This page contains information for Module296, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
GRMZM2G081910 | Module296 | AT5G17840 | AT5G17840 | DnaJ/Hsp40 cysteine-rich domain superfamily protein | |||
GRMZM2G071714 | Module296 | AT2G20860 | LIP1 | lipoic acid synthase 1 | lipoic acid synthase 1 | ||
GRMZM2G136803 | Module296 | AT2G40840 | DPE2 | disproportionating enzyme 2 | disproportionating enzyme 2 | ||
GRMZM2G085577 | pho2 | Module296 | AT3G46970 | PHS2 | alpha-glucan phosphorylase 2 | alpha-glucan phosphorylase 2 | |
GRMZM2G125893 | Module296 | AT4G23900 | AT4G23900 | Nucleoside diphosphate kinase family protein | |||
GRMZM2G139852 | Module296 | AT2G35760 | AT2G35760 | Uncharacterised protein family (UPF0497) | |||
GRMZM2G152908 | sus1 | Module296 | AT3G43190 | SUS4 | sucrose synthase 4 | sucrose synthase 4 | |
GRMZM2G051677 | Module296 | AT4G10260 | AT4G10260 | pfkB-like carbohydrate kinase family protein | |||
GRMZM2G415359 | mdh4 | Module296 | AT5G43330 | c-NAD-MDH2 | cytosolic-NAD-dependent malate dehydrogenase 2 | Lactate/malate dehydrogenase family protein | |
GRMZM2G154595 | mdh2 | Module296 | AT1G53240 | mMDH1 | mitochondrial malate dehydrogenase 1 | Lactate/malate dehydrogenase family protein | |
GRMZM5G856653 | hex5 | Module296 | AT4G29130 | HXK1 | hexokinase 1 | hexokinase 1 | |
GRMZM2G079888 | sudh4 | Module296 | AT5G66760 | SDH1-1 | succinate dehydrogenase 1-1 | succinate dehydrogenase 1-1 |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module296 | 12 | 1 | GO:0005975 | biological_process | carbohydrate metabolic process | 8.66E-07 | 7 | 954 |
Module296 | 12 | 2 | GO:0044262 | biological_process | cellular carbohydrate metabolic process | 1.65E-06 | 5 | 319 |
Module296 | 12 | 3 | GO:0006099 | biological_process | tricarboxylic acid cycle | 2.45E-06 | 3 | 38 |
Module296 | 12 | 4 | GO:0006101 | biological_process | citrate metabolic process | 3.33E-06 | 3 | 42 |
Module296 | 12 | 5 | GO:0009060 | biological_process | aerobic respiration | 6.76E-06 | 3 | 53 |
Module296 | 12 | 6 | GO:0072350 | biological_process | tricarboxylic acid metabolic process | 7.16E-06 | 3 | 54 |
Module296 | 12 | 7 | GO:0030060 | molecular_function | L-malate dehydrogenase activity | 1.83E-05 | 2 | 10 |
Module296 | 12 | 8 | GO:0004396 | molecular_function | hexokinase activity | 1.83E-05 | 2 | 10 |
Module296 | 12 | 9 | GO:0045333 | biological_process | cellular respiration | 4.45E-05 | 3 | 99 |
Module296 | 12 | 10 | GO:0015980 | biological_process | energy derivation by oxidation of organic compounds | 5.93E-05 | 3 | 109 |
Module296 | 12 | 11 | GO:0016615 | molecular_function | malate dehydrogenase activity | 6.22E-05 | 2 | 18 |
Module296 | 12 | 12 | GO:0006091 | biological_process | generation of precursor metabolites and energy | 7.33E-05 | 4 | 339 |
Module296 | 12 | 13 | GO:0006108 | biological_process | malate metabolic process | 7.54E-05 | 2 | 18 |
Module296 | 12 | 14 | GO:0044710 | biological_process | single-organism metabolic process | 8.40E-05 | 9 | 3802 |
Module296 | 12 | 15 | GO:0046686 | biological_process | response to cadmium ion | 0.000189243 | 4 | 433 |
Module296 | 12 | 16 | GO:0044281 | biological_process | small molecule metabolic process | 0.000248461 | 6 | 1482 |
