This page contains information for Module312, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
GRMZM2G012062 | Module312 | AT4G10520 | AT4G10520 | Subtilase family protein | |||
GRMZM2G021617 | oec2 | Module312 | AT4G05180 | PSBQ-2 | photosystem II subunit Q-2 | photosystem II subunit Q-2 | |
GRMZM2G090872 | Module312 | AT3G60210 | AT3G60210 | GroES-like family protein | |||
GRMZM2G122296 | Module312 | AT3G18000 | XPL1 | XIPOTL 1 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | ||
GRMZM2G145589 | Module312 | AT4G10520 | AT4G10520 | Subtilase family protein | |||
GRMZM2G030252 | Module312 | AT4G01440 | UMAMIT31 | Usually multiple acids move in and out Transporters 31 | nodulin MtN21 /EamA-like transporter family protein | ||
GRMZM2G158147 | Module312 | AT1G19920 | APS2 | Pseudouridine synthase/archaeosine transglycosylase-like family protein | |||
GRMZM2G175804 | Module312 | AT4G28660 | PSB28 | photosystem II reaction center PSB28 protein | photosystem II reaction center PSB28 protein | ||
GRMZM2G132506 | Module312 | AT4G28660 | PSB28 | photosystem II reaction center PSB28 protein | photosystem II reaction center PSB28 protein | ||
GRMZM2G404443 | ckx6 | Module312 | AT3G63440 | CKX6 | cytokinin oxidase/dehydrogenase 6 | cytokinin oxidase/dehydrogenase 6 | |
GRMZM5G815453 | Module312 | ATCG00490 | RBCL | ribulose-bisphosphate carboxylases |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module312 | 11 | 1 | GO:0009654 | cellular_component | photosystem II oxygen evolving complex | 5.19E-07 | 3 | 27 |
Module312 | 11 | 2 | GO:0009523 | cellular_component | photosystem II | 3.25E-06 | 3 | 49 |
Module312 | 11 | 3 | GO:0015979 | biological_process | photosynthesis | 1.14E-05 | 4 | 211 |
Module312 | 11 | 4 | GO:0009521 | cellular_component | photosystem | 1.23E-05 | 3 | 76 |
Module312 | 11 | 5 | GO:1990204 | cellular_component | oxidoreductase complex | 6.45E-05 | 3 | 132 |
Module312 | 11 | 6 | GO:0004252 | molecular_function | serine-type endopeptidase activity | 0.000915423 | 2 | 110 |
Module312 | 11 | 7 | GO:0042651 | cellular_component | thylakoid membrane | 0.001108504 | 3 | 346 |
Module312 | 11 | 8 | GO:0034357 | cellular_component | photosynthetic membrane | 0.001233932 | 3 | 359 |
Module312 | 11 | 9 | GO:0000234 | molecular_function | phosphoethanolamine N-methyltransferase activity | 0.001279707 | 1 | 3 |
Module312 | 11 | 10 | GO:0044436 | cellular_component | thylakoid part | 0.001400361 | 3 | 375 |
Module312 | 11 | 11 | GO:0098796 | cellular_component | membrane protein complex | 0.001864448 | 3 | 414 |
Module312 | 11 | 12 | GO:1902494 | cellular_component | catalytic complex | 0.002093897 | 3 | 431 |
Module312 | 11 | 13 | GO:0042425 | biological_process | choline biosynthetic process | 0.002224693 | 1 | 3 |
Module312 | 11 | 14 | GO:0019695 | biological_process | choline metabolic process | 0.002224693 | 1 | 3 |
Module312 | 11 | 15 | GO:0008236 | molecular_function | serine-type peptidase activity | 0.002532333 | 2 | 184 |
Module312 | 11 | 16 | GO:0017171 | molecular_function | serine hydrolase activity | 0.002532333 | 2 | 184 |
Module312 | 11 | 17 | GO:0004781 | molecular_function | sulfate adenylyltransferase (ATP) activity | 0.002558011 | 1 | 6 |
