This page contains information for Module322, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
GRMZM2G044359 | Module322 | AT1G67900 | AT1G67900 | Phototropic-responsive NPH3 family protein | |||
GRMZM2G052266 | Module322 | AT2G24580 | AT2G24580 | FAD-dependent oxidoreductase family protein | |||
GRMZM2G053720 | pza03240 | Module322 | AT5G38710 | AT5G38710 | Methylenetetrahydrofolate reductase family protein | ||
GRMZM2G082032 | Module322 | AT3G16150 | ASPGB1 | asparaginase B1 | N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein | ||
GRMZM2G117956 | Module322 | AT5G38710 | AT5G38710 | Methylenetetrahydrofolate reductase family protein | |||
GRMZM2G056903 | Module322 | AT5G07620 | AT5G07620 | Protein kinase superfamily protein | |||
GRMZM2G339699 | Module322 | AT2G16570 | ASE1 | GLN phosphoribosyl pyrophosphate amidotransferase 1 | GLN phosphoribosyl pyrophosphate amidotransferase 1 | ||
GRMZM2G357834 | Module322 | AT5G01740 | AT5G01740 | Nuclear transport factor 2 (NTF2) family protein | |||
GRMZM2G366688 | Module322 | ||||||
GRMZM2G141299 | wrky103 | Module322 | AT1G29280 | WRKY65 | WRKY DNA-binding protein 65 | WRKY DNA-binding protein 65 | WRKY |
GRMZM2G531230 | Module322 | AT3G16150 | ASPGB1 | asparaginase B1 | N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module322 | 11 | 1 | GO:0004657 | molecular_function | proline dehydrogenase activity | 2.08E-07 | 2 | 2 |
Module322 | 11 | 2 | GO:0006562 | biological_process | proline catabolic process | 4.96E-07 | 2 | 3 |
Module322 | 11 | 3 | GO:0006537 | biological_process | glutamate biosynthetic process | 1.65E-06 | 2 | 5 |
Module322 | 11 | 4 | GO:0043650 | biological_process | dicarboxylic acid biosynthetic process | 1.29E-05 | 2 | 13 |
Module322 | 11 | 5 | GO:0009065 | biological_process | glutamine family amino acid catabolic process | 1.29E-05 | 2 | 13 |
Module322 | 11 | 6 | GO:0006560 | biological_process | proline metabolic process | 1.73E-05 | 2 | 15 |
Module322 | 11 | 7 | GO:0006536 | biological_process | glutamate metabolic process | 2.52E-05 | 2 | 18 |
Module322 | 11 | 8 | GO:0009084 | biological_process | glutamine family amino acid biosynthetic process | 6.21E-05 | 2 | 28 |
Module322 | 11 | 9 | GO:0016645 | molecular_function | oxidoreductase activity, acting on the CH-NH group of donors | 7.26E-05 | 2 | 27 |
Module322 | 11 | 10 | GO:1901606 | biological_process | alpha-amino acid catabolic process | 0.000192485 | 2 | 49 |
Module322 | 11 | 11 | GO:0009064 | biological_process | glutamine family amino acid metabolic process | 0.000208606 | 2 | 51 |
Module322 | 11 | 12 | GO:0009063 | biological_process | cellular amino acid catabolic process | 0.000216907 | 2 | 52 |
Module322 | 11 | 13 | GO:0046700 | biological_process | heterocycle catabolic process | 0.000382467 | 2 | 69 |
Module322 | 11 | 14 | GO:0043648 | biological_process | dicarboxylic acid metabolic process | 0.000393638 | 2 | 70 |
Module322 | 11 | 15 | GO:0016054 | biological_process | organic acid catabolic process | 0.000566632 | 2 | 84 |
Module322 | 11 | 16 | GO:0046395 | biological_process | carboxylic acid catabolic process | 0.000566632 | 2 | 84 |
Module322 | 11 | 17 | GO:1901361 | biological_process | organic cyclic compound catabolic process | 0.000709076 | 2 | 94 |
