This page contains information for Module331, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
GRMZM2G074604 | pal1 | Module331 | AT2G37040 | PAL1 | PHE ammonia lyase 1 | PHE ammonia lyase 1 | |
GRMZM2G029048 | pal9 | Module331 | AT2G37040 | PAL1 | PHE ammonia lyase 1 | PHE ammonia lyase 1 | |
GRMZM2G081582 | pal5 | Module331 | AT2G37040 | PAL1 | PHE ammonia lyase 1 | PHE ammonia lyase 1 | |
GRMZM2G117707 | Module331 | AT1G22410 | AT1G22410 | Class-II DAHP synthetase family protein | |||
GRMZM2G122251 | Module331 | AT5G62680 | GTR2 | GLUCOSINOLATE TRANSPORTER-2 | Major facilitator superfamily protein | ||
GRMZM2G099363 | omt2 | Module331 | AT4G34050 | CCoAOMT1 | caffeoyl coenzyme A O-methyltransferase 1 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | |
GRMZM2G127386 | Module331 | AT1G69230 | SP1L2 | SPIRAL1-like2 | SPIRAL1-like2 | ||
GRMZM2G127948 | omt1 | Module331 | AT4G34050 | CCoAOMT1 | caffeoyl coenzyme A O-methyltransferase 1 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | |
GRMZM2G160541 | pal3 | Module331 | AT3G10340 | PAL4 | phenylalanine ammonia-lyase 4 | phenylalanine ammonia-lyase 4 | |
GRMZM2G332522 | omt4 | Module331 | AT4G34050 | CCoAOMT1 | caffeoyl coenzyme A O-methyltransferase 1 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | |
GRMZM2G441347 | pal2 | Module331 | AT3G53260 | PAL2 | phenylalanine ammonia-lyase 2 | phenylalanine ammonia-lyase 2 |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module331 | 11 | 1 | GO:0045548 | molecular_function | phenylalanine ammonia-lyase activity | 1.43E-15 | 5 | 8 |
Module331 | 11 | 2 | GO:0009699 | biological_process | phenylpropanoid biosynthetic process | 5.39E-15 | 7 | 57 |
Module331 | 11 | 3 | GO:0009800 | biological_process | cinnamic acid biosynthetic process | 6.98E-15 | 5 | 8 |
Module331 | 11 | 4 | GO:0009803 | biological_process | cinnamic acid metabolic process | 6.98E-15 | 5 | 8 |
Module331 | 11 | 5 | GO:1902222 | biological_process | erythrose 4-phosphate/phosphoenolpyruvate family amino acid catabolic process | 3.14E-14 | 5 | 10 |
Module331 | 11 | 6 | GO:0006559 | biological_process | L-phenylalanine catabolic process | 3.14E-14 | 5 | 10 |
Module331 | 11 | 7 | GO:0009698 | biological_process | phenylpropanoid metabolic process | 4.87E-14 | 7 | 77 |
Module331 | 11 | 8 | GO:0016841 | molecular_function | ammonia-lyase activity | 7.63E-14 | 5 | 15 |
Module331 | 11 | 9 | GO:0044550 | biological_process | secondary metabolite biosynthetic process | 9.16E-14 | 7 | 84 |
Module331 | 11 | 10 | GO:0009074 | biological_process | aromatic amino acid family catabolic process | 9.86E-14 | 5 | 12 |
Module331 | 11 | 11 | GO:0042537 | biological_process | benzene-containing compound metabolic process | 5.43E-13 | 5 | 16 |
Module331 | 11 | 12 | GO:0019748 | biological_process | secondary metabolic process | 1.06E-12 | 7 | 118 |
Module331 | 11 | 13 | GO:1902221 | biological_process | erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process | 1.44E-12 | 5 | 19 |
Module331 | 11 | 14 | GO:0006558 | biological_process | L-phenylalanine metabolic process | 1.44E-12 | 5 | 19 |
Module331 | 11 | 15 | GO:0016840 | molecular_function | carbon-nitrogen lyase activity | 1.67E-12 | 5 | 26 |
Module331 | 11 | 16 | GO:0009072 | biological_process | aromatic amino acid family metabolic process | 1.63E-11 | 6 | 80 |
Module331 | 11 | 17 | GO:1901606 | biological_process | alpha-amino acid catabolic process | 2.34E-10 | 5 | 49 |
Module331 | 11 | 18 | GO:0009063 | biological_process | cellular amino acid catabolic process | 3.19E-10 | 5 | 52 |
Module331 | 11 | 19 | GO:0016054 | biological_process | organic acid catabolic process | 3.74E-09 | 5 | 84 |
Module331 | 11 | 20 | GO:0046395 | biological_process | carboxylic acid catabolic process | 3.74E-09 | 5 | 84 |
Module331 | 11 | 21 | GO:0019439 | biological_process | aromatic compound catabolic process | 4.22E-09 | 5 | 86 |