Module312 | 11 | 18 | GO:0004779 | molecular_function | sulfate adenylyltransferase activity | 0.0029838 | 1 | 7 |
Module312 | 11 | 19 | GO:0009579 | cellular_component | thylakoid | 0.003134186 | 3 | 496 |
Module312 | 11 | 20 | GO:0009308 | biological_process | amine metabolic process | 0.003213566 | 2 | 117 |
Module312 | 11 | 21 | GO:0016984 | molecular_function | ribulose-bisphosphate carboxylase activity | 0.004260234 | 1 | 10 |
Module312 | 11 | 22 | GO:0019139 | molecular_function | cytokinin dehydrogenase activity | 0.004260234 | 1 | 10 |
Module312 | 11 | 23 | GO:0006656 | biological_process | phosphatidylcholine biosynthetic process | 0.004444931 | 1 | 6 |
Module312 | 11 | 24 | GO:0009570 | cellular_component | chloroplast stroma | 0.005566513 | 3 | 607 |
Module312 | 11 | 25 | GO:0009532 | cellular_component | plastid stroma | 0.005963784 | 3 | 622 |
Module312 | 11 | 26 | GO:0019253 | biological_process | reductive pentose-phosphate cycle | 0.006660722 | 1 | 9 |
Module312 | 11 | 27 | GO:0019685 | biological_process | photosynthesis, dark reaction | 0.006660722 | 1 | 9 |
Module312 | 11 | 28 | GO:0004175 | molecular_function | endopeptidase activity | 0.006933334 | 2 | 308 |
Module312 | 11 | 29 | GO:0000103 | biological_process | sulfate assimilation | 0.008135449 | 1 | 11 |
Module312 | 11 | 30 | GO:0009970 | biological_process | cellular response to sulfate starvation | 0.009608205 | 1 | 13 |
Module312 | 11 | 31 | GO:0050918 | biological_process | positive chemotaxis | 0.010343845 | 1 | 14 |
Module312 | 11 | 32 | GO:0010183 | biological_process | pollen tube guidance | 0.010343845 | 1 | 14 |
Module312 | 11 | 33 | GO:0042330 | biological_process | taxis | 0.010343845 | 1 | 14 |
Module312 | 11 | 34 | GO:0009853 | biological_process | photorespiration | 0.010343845 | 1 | 14 |
Module312 | 11 | 35 | GO:0006935 | biological_process | chemotaxis | 0.010343845 | 1 | 14 |
Module312 | 11 | 36 | GO:0008762 | molecular_function | UDP-N-acetylmuramate dehydrogenase activity | 0.010621412 | 1 | 25 |
Module312 | 11 | 37 | GO:0070566 | molecular_function | adenylyltransferase activity | 0.011466931 | 1 | 27 |
Module312 | 11 | 38 | GO:0016645 | molecular_function | oxidoreductase activity, acting on the CH-NH group of donors | 0.011466931 | 1 | 27 |
Module312 | 11 | 39 | GO:0046470 | biological_process | phosphatidylcholine metabolic process | 0.012547814 | 1 | 17 |
Module312 | 11 | 40 | GO:0040011 | biological_process | locomotion | 0.013281488 | 1 | 18 |
Module312 | 11 | 41 | GO:0042439 | biological_process | ethanolamine-containing compound metabolic process | 0.014014672 | 1 | 19 |
Module312 | 11 | 42 | GO:0009690 | biological_process | cytokinin metabolic process | 0.014014672 | 1 | 19 |
Module312 | 11 | 43 | GO:0015977 | biological_process | carbon fixation | 0.014747365 | 1 | 20 |
Module312 | 11 | 44 | GO:0009543 | cellular_component | chloroplast thylakoid lumen | 0.016470221 | 1 | 25 |
Module312 | 11 | 45 | GO:0031978 | cellular_component | plastid thylakoid lumen | 0.016470221 | 1 | 25 |
Module312 | 11 | 46 | GO:0009535 | cellular_component | chloroplast thylakoid membrane | 0.016482576 | 2 | 311 |
Module312 | 11 | 47 | GO:0055035 | cellular_component | plastid thylakoid membrane | 0.016684948 | 2 | 313 |
