This page contains information for Module315, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
GRMZM2G026371 | Module315 | AT5G08610 | PDE340 | PIGMENT DEFECTIVE 340 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | ||
GRMZM2G049547 | Module315 | AT5G35220 | EGY1 | ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN 1 | Peptidase M50 family protein | ||
GRMZM2G007907 | Module315 | AT5G35220 | EGY1 | ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN 1 | Peptidase M50 family protein | ||
GRMZM2G068715 | Module315 | AT2G37220 | AT2G37220 | RNA-binding (RRM/RBD/RNP motifs) family protein | |||
GRMZM2G077632 | Module315 | AT5G18570 | EMB269 | EMBRYO DEFECTIVE 269 | GTP1/OBG family protein | ||
GRMZM2G097282 | Module315 | AT2G19870 | AT2G19870 | tRNA/rRNA methyltransferase (SpoU) family protein | |||
GRMZM2G158835 | rnp1 | Module315 | AT2G37220 | AT2G37220 | RNA-binding (RRM/RBD/RNP motifs) family protein | ||
GRMZM2G445057 | Module315 | AT1G55140 | AT1G55140 | Ribonuclease III family protein | |||
GRMZM2G002642 | Module315 | AT5G64030 | AT5G64030 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | |||
GRMZM2G122116 | ptac2 | Module315 | AT1G74850 | PTAC2 | plastid transcriptionally active 2 | plastid transcriptionally active 2 | |
GRMZM2G472651 | tha4 | Module315 | AT5G28750 | AT5G28750 | Bacterial sec-independent translocation protein mttA/Hcf106 |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module315 | 11 | 1 | GO:0044802 | biological_process | single-organism membrane organization | 2.14E-07 | 4 | 70 |
Module315 | 11 | 2 | GO:0061024 | biological_process | membrane organization | 5.17E-07 | 4 | 87 |
Module315 | 11 | 3 | GO:0010027 | biological_process | thylakoid membrane organization | 1.17E-06 | 3 | 27 |
Module315 | 11 | 4 | GO:0009668 | biological_process | plastid membrane organization | 1.17E-06 | 3 | 27 |
Module315 | 11 | 5 | GO:0009657 | biological_process | plastid organization | 2.84E-06 | 4 | 133 |
Module315 | 11 | 6 | GO:0009536 | cellular_component | plastid | 4.70E-06 | 9 | 2141 |
Module315 | 11 | 7 | GO:0048564 | biological_process | photosystem I assembly | 9.07E-06 | 2 | 6 |
Module315 | 11 | 8 | GO:0009959 | biological_process | negative gravitropism | 2.17E-05 | 2 | 9 |
Module315 | 11 | 9 | GO:0009658 | biological_process | chloroplast organization | 3.46E-05 | 3 | 82 |
Module315 | 11 | 10 | GO:0010207 | biological_process | photosystem II assembly | 4.70E-05 | 2 | 13 |
Module315 | 11 | 11 | GO:0008187 | molecular_function | poly-pyrimidine tract binding | 5.09E-05 | 2 | 18 |
Module315 | 11 | 12 | GO:0008266 | molecular_function | poly(U) RNA binding | 5.09E-05 | 2 | 18 |
Module315 | 11 | 13 | GO:0009507 | cellular_component | chloroplast | 5.79E-05 | 8 | 2032 |
Module315 | 11 | 14 | GO:0003727 | molecular_function | single-stranded RNA binding | 0.000125369 | 2 | 28 |
Module315 | 11 | 15 | GO:0004222 | molecular_function | metalloendopeptidase activity | 0.000284264 | 2 | 42 |
Module315 | 11 | 16 | GO:0003723 | molecular_function | RNA binding | 0.000334499 | 4 | 611 |
Module315 | 11 | 17 | GO:0009628 | biological_process | response to abiotic stimulus | 0.000402543 | 6 | 1427 |
Module315 | 11 | 18 | GO:0008237 | molecular_function | metallopeptidase activity | 0.000660848 | 2 | 64 |
Module315 | 11 | 19 | GO:0009630 | biological_process | gravitropism | 0.00069762 | 2 | 49 |