Module296 | 12 | 17 | GO:0019752 | biological_process | carboxylic acid metabolic process | 0.000273894 | 5 | 918 |
Module296 | 12 | 18 | GO:0043436 | biological_process | oxoacid metabolic process | 0.000297114 | 5 | 934 |
Module296 | 12 | 19 | GO:0019200 | molecular_function | carbohydrate kinase activity | 0.000298854 | 2 | 39 |
Module296 | 12 | 20 | GO:0006082 | biological_process | organic acid metabolic process | 0.00030012 | 5 | 936 |
Module296 | 12 | 21 | GO:0044723 | biological_process | single-organism carbohydrate metabolic process | 0.000371115 | 4 | 516 |
Module296 | 12 | 22 | GO:0010038 | biological_process | response to metal ion | 0.000379431 | 4 | 519 |
Module296 | 12 | 23 | GO:0044763 | biological_process | single-organism cellular process | 0.000670145 | 9 | 4840 |
Module296 | 12 | 24 | GO:0043648 | biological_process | dicarboxylic acid metabolic process | 0.001165134 | 2 | 70 |
Module296 | 12 | 25 | GO:0005984 | biological_process | disaccharide metabolic process | 0.001266391 | 2 | 73 |
Module296 | 12 | 26 | GO:0008184 | molecular_function | glycogen phosphorylase activity | 0.001340727 | 1 | 2 |
Module296 | 12 | 27 | GO:0010297 | molecular_function | heteropolysaccharide binding | 0.001340727 | 1 | 2 |
Module296 | 12 | 28 | GO:0000025 | biological_process | maltose catabolic process | 0.001483624 | 1 | 2 |
Module296 | 12 | 29 | GO:0009413 | biological_process | response to flooding | 0.001483624 | 1 | 2 |
Module296 | 12 | 30 | GO:0009311 | biological_process | oligosaccharide metabolic process | 0.001875137 | 2 | 89 |
Module296 | 12 | 31 | GO:0006165 | biological_process | nucleoside diphosphate phosphorylation | 0.001959297 | 2 | 91 |
Module296 | 12 | 32 | GO:0004645 | molecular_function | phosphorylase activity | 0.002010478 | 1 | 3 |
Module296 | 12 | 33 | GO:0004134 | molecular_function | 4-alpha-glucanotransferase activity | 0.002010478 | 1 | 3 |
Module296 | 12 | 34 | GO:0016740 | molecular_function | transferase activity | 0.002091098 | 7 | 3316 |
Module296 | 12 | 35 | GO:0009132 | biological_process | nucleoside diphosphate metabolic process | 0.002132945 | 2 | 95 |
Module296 | 12 | 36 | GO:0010035 | biological_process | response to inorganic substance | 0.002213394 | 4 | 829 |
Module296 | 12 | 37 | GO:0044238 | biological_process | primary metabolic process | 0.002370901 | 10 | 7365 |
Module296 | 12 | 38 | GO:0044724 | biological_process | single-organism carbohydrate catabolic process | 0.002453836 | 2 | 102 |
Module296 | 12 | 39 | GO:0046939 | biological_process | nucleotide phosphorylation | 0.002501436 | 2 | 103 |
Module296 | 12 | 40 | GO:0016758 | molecular_function | transferase activity, transferring hexosyl groups | 0.002781334 | 3 | 445 |
Module296 | 12 | 41 | GO:0016157 | molecular_function | sucrose synthase activity | 0.003348755 | 1 | 5 |
Module296 | 12 | 42 | GO:0000023 | biological_process | maltose metabolic process | 0.003705346 | 1 | 5 |
Module296 | 12 | 43 | GO:0004133 | molecular_function | glycogen debranching enzyme activity | 0.004017281 | 1 | 6 |
Module296 | 12 | 44 | GO:0071704 | biological_process | organic substance metabolic process | 0.004193806 | 10 | 7797 |
Module296 | 12 | 45 | GO:0016052 | biological_process | carbohydrate catabolic process | 0.004629788 | 2 | 141 |
