This page contains information for Module308, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
GRMZM2G002220 | Module308 | AT2G04030 | CR88 | Chaperone protein htpG family protein | |||
GRMZM2G001500 | Module308 | AT4G24280 | cpHsc70-1 | chloroplast heat shock protein 70-1 | chloroplast heat shock protein 70-1 | ||
GRMZM2G083716 | Module308 | AT3G13470 | Cpn60beta2 | chaperonin-60beta2 | TCP-1/cpn60 chaperonin family protein | ||
AC215201.3_FG005 | cps2 | Module308 | AT2G28000 | CPN60A | chaperonin-60alpha | chaperonin-60alpha | |
GRMZM2G095252 | Module308 | AT1G55490 | CPN60B | chaperonin 60 beta | chaperonin 60 beta | ||
GRMZM2G091189 | Module308 | AT5G20720 | CPN20 | chaperonin 20 | chaperonin 20 | ||
GRMZM2G127609 | Module308 | AT5G20720 | CPN20 | chaperonin 20 | chaperonin 20 | ||
GRMZM2G133698 | Module308 | ||||||
GRMZM2G148106 | Module308 | AT1G12410 | CLP2 | CLP protease proteolytic subunit 2 | CLP protease proteolytic subunit 2 | ||
GRMZM2G399284 | Module308 | AT5G20720 | CPN20 | chaperonin 20 | chaperonin 20 | ||
GRMZM5G888696 | Module308 | AT1G06950 | TIC110 | translocon at the inner envelope membrane of chloroplasts 110 | translocon at the inner envelope membrane of chloroplasts 110 |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module308 | 11 | 1 | GO:0006457 | biological_process | protein folding | 5.62E-13 | 8 | 214 |
Module308 | 11 | 2 | GO:0009941 | cellular_component | chloroplast envelope | 1.23E-10 | 9 | 545 |
Module308 | 11 | 3 | GO:0009526 | cellular_component | plastid envelope | 1.78E-10 | 9 | 568 |
Module308 | 11 | 4 | GO:0031967 | cellular_component | organelle envelope | 6.11E-09 | 9 | 844 |
Module308 | 11 | 5 | GO:0031975 | cellular_component | envelope | 6.71E-09 | 9 | 853 |
Module308 | 11 | 6 | GO:0044434 | cellular_component | chloroplast part | 7.31E-08 | 9 | 1117 |
Module308 | 11 | 7 | GO:0044435 | cellular_component | plastid part | 8.41E-08 | 9 | 1135 |
Module308 | 11 | 8 | GO:0005524 | molecular_function | ATP binding | 1.30E-07 | 9 | 2216 |
Module308 | 11 | 9 | GO:0032559 | molecular_function | adenyl ribonucleotide binding | 1.68E-07 | 9 | 2282 |
Module308 | 11 | 10 | GO:0030554 | molecular_function | adenyl nucleotide binding | 1.71E-07 | 9 | 2286 |
Module308 | 11 | 11 | GO:0035639 | molecular_function | purine ribonucleoside triphosphate binding | 3.50E-07 | 9 | 2478 |
Module308 | 11 | 12 | GO:0032550 | molecular_function | purine ribonucleoside binding | 4.41E-07 | 9 | 2544 |
Module308 | 11 | 13 | GO:0032555 | molecular_function | purine ribonucleotide binding | 4.41E-07 | 9 | 2544 |
Module308 | 11 | 14 | GO:0001883 | molecular_function | purine nucleoside binding | 4.41E-07 | 9 | 2544 |
Module308 | 11 | 15 | GO:0032549 | molecular_function | ribonucleoside binding | 4.52E-07 | 9 | 2551 |
Module308 | 11 | 16 | GO:0017076 | molecular_function | purine nucleotide binding | 4.54E-07 | 9 | 2552 |
Module308 | 11 | 17 | GO:0001882 | molecular_function | nucleoside binding | 4.54E-07 | 9 | 2552 |
Module308 | 11 | 18 | GO:0032553 | molecular_function | ribonucleotide binding | 5.05E-07 | 9 | 2583 |
Module308 | 11 | 19 | GO:0009266 | biological_process | response to temperature stimulus | 5.17E-07 | 6 | 447 |