Module315 | 11 | 20 | GO:0009629 | biological_process | response to gravity | 0.000878572 | 2 | 55 |
Module315 | 11 | 21 | GO:0010319 | cellular_component | stromule | 0.000928147 | 2 | 49 |
Module315 | 11 | 22 | GO:0009606 | biological_process | tropism | 0.00097666 | 2 | 58 |
Module315 | 11 | 23 | GO:0031984 | cellular_component | organelle subcompartment | 0.001150999 | 4 | 545 |
Module315 | 11 | 24 | GO:0009941 | cellular_component | chloroplast envelope | 0.001150999 | 4 | 545 |
Module315 | 11 | 25 | GO:0009977 | molecular_function | proton motive force dependent protein transmembrane transporter activity | 0.00121888 | 1 | 2 |
Module315 | 11 | 26 | GO:0044444 | cellular_component | cytoplasmic part | 0.001253308 | 10 | 5412 |
Module315 | 11 | 27 | GO:0009526 | cellular_component | plastid envelope | 0.001343934 | 4 | 568 |
Module315 | 11 | 28 | GO:0043953 | biological_process | protein transport by the Tat complex | 0.001631926 | 1 | 2 |
Module315 | 11 | 29 | GO:0009409 | biological_process | response to cold | 0.001686508 | 3 | 307 |
Module315 | 11 | 30 | GO:0006396 | biological_process | RNA processing | 0.001750365 | 3 | 311 |
Module315 | 11 | 31 | GO:0009532 | cellular_component | plastid stroma | 0.001885769 | 4 | 622 |
Module315 | 11 | 32 | GO:0044435 | cellular_component | plastid part | 0.002260473 | 5 | 1135 |
Module315 | 11 | 33 | GO:0016043 | biological_process | cellular component organization | 0.00235423 | 5 | 1303 |
Module315 | 11 | 34 | GO:0006996 | biological_process | organelle organization | 0.002537661 | 4 | 771 |
Module315 | 11 | 35 | GO:0009535 | cellular_component | chloroplast thylakoid membrane | 0.002607627 | 3 | 311 |
Module315 | 11 | 36 | GO:0055035 | cellular_component | plastid thylakoid membrane | 0.002655745 | 3 | 313 |
Module315 | 11 | 37 | GO:0009725 | biological_process | response to hormone | 0.002774957 | 4 | 790 |
Module315 | 11 | 38 | GO:0033281 | cellular_component | TAT protein transport complex | 0.002840369 | 1 | 3 |
Module315 | 11 | 39 | GO:0005737 | cellular_component | cytoplasm | 0.002973713 | 10 | 5900 |
Module315 | 11 | 40 | GO:0009719 | biological_process | response to endogenous stimulus | 0.003309985 | 4 | 829 |
Module315 | 11 | 41 | GO:0042651 | cellular_component | thylakoid membrane | 0.003531422 | 3 | 346 |
Module315 | 11 | 42 | GO:0071840 | biological_process | cellular component organization or biogenesis | 0.003620736 | 5 | 1435 |
Module315 | 11 | 43 | GO:0009723 | biological_process | response to ethylene | 0.003648368 | 2 | 113 |
Module315 | 11 | 44 | GO:0019684 | biological_process | photosynthesis, light reaction | 0.003775879 | 2 | 115 |
Module315 | 11 | 45 | GO:0034357 | cellular_component | photosynthetic membrane | 0.00392004 | 3 | 359 |
Module315 | 11 | 46 | GO:0043157 | biological_process | response to cation stress | 0.004075276 | 1 | 5 |
Module315 | 11 | 47 | GO:0060359 | biological_process | response to ammonium ion | 0.004075276 | 1 | 5 |
Module315 | 11 | 48 | GO:0042793 | biological_process | transcription from plastid promoter | 0.004075276 | 1 | 5 |
Module315 | 11 | 49 | GO:0044436 | cellular_component | thylakoid part | 0.004433484 | 3 | 375 |
Module315 | 11 | 50 | GO:0009534 | cellular_component | chloroplast thylakoid | 0.004466884 | 3 | 376 |