Module296 | 12 | 46 | GO:0016992 | molecular_function | lipoate synthase activity | 0.0046854 | 1 | 7 |
Module296 | 12 | 47 | GO:0016979 | molecular_function | lipoate-protein ligase activity | 0.0046854 | 1 | 7 |
Module296 | 12 | 48 | GO:0008865 | molecular_function | fructokinase activity | 0.0046854 | 1 | 7 |
Module296 | 12 | 49 | GO:0006970 | biological_process | response to osmotic stress | 0.005505626 | 3 | 517 |
Module296 | 12 | 50 | GO:0016757 | molecular_function | transferase activity, transferring glycosyl groups | 0.005782905 | 3 | 577 |
Module296 | 12 | 51 | GO:0004550 | molecular_function | nucleoside diphosphate kinase activity | 0.006020415 | 1 | 9 |
Module296 | 12 | 52 | GO:0070283 | molecular_function | radical SAM enzyme activity | 0.006020415 | 1 | 9 |
Module296 | 12 | 53 | GO:0016616 | molecular_function | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | 0.006104345 | 2 | 179 |
Module296 | 12 | 54 | GO:0010555 | biological_process | response to mannitol | 0.006660722 | 1 | 9 |
Module296 | 12 | 55 | GO:0006183 | biological_process | GTP biosynthetic process | 0.006660722 | 1 | 9 |
Module296 | 12 | 56 | GO:0006228 | biological_process | UTP biosynthetic process | 0.006660722 | 1 | 9 |
Module296 | 12 | 57 | GO:0009106 | biological_process | lipoate metabolic process | 0.006660722 | 1 | 9 |
Module296 | 12 | 58 | GO:0009107 | biological_process | lipoate biosynthetic process | 0.006660722 | 1 | 9 |
Module296 | 12 | 59 | GO:0046051 | biological_process | UTP metabolic process | 0.006660722 | 1 | 9 |
Module296 | 12 | 60 | GO:0046039 | biological_process | GTP metabolic process | 0.006660722 | 1 | 9 |
Module296 | 12 | 61 | GO:0016614 | molecular_function | oxidoreductase activity, acting on CH-OH group of donors | 0.007421282 | 2 | 198 |
Module296 | 12 | 62 | GO:0009144 | biological_process | purine nucleoside triphosphate metabolic process | 0.007601661 | 2 | 182 |
Module296 | 12 | 63 | GO:0009205 | biological_process | purine ribonucleoside triphosphate metabolic process | 0.007601661 | 2 | 182 |
Module296 | 12 | 64 | GO:0009199 | biological_process | ribonucleoside triphosphate metabolic process | 0.00776396 | 2 | 184 |
Module296 | 12 | 65 | GO:0009141 | biological_process | nucleoside triphosphate metabolic process | 0.00801037 | 2 | 187 |
Module296 | 12 | 66 | GO:0006241 | biological_process | CTP biosynthetic process | 0.008135449 | 1 | 11 |
Module296 | 12 | 67 | GO:0009148 | biological_process | pyrimidine nucleoside triphosphate biosynthetic process | 0.008135449 | 1 | 11 |
Module296 | 12 | 68 | GO:1901070 | biological_process | guanosine-containing compound biosynthetic process | 0.008135449 | 1 | 11 |
Module296 | 12 | 69 | GO:0009208 | biological_process | pyrimidine ribonucleoside triphosphate metabolic process | 0.008135449 | 1 | 11 |
Module296 | 12 | 70 | GO:0009209 | biological_process | pyrimidine ribonucleoside triphosphate biosynthetic process | 0.008135449 | 1 | 11 |
Module296 | 12 | 71 | GO:0046036 | biological_process | CTP metabolic process | 0.008135449 | 1 | 11 |
Module296 | 12 | 72 | GO:0009147 | biological_process | pyrimidine nucleoside triphosphate metabolic process | 0.008872073 | 1 | 12 |