Module308 | 11 | 20 | GO:0009570 | cellular_component | chloroplast stroma | 5.42E-07 | 7 | 607 |
Module308 | 11 | 21 | GO:0097367 | molecular_function | carbohydrate derivative binding | 5.52E-07 | 9 | 2609 |
Module308 | 11 | 22 | GO:0048046 | cellular_component | apoplast | 5.66E-07 | 6 | 356 |
Module308 | 11 | 23 | GO:0009532 | cellular_component | plastid stroma | 6.41E-07 | 7 | 622 |
Module308 | 11 | 24 | GO:0045036 | biological_process | protein targeting to chloroplast | 9.22E-07 | 3 | 25 |
Module308 | 11 | 25 | GO:0072596 | biological_process | establishment of protein localization to chloroplast | 9.22E-07 | 3 | 25 |
Module308 | 11 | 26 | GO:0072598 | biological_process | protein localization to chloroplast | 9.22E-07 | 3 | 25 |
Module308 | 11 | 27 | GO:0043168 | molecular_function | anion binding | 1.89E-06 | 9 | 2999 |
Module308 | 11 | 28 | GO:0009409 | biological_process | response to cold | 2.45E-06 | 5 | 307 |
Module308 | 11 | 29 | GO:0006458 | biological_process | 'de novo' protein folding | 3.63E-06 | 2 | 4 |
Module308 | 11 | 30 | GO:0051084 | biological_process | 'de novo' posttranslational protein folding | 3.63E-06 | 2 | 4 |
Module308 | 11 | 31 | GO:0051085 | biological_process | chaperone mediated protein folding requiring cofactor | 3.63E-06 | 2 | 4 |
Module308 | 11 | 32 | GO:1901265 | molecular_function | nucleoside phosphate binding | 5.26E-06 | 9 | 3369 |
Module308 | 11 | 33 | GO:0000166 | molecular_function | nucleotide binding | 5.26E-06 | 9 | 3369 |
Module308 | 11 | 34 | GO:0005576 | cellular_component | extracellular region | 5.38E-06 | 6 | 523 |
Module308 | 11 | 35 | GO:0036094 | molecular_function | small molecule binding | 6.49E-06 | 9 | 3451 |
Module308 | 11 | 36 | GO:0005739 | cellular_component | mitochondrion | 8.77E-06 | 7 | 916 |
Module308 | 11 | 37 | GO:0061077 | biological_process | chaperone-mediated protein folding | 9.07E-06 | 2 | 6 |
Module308 | 11 | 38 | GO:0009507 | cellular_component | chloroplast | 1.35E-05 | 9 | 2032 |
Module308 | 11 | 39 | GO:0042026 | biological_process | protein refolding | 1.69E-05 | 2 | 8 |
Module308 | 11 | 40 | GO:0009536 | cellular_component | plastid | 2.12E-05 | 9 | 2141 |
Module308 | 11 | 41 | GO:0045037 | biological_process | protein import into chloroplast stroma | 3.32E-05 | 2 | 11 |
Module308 | 11 | 42 | GO:0009658 | biological_process | chloroplast organization | 3.46E-05 | 3 | 82 |
Module308 | 11 | 43 | GO:0072594 | biological_process | establishment of protein localization to organelle | 8.10E-05 | 3 | 109 |
Module308 | 11 | 44 | GO:0009579 | cellular_component | thylakoid | 8.20E-05 | 5 | 496 |
Module308 | 11 | 45 | GO:0006605 | biological_process | protein targeting | 0.000100034 | 3 | 117 |
Module308 | 11 | 46 | GO:0033365 | biological_process | protein localization to organelle | 0.000107854 | 3 | 120 |
Module308 | 11 | 47 | GO:0009657 | biological_process | plastid organization | 0.000146352 | 3 | 133 |
Module308 | 11 | 48 | GO:1902580 | biological_process | single-organism cellular localization | 0.000156349 | 3 | 136 |
Module308 | 11 | 49 | GO:0016482 | biological_process | cytoplasmic transport | 0.000340154 | 3 | 177 |