Module315 | 11 | 51 | GO:0031976 | cellular_component | plastid thylakoid | 0.004500439 | 3 | 377 |
Module315 | 11 | 52 | GO:0043231 | cellular_component | intracellular membrane-bounded organelle | 0.004615856 | 10 | 6165 |
Module315 | 11 | 53 | GO:0043227 | cellular_component | membrane-bounded organelle | 0.004623354 | 10 | 6166 |
Module315 | 11 | 54 | GO:0031360 | cellular_component | intrinsic component of thylakoid membrane | 0.004729913 | 1 | 5 |
Module315 | 11 | 55 | GO:0031361 | cellular_component | integral component of thylakoid membrane | 0.004729913 | 1 | 5 |
Module315 | 11 | 56 | GO:0045038 | biological_process | protein import into chloroplast thylakoid membrane | 0.004888517 | 1 | 6 |
Module315 | 11 | 57 | GO:0009266 | biological_process | response to temperature stimulus | 0.004902945 | 3 | 447 |
Module315 | 11 | 58 | GO:0009416 | biological_process | response to light stimulus | 0.005410574 | 3 | 463 |
Module315 | 11 | 59 | GO:0010033 | biological_process | response to organic substance | 0.005651332 | 4 | 961 |
Module315 | 11 | 60 | GO:0031967 | cellular_component | organelle envelope | 0.005767258 | 4 | 844 |
Module315 | 11 | 61 | GO:0009314 | biological_process | response to radiation | 0.005880226 | 3 | 477 |
Module315 | 11 | 62 | GO:0031975 | cellular_component | envelope | 0.005991804 | 4 | 853 |
Module315 | 11 | 63 | GO:0042221 | biological_process | response to chemical | 0.007239525 | 5 | 1681 |
Module315 | 11 | 64 | GO:0043623 | biological_process | cellular protein complex assembly | 0.007268827 | 2 | 161 |
Module315 | 11 | 65 | GO:0004525 | molecular_function | ribonuclease III activity | 0.007293249 | 1 | 12 |
Module315 | 11 | 66 | GO:0032296 | molecular_function | double-stranded RNA-specific ribonuclease activity | 0.007293249 | 1 | 12 |
Module315 | 11 | 67 | GO:0045087 | biological_process | innate immune response | 0.008445 | 2 | 174 |
Module315 | 11 | 68 | GO:0006955 | biological_process | immune response | 0.009015077 | 2 | 180 |
Module315 | 11 | 69 | GO:0009579 | cellular_component | thylakoid | 0.009667647 | 3 | 496 |
Module315 | 11 | 70 | GO:0022884 | molecular_function | macromolecule transmembrane transporter activity | 0.009713672 | 1 | 16 |
Module315 | 11 | 71 | GO:0008320 | molecular_function | protein transmembrane transporter activity | 0.009713672 | 1 | 16 |
Module315 | 11 | 72 | GO:0015450 | molecular_function | P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 0.009713672 | 1 | 16 |
Module315 | 11 | 73 | GO:0044085 | biological_process | cellular component biogenesis | 0.009723721 | 3 | 572 |
Module315 | 11 | 74 | GO:0043229 | cellular_component | intracellular organelle | 0.010042844 | 10 | 6663 |
Module315 | 11 | 75 | GO:0043226 | cellular_component | organelle | 0.010073051 | 10 | 6665 |
Module315 | 11 | 76 | GO:0009306 | biological_process | protein secretion | 0.010564323 | 1 | 13 |
Module315 | 11 | 77 | GO:0002376 | biological_process | immune system process | 0.011037208 | 2 | 200 |
Module315 | 11 | 78 | GO:0015979 | biological_process | photosynthesis | 0.012227867 | 2 | 211 |
Module315 | 11 | 79 | GO:0008168 | molecular_function | methyltransferase activity | 0.01251149 | 2 | 287 |
Module315 | 11 | 80 | GO:0000229 | cellular_component | cytoplasmic chromosome | 0.013193044 | 1 | 14 |