Module296 | 12 | 73 | GO:0046352 | biological_process | disaccharide catabolic process | 0.008872073 | 1 | 12 |
Module296 | 12 | 74 | GO:0003824 | molecular_function | catalytic activity | 0.009273117 | 10 | 8627 |
Module296 | 12 | 75 | GO:0071944 | cellular_component | cell periphery | 0.009291575 | 5 | 2455 |
Module296 | 12 | 76 | GO:0016783 | molecular_function | sulfurtransferase activity | 0.009350834 | 1 | 14 |
Module296 | 12 | 77 | GO:0009313 | biological_process | oligosaccharide catabolic process | 0.009608205 | 1 | 13 |
Module296 | 12 | 78 | GO:0009150 | biological_process | purine ribonucleotide metabolic process | 0.011826043 | 2 | 229 |
Module296 | 12 | 79 | GO:0046128 | biological_process | purine ribonucleoside metabolic process | 0.011925053 | 2 | 230 |
Module296 | 12 | 80 | GO:0042278 | biological_process | purine nucleoside metabolic process | 0.012024435 | 2 | 231 |
Module296 | 12 | 81 | GO:0019252 | biological_process | starch biosynthetic process | 0.012547814 | 1 | 17 |
Module296 | 12 | 82 | GO:0006163 | biological_process | purine nucleotide metabolic process | 0.012730494 | 2 | 238 |
Module296 | 12 | 83 | GO:0009259 | biological_process | ribonucleotide metabolic process | 0.012832836 | 2 | 239 |
Module296 | 12 | 84 | GO:0009414 | biological_process | response to water deprivation | 0.013245882 | 2 | 243 |
Module296 | 12 | 85 | GO:1901265 | molecular_function | nucleoside phosphate binding | 0.013268654 | 6 | 3369 |
Module296 | 12 | 86 | GO:0000166 | molecular_function | nucleotide binding | 0.013268654 | 6 | 3369 |
Module296 | 12 | 87 | GO:0046132 | biological_process | pyrimidine ribonucleoside biosynthetic process | 0.013281488 | 1 | 18 |
Module296 | 12 | 88 | GO:0046134 | biological_process | pyrimidine nucleoside biosynthetic process | 0.013281488 | 1 | 18 |
Module296 | 12 | 89 | GO:0006732 | biological_process | coenzyme metabolic process | 0.01335006 | 2 | 244 |
Module296 | 12 | 90 | GO:0009119 | biological_process | ribonucleoside metabolic process | 0.013664783 | 2 | 247 |
Module296 | 12 | 91 | GO:0009220 | biological_process | pyrimidine ribonucleotide biosynthetic process | 0.014014672 | 1 | 19 |
Module296 | 12 | 92 | GO:0009218 | biological_process | pyrimidine ribonucleotide metabolic process | 0.014014672 | 1 | 19 |
Module296 | 12 | 93 | GO:0009415 | biological_process | response to water | 0.014196596 | 2 | 252 |
Module296 | 12 | 94 | GO:1901068 | biological_process | guanosine-containing compound metabolic process | 0.014747365 | 1 | 20 |
Module296 | 12 | 95 | GO:0044699 | biological_process | single-organism process | 0.014889155 | 9 | 7015 |
Module296 | 12 | 96 | GO:0036094 | molecular_function | small molecule binding | 0.014944285 | 6 | 3451 |
Module296 | 12 | 97 | GO:0009116 | biological_process | nucleoside metabolic process | 0.015398321 | 2 | 263 |
Module296 | 12 | 98 | GO:0044237 | biological_process | cellular metabolic process | 0.015556755 | 9 | 7053 |
Module296 | 12 | 99 | GO:0009628 | biological_process | response to abiotic stimulus | 0.015571073 | 4 | 1427 |
Module296 | 12 | 100 | GO:0016782 | molecular_function | transferase activity, transferring sulfur-containing groups | 0.015981257 | 1 | 24 |