Module308 | 11 | 50 | GO:0009628 | biological_process | response to abiotic stimulus | 0.000402543 | 6 | 1427 |
Module308 | 11 | 51 | GO:0044446 | cellular_component | intracellular organelle part | 0.000427008 | 9 | 3055 |
Module308 | 11 | 52 | GO:0044422 | cellular_component | organelle part | 0.00043285 | 9 | 3060 |
Module308 | 11 | 53 | GO:0044743 | biological_process | intracellular protein transmembrane import | 0.000464566 | 2 | 40 |
Module308 | 11 | 54 | GO:0009627 | biological_process | systemic acquired resistance | 0.000488172 | 2 | 41 |
Module308 | 11 | 55 | GO:0065002 | biological_process | intracellular protein transmembrane transport | 0.000537106 | 2 | 43 |
Module308 | 11 | 56 | GO:0071806 | biological_process | protein transmembrane transport | 0.000537106 | 2 | 43 |
Module308 | 11 | 57 | GO:0043167 | molecular_function | ion binding | 0.000610425 | 9 | 5827 |
Module308 | 11 | 58 | GO:1902582 | biological_process | single-organism intracellular transport | 0.000713342 | 3 | 228 |
Module308 | 11 | 59 | GO:0017038 | biological_process | protein import | 0.000878572 | 2 | 55 |
Module308 | 11 | 60 | GO:0010319 | cellular_component | stromule | 0.001131042 | 2 | 49 |
Module308 | 11 | 61 | GO:1901363 | molecular_function | heterocyclic compound binding | 0.001458645 | 9 | 6456 |
Module308 | 11 | 62 | GO:0097159 | molecular_function | organic cyclic compound binding | 0.001468226 | 9 | 6461 |
Module308 | 11 | 63 | GO:0006886 | biological_process | intracellular protein transport | 0.001563269 | 3 | 299 |
Module308 | 11 | 64 | GO:1900407 | biological_process | regulation of cellular response to oxidative stress | 0.001631926 | 1 | 2 |
Module308 | 11 | 65 | GO:1900409 | biological_process | positive regulation of cellular response to oxidative stress | 0.001631926 | 1 | 2 |
Module308 | 11 | 66 | GO:2000379 | biological_process | positive regulation of reactive oxygen species metabolic process | 0.001631926 | 1 | 2 |
Module308 | 11 | 67 | GO:1902882 | biological_process | regulation of response to oxidative stress | 0.001631926 | 1 | 2 |
Module308 | 11 | 68 | GO:1902884 | biological_process | positive regulation of response to oxidative stress | 0.001631926 | 1 | 2 |
Module308 | 11 | 69 | GO:0051353 | biological_process | positive regulation of oxidoreductase activity | 0.001631926 | 1 | 2 |
Module308 | 11 | 70 | GO:0051341 | biological_process | regulation of oxidoreductase activity | 0.001631926 | 1 | 2 |
Module308 | 11 | 71 | GO:0005737 | cellular_component | cytoplasm | 0.001661308 | 11 | 5900 |
Module308 | 11 | 72 | GO:0034613 | biological_process | cellular protein localization | 0.001899586 | 3 | 320 |
Module308 | 11 | 73 | GO:0070727 | biological_process | cellular macromolecule localization | 0.002221582 | 3 | 338 |
Module308 | 11 | 74 | GO:0051082 | molecular_function | unfolded protein binding | 0.002374275 | 2 | 122 |
Module308 | 11 | 75 | GO:0090322 | biological_process | regulation of superoxide metabolic process | 0.002446981 | 1 | 3 |
Module308 | 11 | 76 | GO:0006950 | biological_process | response to stress | 0.002959639 | 6 | 2065 |
Module308 | 11 | 77 | GO:0010035 | biological_process | response to inorganic substance | 0.003309985 | 4 | 829 |
