043879353 | 1 | 67 |
Module288 | 12 | 120 | GO:0006970 | biological_process | response to osmotic stress | 0.04422396 | 2 | 517 |
Module288 | 12 | 121 | GO:0051253 | biological_process | negative regulation of RNA metabolic process | 0.044521092 | 1 | 68 |
Module288 | 12 | 122 | GO:0051641 | biological_process | cellular localization | 0.045951354 | 2 | 528 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
GRMZM2G009948 | GRMZM2G157334 | 0.0369 |
sumo1a | sumo1b | 0.1285 |
sumo1a | uce4 | 0.0461 |
sumo1a | eif5a | 0.038 |
sumo1a | GRMZM2G157334 | 0.0355 |
sumo1a | arf1 | 0.0357 |
sumo1b | uce4 | 0.0584 |
sumo1b | ppi1 | 0.036 |
sumo1b | arf1 | 0.0365 |
uce4 | eif5a | 0.0359 |
uce4 | ppi1 | 0.0465 |
uce4 | arf1 | 0.0414 |
eif5a | tif5A | 0.0623 |
eif5a | GRMZM2G416184 | 0.0492 |
tif5A | GRMZM2G416184 | 0.0381 |
GRMZM2G157334 | GRMZM2G354604 | 0.051 |
GRMZM2G157334 | arf1 | 0.0452 |
ppi1 | GRMZM2G354604 | 0.0383 |
GRMZM2G354604 | GRMZM2G101502 | 0.0442 |
GRMZM2G354604 | arf1 | 0.0518 |