Module296 | 12 | 101 | GO:0019693 | biological_process | ribose phosphate metabolic process | 0.016072021 | 2 | 269 |
Module296 | 12 | 102 | GO:0072521 | biological_process | purine-containing compound metabolic process | 0.016185545 | 2 | 270 |
Module296 | 12 | 103 | GO:0005739 | cellular_component | mitochondrion | 0.017481581 | 3 | 916 |
Module296 | 12 | 104 | GO:0046131 | biological_process | pyrimidine ribonucleoside metabolic process | 0.017673241 | 1 | 24 |
Module296 | 12 | 105 | GO:0006213 | biological_process | pyrimidine nucleoside metabolic process | 0.017673241 | 1 | 24 |
Module296 | 12 | 106 | GO:1901657 | biological_process | glycosyl compound metabolic process | 0.017811718 | 2 | 284 |
Module296 | 12 | 107 | GO:0001666 | biological_process | response to hypoxia | 0.018403487 | 1 | 25 |
Module296 | 12 | 108 | GO:0044712 | biological_process | single-organism catabolic process | 0.018771526 | 2 | 292 |
Module296 | 12 | 109 | GO:0036293 | biological_process | response to decreased oxygen levels | 0.020591294 | 1 | 28 |
Module296 | 12 | 110 | GO:0016776 | molecular_function | phosphotransferase activity, phosphate group as acceptor | 0.020598522 | 1 | 31 |
Module296 | 12 | 111 | GO:0009409 | biological_process | response to cold | 0.020630083 | 2 | 307 |
Module296 | 12 | 112 | GO:0048046 | cellular_component | apoplast | 0.021298229 | 2 | 356 |
Module296 | 12 | 113 | GO:0070482 | biological_process | response to oxygen levels | 0.021319587 | 1 | 29 |
Module296 | 12 | 114 | GO:0044275 | biological_process | cellular carbohydrate catabolic process | 0.022047393 | 1 | 30 |
Module296 | 12 | 115 | GO:0051186 | biological_process | cofactor metabolic process | 0.022301985 | 2 | 320 |
Module296 | 12 | 116 | GO:0006221 | biological_process | pyrimidine nucleotide biosynthetic process | 0.022774711 | 1 | 31 |
Module296 | 12 | 117 | GO:0006220 | biological_process | pyrimidine nucleotide metabolic process | 0.023501543 | 1 | 32 |
Module296 | 12 | 118 | GO:0009749 | biological_process | response to glucose | 0.023501543 | 1 | 32 |
Module296 | 12 | 119 | GO:0009117 | biological_process | nucleotide metabolic process | 0.023626037 | 2 | 330 |
Module296 | 12 | 120 | GO:0006753 | biological_process | nucleoside phosphate metabolic process | 0.024708714 | 2 | 338 |
Module296 | 12 | 121 | GO:0009746 | biological_process | response to hexose | 0.026404007 | 1 | 36 |
Module296 | 12 | 122 | GO:0019205 | molecular_function | nucleobase-containing compound kinase activity | 0.026506062 | 1 | 40 |
Module296 | 12 | 123 | GO:0005985 | biological_process | sucrose metabolic process | 0.027128409 | 1 | 37 |
Module296 | 12 | 124 | GO:0034284 | biological_process | response to monosaccharide | 0.027128409 | 1 | 37 |
Module296 | 12 | 125 | GO:0042221 | biological_process | response to chemical | 0.027222177 | 4 | 1681 |
Module296 | 12 | 126 | GO:0031072 | molecular_function | heat shock protein binding | 0.027814442 | 1 | 42 |
Module296 | 12 | 127 | GO:0051539 | molecular_function | 4 iron, 4 sulfur cluster binding | 0.029121222 | 1 | 44 |
Module296 | 12 | 128 | GO:0030247 | molecular_function | polysaccharide binding | 0.031078399 | 1 | 47 |
Module296 | 12 | 129 | GO:0001871 | molecular_function | pattern binding | 0.031078399 | 1 | 47 |