Module308 | 11 | 78 | GO:0046907 | biological_process | intracellular transport | 0.003362078 | 3 | 391 |
Module308 | 11 | 79 | GO:0008219 | biological_process | cell death | 0.003585392 | 2 | 112 |
Module308 | 11 | 80 | GO:0016265 | biological_process | death | 0.003585392 | 2 | 112 |
Module308 | 11 | 81 | GO:0022626 | cellular_component | cytosolic ribosome | 0.003669685 | 3 | 316 |
Module308 | 11 | 82 | GO:0009814 | biological_process | defense response, incompatible interaction | 0.003905462 | 2 | 117 |
Module308 | 11 | 83 | GO:1990748 | biological_process | cellular detoxification | 0.004075276 | 1 | 5 |
Module308 | 11 | 84 | GO:0019430 | biological_process | removal of superoxide radicals | 0.004075276 | 1 | 5 |
Module308 | 11 | 85 | GO:0071450 | biological_process | cellular response to oxygen radical | 0.004075276 | 1 | 5 |
Module308 | 11 | 86 | GO:0071451 | biological_process | cellular response to superoxide | 0.004075276 | 1 | 5 |
Module308 | 11 | 87 | GO:0098869 | biological_process | cellular oxidant detoxification | 0.004075276 | 1 | 5 |
Module308 | 11 | 88 | GO:0015031 | biological_process | protein transport | 0.004425796 | 3 | 431 |
Module308 | 11 | 89 | GO:0046686 | biological_process | response to cadmium ion | 0.004483794 | 3 | 433 |
Module308 | 11 | 90 | GO:0045184 | biological_process | establishment of protein localization | 0.00454226 | 3 | 435 |
Module308 | 11 | 91 | GO:0044445 | cellular_component | cytosolic part | 0.004738647 | 3 | 346 |
Module308 | 11 | 92 | GO:0008104 | biological_process | protein localization | 0.005121246 | 3 | 454 |
Module308 | 11 | 93 | GO:0009534 | cellular_component | chloroplast thylakoid | 0.005981125 | 3 | 376 |
Module308 | 11 | 94 | GO:0051649 | biological_process | establishment of localization in cell | 0.006018838 | 3 | 481 |
Module308 | 11 | 95 | GO:0031976 | cellular_component | plastid thylakoid | 0.006025627 | 3 | 377 |
Module308 | 11 | 96 | GO:0000303 | biological_process | response to superoxide | 0.006513189 | 1 | 8 |
Module308 | 11 | 97 | GO:0000305 | biological_process | response to oxygen radical | 0.006513189 | 1 | 8 |
Module308 | 11 | 98 | GO:0009408 | biological_process | response to heat | 0.006923351 | 2 | 157 |
Module308 | 11 | 99 | GO:0010038 | biological_process | response to metal ion | 0.007435728 | 3 | 519 |
Module308 | 11 | 100 | GO:0051641 | biological_process | cellular localization | 0.00779829 | 3 | 528 |
Module308 | 11 | 101 | GO:0033036 | biological_process | macromolecule localization | 0.00842597 | 3 | 543 |
Module308 | 11 | 102 | GO:0045087 | biological_process | innate immune response | 0.008445 | 2 | 174 |
Module308 | 11 | 103 | GO:0009704 | biological_process | de-etiolation | 0.008945675 | 1 | 11 |
Module308 | 11 | 104 | GO:0006955 | biological_process | immune response | 0.009015077 | 2 | 180 |
Module308 | 11 | 105 | GO:0009368 | cellular_component | endopeptidase Clp complex | 0.009345727 | 1 | 9 |
Module308 | 11 | 106 | GO:0009840 | cellular_component | chloroplastic endopeptidase Clp complex | 0.009345727 | 1 | 9 |
Module308 | 11 | 107 | GO:2000377 | biological_process | regulation of reactive oxygen species metabolic process | 0.0097553 | 1 | 12 |