Module322 | 11 | 18 | GO:0044282 | biological_process | small molecule catabolic process | 0.000934722 | 2 | 108 |
Module322 | 11 | 19 | GO:0004067 | molecular_function | asparaginase activity | 0.000975164 | 1 | 2 |
Module322 | 11 | 20 | GO:1901565 | biological_process | organonitrogen compound catabolic process | 0.001022681 | 2 | 113 |
Module322 | 11 | 21 | GO:0004044 | molecular_function | amidophosphoribosyltransferase activity | 0.001462434 | 1 | 3 |
Module322 | 11 | 22 | GO:1901607 | biological_process | alpha-amino acid biosynthetic process | 0.002036591 | 2 | 160 |
Module322 | 11 | 23 | GO:0008652 | biological_process | cellular amino acid biosynthetic process | 0.003381907 | 2 | 207 |
Module322 | 11 | 24 | GO:0006189 | biological_process | 'de novo' IMP biosynthetic process | 0.00400118 | 1 | 9 |
Module322 | 11 | 25 | GO:0009113 | biological_process | purine nucleobase biosynthetic process | 0.004888517 | 1 | 11 |
Module322 | 11 | 26 | GO:1901605 | biological_process | alpha-amino acid metabolic process | 0.005729485 | 2 | 271 |
Module322 | 11 | 27 | GO:0006188 | biological_process | IMP biosynthetic process | 0.005775195 | 1 | 13 |
Module322 | 11 | 28 | GO:0046040 | biological_process | IMP metabolic process | 0.005775195 | 1 | 13 |
Module322 | 11 | 29 | GO:0044712 | biological_process | single-organism catabolic process | 0.006625791 | 2 | 292 |
Module322 | 11 | 30 | GO:0006144 | biological_process | purine nucleobase metabolic process | 0.006661215 | 1 | 15 |
Module322 | 11 | 31 | GO:0046112 | biological_process | nucleobase biosynthetic process | 0.009757104 | 1 | 22 |
Module322 | 11 | 32 | GO:0006979 | biological_process | response to oxidative stress | 0.011657475 | 2 | 391 |
Module322 | 11 | 33 | GO:0044711 | biological_process | single-organism biosynthetic process | 0.012678427 | 3 | 1244 |
Module322 | 11 | 34 | GO:0009112 | biological_process | nucleobase metabolic process | 0.012844948 | 1 | 29 |
Module322 | 11 | 35 | GO:0016811 | molecular_function | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides | 0.014540354 | 1 | 30 |
Module322 | 11 | 36 | GO:0006520 | biological_process | cellular amino acid metabolic process | 0.014685942 | 2 | 441 |
Module322 | 11 | 37 | GO:1901566 | biological_process | organonitrogen compound biosynthetic process | 0.014789576 | 3 | 1315 |
Module322 | 11 | 38 | GO:0016053 | biological_process | organic acid biosynthetic process | 0.015394553 | 2 | 452 |
Module322 | 11 | 39 | GO:0046394 | biological_process | carboxylic acid biosynthetic process | 0.015394553 | 2 | 452 |
Module322 | 11 | 40 | GO:0044248 | biological_process | cellular catabolic process | 0.016653849 | 2 | 471 |
Module322 | 11 | 41 | GO:0044281 | biological_process | small molecule metabolic process | 0.020552419 | 3 | 1482 |
Module322 | 11 | 42 | GO:0055114 | biological_process | oxidation-reduction process | 0.021049182 | 3 | 1495 |
Module322 | 11 | 43 | GO:0046483 | biological_process | heterocycle metabolic process | 0.021144355 | 4 | 2866 |
Module322 | 11 | 44 | GO:0005739 | cellular_component | mitochondrion | 0.021276132 | 2 | 916 |
Module322 | 11 | 45 | GO:0016763 | molecular_function | transferase activity, transferring pentosyl groups | 0.0222193 | 1 | 46 |