Module296 | 12 | 130 | GO:0055086 | biological_process | nucleobase-containing small molecule metabolic process | 0.031629046 | 2 | 386 |
Module296 | 12 | 131 | GO:0072528 | biological_process | pyrimidine-containing compound biosynthetic process | 0.032185654 | 1 | 44 |
Module296 | 12 | 132 | GO:0034285 | biological_process | response to disaccharide | 0.035064874 | 1 | 48 |
Module296 | 12 | 133 | GO:0009744 | biological_process | response to sucrose | 0.035064874 | 1 | 48 |
Module296 | 12 | 134 | GO:0043168 | molecular_function | anion binding | 0.035459149 | 5 | 2999 |
Module296 | 12 | 135 | GO:0032787 | biological_process | monocarboxylic acid metabolic process | 0.03551064 | 2 | 411 |
Module296 | 12 | 136 | GO:0005982 | biological_process | starch metabolic process | 0.037219227 | 1 | 51 |
Module296 | 12 | 137 | GO:0072527 | biological_process | pyrimidine-containing compound metabolic process | 0.038653056 | 1 | 53 |
Module296 | 12 | 138 | GO:0009266 | biological_process | response to temperature stimulus | 0.041416687 | 2 | 447 |
Module296 | 12 | 139 | GO:0050897 | molecular_function | cobalt ion binding | 0.042101481 | 1 | 64 |
Module296 | 12 | 140 | GO:0010043 | biological_process | response to zinc ion | 0.042229226 | 1 | 58 |
Module296 | 12 | 141 | GO:0008152 | biological_process | metabolic process | 0.042424679 | 10 | 9826 |
Module296 | 12 | 142 | GO:0009145 | biological_process | purine nucleoside triphosphate biosynthetic process | 0.042943021 | 1 | 59 |
Module296 | 12 | 143 | GO:0009206 | biological_process | purine ribonucleoside triphosphate biosynthetic process | 0.042943021 | 1 | 59 |
Module296 | 12 | 144 | GO:0009506 | cellular_component | plasmodesma | 0.04315523 | 2 | 520 |
Module296 | 12 | 145 | GO:0055044 | cellular_component | symplast | 0.04315523 | 2 | 520 |
Module296 | 12 | 146 | GO:0005911 | cellular_component | cell-cell junction | 0.04315523 | 2 | 520 |
Module296 | 12 | 147 | GO:0030054 | cellular_component | cell junction | 0.04315523 | 2 | 520 |
Module296 | 12 | 148 | GO:0005576 | cellular_component | extracellular region | 0.043613086 | 2 | 523 |
Module296 | 12 | 149 | GO:0009201 | biological_process | ribonucleoside triphosphate biosynthetic process | 0.044369176 | 1 | 61 |
Module296 | 12 | 150 | GO:0009142 | biological_process | nucleoside triphosphate biosynthetic process | 0.045793418 | 1 | 63 |
Module296 | 12 | 151 | GO:0048037 | molecular_function | cofactor binding | 0.045803332 | 2 | 521 |
Module296 | 12 | 152 | GO:0009651 | biological_process | response to salt stress | 0.046081053 | 2 | 474 |
Module296 | 12 | 153 | GO:0016627 | molecular_function | oxidoreductase activity, acting on the CH-CH group of donors | 0.046607166 | 1 | 71 |
Module296 | 12 | 154 | GO:0005524 | molecular_function | ATP binding | 0.049956699 | 4 | 2216 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
GRMZM2G081910 | GRMZM2G071714 | 0.0377 |
GRMZM2G071714 | hex5 | 0.0374 |
GRMZM2G136803 | pho2 | 0.072 |
GRMZM2G136803 | GRMZM2G125893 | 0.038 |
pho2 | hex5 | 0.0402 |
GRMZM2G125893 | hex5 | 0.0467 |
GRMZM2G139852 | sus1 | 0.0407 |
sus1 | GRMZM2G051677 | 0.0367 |
sus1 | hex5 | 0.0512 |
mdh4 | mdh2 | 0.0382 |
mdh2 | hex5 | 0.036 |
hex5 | sudh4 | 0.0423 |