Module308 | 11 | 108 | GO:0002376 | biological_process | immune system process | 0.011037208 | 2 | 200 |
Module308 | 11 | 109 | GO:0005507 | molecular_function | copper ion binding | 0.011053335 | 2 | 269 |
Module308 | 11 | 110 | GO:0098754 | biological_process | detoxification | 0.012180568 | 1 | 15 |
Module308 | 11 | 111 | GO:0031984 | cellular_component | organelle subcompartment | 0.016559477 | 3 | 545 |
Module308 | 11 | 112 | GO:0080135 | biological_process | regulation of cellular response to stress | 0.017014911 | 1 | 21 |
Module308 | 11 | 113 | GO:0034614 | biological_process | cellular response to reactive oxygen species | 0.017818541 | 1 | 22 |
Module308 | 11 | 114 | GO:0071702 | biological_process | organic substance transport | 0.017951843 | 3 | 717 |
Module308 | 11 | 115 | GO:0009987 | biological_process | cellular process | 0.017968317 | 11 | 9353 |
Module308 | 11 | 116 | GO:0006801 | biological_process | superoxide metabolic process | 0.018621573 | 1 | 23 |
Module308 | 11 | 117 | GO:0006996 | biological_process | organelle organization | 0.021786182 | 3 | 771 |
Module308 | 11 | 118 | GO:0005840 | cellular_component | ribosome | 0.023656683 | 3 | 623 |
Module308 | 11 | 119 | GO:0034599 | biological_process | cellular response to oxidative stress | 0.024226108 | 1 | 30 |
Module308 | 11 | 120 | GO:0009636 | biological_process | response to toxic substance | 0.025024376 | 1 | 31 |
Module308 | 11 | 121 | GO:0044093 | biological_process | positive regulation of molecular function | 0.03138918 | 1 | 39 |
Module308 | 11 | 122 | GO:0043085 | biological_process | positive regulation of catalytic activity | 0.03138918 | 1 | 39 |
Module308 | 11 | 123 | GO:0044424 | cellular_component | intracellular part | 0.031821939 | 11 | 7715 |
Module308 | 11 | 124 | GO:1990904 | cellular_component | ribonucleoprotein complex | 0.034657834 | 3 | 721 |
Module308 | 11 | 125 | GO:0030529 | cellular_component | intracellular ribonucleoprotein complex | 0.034657834 | 3 | 721 |
Module308 | 11 | 126 | GO:0042221 | biological_process | response to chemical | 0.038640835 | 4 | 1681 |
Module308 | 11 | 127 | GO:0044444 | cellular_component | cytoplasmic part | 0.039341293 | 9 | 5412 |
Module308 | 11 | 128 | GO:0098542 | biological_process | defense response to other organism | 0.039753817 | 2 | 396 |
Module308 | 11 | 129 | GO:0009535 | cellular_component | chloroplast thylakoid membrane | 0.039945364 | 2 | 311 |
Module308 | 11 | 130 | GO:0055035 | cellular_component | plastid thylakoid membrane | 0.040415661 | 2 | 313 |
Module308 | 11 | 131 | GO:0050896 | biological_process | response to stimulus | 0.04245237 | 6 | 3528 |
Module308 | 11 | 132 | GO:0042651 | cellular_component | thylakoid membrane | 0.048484574 | 2 | 346 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
GRMZM2G002220 | GRMZM2G001500 | 0.037 |
GRMZM2G002220 | GRMZM5G888696 | 0.0351 |
GRMZM2G001500 | GRMZM2G095252 | 0.0428 |
GRMZM2G083716 | cps2 | 0.0422 |
GRMZM2G083716 | GRMZM2G095252 | 0.0548 |
GRMZM2G083716 | GRMZM2G127609 | 0.0624 |
GRMZM2G083716 | GRMZM2G399284 | 0.0389 |
GRMZM2G095252 | GRMZM2G091189 | 0.0409 |
GRMZM2G095252 | GRMZM2G133698 | 0.0506 |
GRMZM2G091189 | GRMZM2G148106 | 0.0351 |
GRMZM2G127609 | GRMZM2G399284 | 0.0352 |