Module322 | 11 | 46 | GO:0044283 | biological_process | small molecule biosynthetic process | 0.02336725 | 2 | 563 |
Module322 | 11 | 47 | GO:1901360 | biological_process | organic cyclic compound metabolic process | 0.024878232 | 4 | 2999 |
Module322 | 11 | 48 | GO:1901575 | biological_process | organic substance catabolic process | 0.026510745 | 2 | 602 |
Module322 | 11 | 49 | GO:0009056 | biological_process | catabolic process | 0.030612889 | 2 | 650 |
Module322 | 11 | 50 | GO:0009168 | biological_process | purine ribonucleoside monophosphate biosynthetic process | 0.030770215 | 1 | 70 |
Module322 | 11 | 51 | GO:0009127 | biological_process | purine nucleoside monophosphate biosynthetic process | 0.030770215 | 1 | 70 |
Module322 | 11 | 52 | GO:0009965 | biological_process | leaf morphogenesis | 0.032071098 | 1 | 73 |
Module322 | 11 | 53 | GO:1901564 | biological_process | organonitrogen compound metabolic process | 0.033701862 | 3 | 1779 |
Module322 | 11 | 54 | GO:0016810 | molecular_function | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | 0.034585948 | 1 | 72 |
Module322 | 11 | 55 | GO:0009156 | biological_process | ribonucleoside monophosphate biosynthetic process | 0.034668498 | 1 | 79 |
Module322 | 11 | 56 | GO:0016491 | molecular_function | oxidoreductase activity | 0.034900227 | 3 | 1587 |
Module322 | 11 | 57 | GO:0009124 | biological_process | nucleoside monophosphate biosynthetic process | 0.035965018 | 1 | 82 |
Module322 | 11 | 58 | GO:0046148 | biological_process | pigment biosynthetic process | 0.039845875 | 1 | 91 |
Module322 | 11 | 59 | GO:0009152 | biological_process | purine ribonucleotide biosynthetic process | 0.039845875 | 1 | 91 |
Module322 | 11 | 60 | GO:0006164 | biological_process | purine nucleotide biosynthetic process | 0.041566517 | 1 | 95 |
Module322 | 11 | 61 | GO:0009260 | biological_process | ribonucleotide biosynthetic process | 0.044142661 | 1 | 101 |
Module322 | 11 | 62 | GO:0046390 | biological_process | ribose phosphate biosynthetic process | 0.044142661 | 1 | 101 |
Module322 | 11 | 63 | GO:0044249 | biological_process | cellular biosynthetic process | 0.044918392 | 4 | 3546 |
Module322 | 11 | 64 | GO:1901576 | biological_process | organic substance biosynthetic process | 0.047611528 | 4 | 3606 |
Module322 | 11 | 65 | GO:0003824 | molecular_function | catalytic activity | 0.048012963 | 7 | 8627 |
Module322 | 11 | 66 | GO:0009887 | biological_process | organ morphogenesis | 0.048423411 | 1 | 111 |
Module322 | 11 | 67 | GO:0072522 | biological_process | purine-containing compound biosynthetic process | 0.049277641 | 1 | 113 |
Module322 | 11 | 68 | GO:0010016 | biological_process | shoot system morphogenesis | 0.049704516 | 1 | 114 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
GRMZM2G044359 | GRMZM2G357834 | 0.0384 |
GRMZM2G052266 | GRMZM2G117956 | 0.055 |
pza03240 | GRMZM2G082032 | 0.0526 |
pza03240 | GRMZM2G117956 | 0.0745 |
GRMZM2G082032 | GRMZM2G339699 | 0.0362 |
GRMZM2G082032 | GRMZM2G531230 | 0.1557 |
GRMZM2G117956 | GRMZM2G056903 | 0.0386 |
GRMZM2G357834 | GRMZM2G531230 | 0.0489 |
GRMZM2G366688 | wrky103 | 0.0354 |
GRMZM2G366688 | GRMZM2G531230 | 0.0522 |