Module315 | 11 | 81 | GO:0009508 | cellular_component | plastid chromosome | 0.013193044 | 1 | 14 |
Module315 | 11 | 82 | GO:0016741 | molecular_function | transferase activity, transferring one-carbon groups | 0.013788387 | 2 | 302 |
Module315 | 11 | 83 | GO:0004175 | molecular_function | endopeptidase activity | 0.014314648 | 2 | 308 |
Module315 | 11 | 84 | GO:0016891 | molecular_function | endoribonuclease activity, producing 5'-phosphomonoesters | 0.014538591 | 1 | 24 |
Module315 | 11 | 85 | GO:0044434 | cellular_component | chloroplast part | 0.015537332 | 4 | 1117 |
Module315 | 11 | 86 | GO:0009570 | cellular_component | chloroplast stroma | 0.016764336 | 3 | 607 |
Module315 | 11 | 87 | GO:0001101 | biological_process | response to acid chemical | 0.017222938 | 3 | 706 |
Module315 | 11 | 88 | GO:0008173 | molecular_function | RNA methyltransferase activity | 0.017543411 | 1 | 29 |
Module315 | 11 | 89 | GO:0016787 | molecular_function | hydrolase activity | 0.017786208 | 5 | 2828 |
Module315 | 11 | 90 | GO:0006612 | biological_process | protein targeting to membrane | 0.019424009 | 1 | 24 |
Module315 | 11 | 91 | GO:0016893 | molecular_function | endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | 0.019941327 | 1 | 33 |
Module315 | 11 | 92 | GO:0045036 | biological_process | protein targeting to chloroplast | 0.020225847 | 1 | 25 |
Module315 | 11 | 93 | GO:0072596 | biological_process | establishment of protein localization to chloroplast | 0.020225847 | 1 | 25 |
Module315 | 11 | 94 | GO:0072598 | biological_process | protein localization to chloroplast | 0.020225847 | 1 | 25 |
Module315 | 11 | 95 | GO:0032259 | biological_process | methylation | 0.0204869 | 2 | 277 |
Module315 | 11 | 96 | GO:0042646 | cellular_component | plastid nucleoid | 0.020661393 | 1 | 22 |
Module315 | 11 | 97 | GO:0004521 | molecular_function | endoribonuclease activity | 0.021138308 | 1 | 35 |
Module315 | 11 | 98 | GO:0034622 | biological_process | cellular macromolecular complex assembly | 0.02132863 | 2 | 283 |
Module315 | 11 | 99 | GO:0006461 | biological_process | protein complex assembly | 0.023055622 | 2 | 295 |
Module315 | 11 | 100 | GO:0070271 | biological_process | protein complex biogenesis | 0.023349039 | 2 | 297 |
Module315 | 11 | 101 | GO:0001510 | biological_process | RNA methylation | 0.024226108 | 1 | 30 |
Module315 | 11 | 102 | GO:0065003 | biological_process | macromolecular complex assembly | 0.025906487 | 2 | 314 |
Module315 | 11 | 103 | GO:0003676 | molecular_function | nucleic acid binding | 0.026600863 | 5 | 3117 |
Module315 | 11 | 104 | GO:0090150 | biological_process | establishment of protein localization to membrane | 0.027415619 | 1 | 34 |
Module315 | 11 | 105 | GO:0072657 | biological_process | protein localization to membrane | 0.027415619 | 1 | 34 |
Module315 | 11 | 106 | GO:0006091 | biological_process | generation of precursor metabolites and energy | 0.029868854 | 2 | 339 |
Module315 | 11 | 107 | GO:0004540 | molecular_function | ribonuclease activity | 0.030666897 | 1 | 51 |
Module315 | 11 | 108 | GO:0044743 | biological_process | intracellular protein transmembrane import | 0.032182119 | 1 | 40 |
Module315 | 11 | 109 | GO:0071822 | biological_process | protein complex subunit organization | 0.032696015 | 2 | 356 |
Module315 | 11 | 110 | GO:0009737 | biological_process | response to abscisic acid | 0.033205816 | 2 | 359 |