Module312 | 11 | 48 | GO:0070011 | molecular_function | peptidase activity, acting on L-amino acid peptides | 0.017722842 | 2 | 502 |
Module312 | 11 | 49 | GO:0034754 | biological_process | cellular hormone metabolic process | 0.019862513 | 1 | 27 |
Module312 | 11 | 50 | GO:0008170 | molecular_function | N-methyltransferase activity | 0.02030756 | 1 | 48 |
Module312 | 11 | 51 | GO:0008233 | molecular_function | peptidase activity | 0.020565292 | 2 | 543 |
Module312 | 11 | 52 | GO:0009534 | cellular_component | chloroplast thylakoid | 0.02361072 | 2 | 376 |
Module312 | 11 | 53 | GO:0031976 | cellular_component | plastid thylakoid | 0.023729059 | 2 | 377 |
Module312 | 11 | 54 | GO:0097164 | biological_process | ammonium ion metabolic process | 0.02567912 | 1 | 35 |
Module312 | 11 | 55 | GO:0019898 | cellular_component | extrinsic component of membrane | 0.026888676 | 1 | 41 |
Module312 | 11 | 56 | GO:0009507 | cellular_component | chloroplast | 0.029204009 | 4 | 2032 |
Module312 | 11 | 57 | GO:0043094 | biological_process | cellular metabolic compound salvage | 0.029298705 | 1 | 40 |
Module312 | 11 | 58 | GO:0044434 | cellular_component | chloroplast part | 0.029854616 | 3 | 1117 |
Module312 | 11 | 59 | GO:0044435 | cellular_component | plastid part | 0.031152172 | 3 | 1135 |
Module312 | 11 | 60 | GO:0042401 | biological_process | cellular biogenic amine biosynthetic process | 0.032185654 | 1 | 44 |
Module312 | 11 | 61 | GO:0009309 | biological_process | amine biosynthetic process | 0.032185654 | 1 | 44 |
Module312 | 11 | 62 | GO:0016831 | molecular_function | carboxy-lyase activity | 0.033234121 | 1 | 79 |
Module312 | 11 | 63 | GO:0009536 | cellular_component | plastid | 0.03497276 | 4 | 2141 |
Module312 | 11 | 64 | GO:0008757 | molecular_function | S-adenosylmethionine-dependent methyltransferase activity | 0.037785685 | 1 | 90 |
Module312 | 11 | 65 | GO:0046474 | biological_process | glycerophospholipid biosynthetic process | 0.037936382 | 1 | 52 |
Module312 | 11 | 66 | GO:0042445 | biological_process | hormone metabolic process | 0.040800197 | 1 | 56 |
Module312 | 11 | 67 | GO:0031977 | cellular_component | thylakoid lumen | 0.04169941 | 1 | 64 |
Module312 | 11 | 68 | GO:0046165 | biological_process | alcohol biosynthetic process | 0.042943021 | 1 | 59 |
Module312 | 11 | 69 | GO:0043234 | cellular_component | protein complex | 0.043026607 | 3 | 1283 |
Module312 | 11 | 70 | GO:0031984 | cellular_component | organelle subcompartment | 0.047029768 | 2 | 545 |
Module312 | 11 | 71 | GO:0045017 | biological_process | glycerolipid biosynthetic process | 0.047926199 | 1 | 66 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
GRMZM2G012062 | oec2 | 0.0377 |
GRMZM2G012062 | GRMZM2G090872 | 0.0485 |
GRMZM2G012062 | GRMZM2G145589 | 0.2818 |
GRMZM2G012062 | GRMZM2G175804 | 0.064 |
GRMZM2G012062 | GRMZM5G815453 | 0.0765 |
oec2 | GRMZM2G175804 | 0.0765 |
oec2 | GRMZM5G815453 | 0.0393 |
GRMZM2G122296 | GRMZM2G145589 | 0.0466 |
GRMZM2G145589 | GRMZM2G030252 | 0.0369 |
GRMZM2G145589 | GRMZM2G158147 | 0.0367 |
GRMZM2G145589 | GRMZM5G815453 | 0.0371 |
GRMZM2G030252 | ckx6 | 0.0351 |
GRMZM2G175804 | GRMZM2G132506 | 0.04 |
GRMZM2G175804 | GRMZM5G815453 | 0.062 |