Module315 | 11 | 111 | GO:1901700 | biological_process | response to oxygen-containing compound | 0.033642852 | 3 | 910 |
Module315 | 11 | 112 | GO:0098797 | cellular_component | plasma membrane protein complex | 0.034527578 | 1 | 37 |
Module315 | 11 | 113 | GO:0009295 | cellular_component | nucleoid | 0.034527578 | 1 | 37 |
Module315 | 11 | 114 | GO:0065002 | biological_process | intracellular protein transmembrane transport | 0.034557396 | 1 | 43 |
Module315 | 11 | 115 | GO:0071806 | biological_process | protein transmembrane transport | 0.034557396 | 1 | 43 |
Module315 | 11 | 116 | GO:0070011 | molecular_function | peptidase activity, acting on L-amino acid peptides | 0.03574319 | 2 | 502 |
Module315 | 11 | 117 | GO:0008565 | molecular_function | protein transporter activity | 0.03657979 | 1 | 61 |
Module315 | 11 | 118 | GO:0009706 | cellular_component | chloroplast inner membrane | 0.039110218 | 1 | 42 |
Module315 | 11 | 119 | GO:0044446 | cellular_component | intracellular organelle part | 0.039985882 | 6 | 3055 |
Module315 | 11 | 120 | GO:0044422 | cellular_component | organelle part | 0.040295787 | 6 | 3060 |
Module315 | 11 | 121 | GO:0009528 | cellular_component | plastid inner membrane | 0.040937786 | 1 | 44 |
Module315 | 11 | 122 | GO:0008233 | molecular_function | peptidase activity | 0.041271544 | 2 | 543 |
Module315 | 11 | 123 | GO:0004519 | molecular_function | endonuclease activity | 0.04128671 | 1 | 69 |
Module315 | 11 | 124 | GO:0006364 | biological_process | rRNA processing | 0.041651465 | 1 | 52 |
Module315 | 11 | 125 | GO:0097305 | biological_process | response to alcohol | 0.041978071 | 2 | 408 |
Module315 | 11 | 126 | GO:0050896 | biological_process | response to stimulus | 0.04245237 | 6 | 3528 |
Module315 | 11 | 127 | GO:0022607 | biological_process | cellular component assembly | 0.042730118 | 2 | 412 |
Module315 | 11 | 128 | GO:0044424 | cellular_component | intracellular part | 0.043542985 | 10 | 7715 |
Module315 | 11 | 129 | GO:0017038 | biological_process | protein import | 0.044005603 | 1 | 55 |
Module315 | 11 | 130 | GO:0016072 | biological_process | rRNA metabolic process | 0.045572106 | 1 | 57 |
Module315 | 11 | 131 | GO:0051254 | biological_process | positive regulation of RNA metabolic process | 0.047917486 | 1 | 60 |
Module315 | 11 | 132 | GO:0045893 | biological_process | positive regulation of transcription, DNA-templated | 0.047917486 | 1 | 60 |
Module315 | 11 | 133 | GO:1903508 | biological_process | positive regulation of nucleic acid-templated transcription | 0.047917486 | 1 | 60 |
Module315 | 11 | 134 | GO:1902680 | biological_process | positive regulation of RNA biosynthetic process | 0.047917486 | 1 | 60 |
Module315 | 11 | 135 | GO:0033993 | biological_process | response to lipid | 0.049331174 | 2 | 446 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
GRMZM2G026371 | GRMZM2G068715 | 0.0449 |
GRMZM2G026371 | GRMZM2G445057 | 0.0562 |
GRMZM2G026371 | tha4 | 0.0375 |
GRMZM2G049547 | GRMZM2G007907 | 0.0421 |
GRMZM2G007907 | GRMZM2G077632 | 0.0389 |
GRMZM2G068715 | GRMZM2G077632 | 0.038 |
GRMZM2G068715 | rnp1 | 0.051 |
GRMZM2G068715 | GRMZM2G445057 | 0.0458 |
GRMZM2G077632 | GRMZM2G097282 | 0.0391 |
GRMZM2G077632 | GRMZM2G445057 | 0.0476 |
GRMZM2G445057 | GRMZM2G002642 | 0.0357 |
GRMZM2G445057 | ptac2 | 0.0355 |