Module331 | 11 | 22 | GO:1901361 | biological_process | organic cyclic compound catabolic process | 6.63E-09 | 5 | 94 |
Module331 | 11 | 23 | GO:0044282 | biological_process | small molecule catabolic process | 1.34E-08 | 5 | 108 |
Module331 | 11 | 24 | GO:1901565 | biological_process | organonitrogen compound catabolic process | 1.68E-08 | 5 | 113 |
Module331 | 11 | 25 | GO:0042409 | molecular_function | caffeoyl-CoA O-methyltransferase activity | 3.34E-07 | 2 | 2 |
Module331 | 11 | 26 | GO:0006520 | biological_process | cellular amino acid metabolic process | 4.77E-07 | 6 | 441 |
Module331 | 11 | 27 | GO:0072330 | biological_process | monocarboxylic acid biosynthetic process | 5.40E-07 | 5 | 226 |
Module331 | 11 | 28 | GO:0016053 | biological_process | organic acid biosynthetic process | 5.52E-07 | 6 | 452 |
Module331 | 11 | 29 | GO:0046394 | biological_process | carboxylic acid biosynthetic process | 5.52E-07 | 6 | 452 |
Module331 | 11 | 30 | GO:0016829 | molecular_function | lyase activity | 6.37E-07 | 5 | 320 |
Module331 | 11 | 31 | GO:0044711 | biological_process | single-organism biosynthetic process | 6.61E-07 | 8 | 1244 |
Module331 | 11 | 32 | GO:1901605 | biological_process | alpha-amino acid metabolic process | 1.33E-06 | 5 | 271 |
Module331 | 11 | 33 | GO:0008171 | molecular_function | O-methyltransferase activity | 1.47E-06 | 3 | 39 |
Module331 | 11 | 34 | GO:0009804 | biological_process | coumarin metabolic process | 1.82E-06 | 2 | 3 |
Module331 | 11 | 35 | GO:0009805 | biological_process | coumarin biosynthetic process | 1.82E-06 | 2 | 3 |
Module331 | 11 | 36 | GO:0044712 | biological_process | single-organism catabolic process | 1.92E-06 | 5 | 292 |
Module331 | 11 | 37 | GO:0044283 | biological_process | small molecule biosynthetic process | 2.00E-06 | 6 | 563 |
Module331 | 11 | 38 | GO:0032787 | biological_process | monocarboxylic acid metabolic process | 1.02E-05 | 5 | 411 |
Module331 | 11 | 39 | GO:0019438 | biological_process | aromatic compound biosynthetic process | 1.22E-05 | 8 | 1817 |
Module331 | 11 | 40 | GO:1901362 | biological_process | organic cyclic compound biosynthetic process | 1.88E-05 | 8 | 1924 |
Module331 | 11 | 41 | GO:0044248 | biological_process | cellular catabolic process | 1.98E-05 | 5 | 471 |
Module331 | 11 | 42 | GO:0019752 | biological_process | carboxylic acid metabolic process | 3.37E-05 | 6 | 918 |
Module331 | 11 | 43 | GO:0043436 | biological_process | oxoacid metabolic process | 3.72E-05 | 6 | 934 |
Module331 | 11 | 44 | GO:0006082 | biological_process | organic acid metabolic process | 3.77E-05 | 6 | 936 |
Module331 | 11 | 45 | GO:1901575 | biological_process | organic substance catabolic process | 6.46E-05 | 5 | 602 |
Module331 | 11 | 46 | GO:0009056 | biological_process | catabolic process | 9.32E-05 | 5 | 650 |
Module331 | 11 | 47 | GO:0009809 | biological_process | lignin biosynthetic process | 0.000243 | 2 | 29 |
Module331 | 11 | 48 | GO:0006725 | biological_process | cellular aromatic compound metabolic process | 0.000408943 | 8 | 2909 |
Module331 | 11 | 49 | GO:0044281 | biological_process | small molecule metabolic process | 0.000495718 | 6 | 1482 |
Module331 | 11 | 50 | GO:1901360 | biological_process | organic cyclic compound metabolic process | 0.000510641 | 8 | 2999 |
Module331 | 11 | 51 | GO:0008168 | molecular_function | methyltransferase activity | 0.000580583 | 3 | 287 |
Module331 | 11 | 52 | GO:0009808 | biological_process | lignin metabolic process | 0.000588329 | 2 | 45 |
Module331 | 11 | 53 | GO:0016741 | molecular_function | transferase activity, transferring one-carbon groups | 0.000673541 | 3 | 302 |
Module331 | 11 | 54 | GO:0032259 | biological_process | methylation | 0.001254302 | 3 | 277 |
Module331 | 11 | 55 | GO:0008757 | molecular_function | S-adenosylmethionine-dependent methyltransferase activity | 0.001301788 | 2 | 90 |
Module331 | 11 | 56 | GO:1901564 | biological_process | organonitrogen compound metabolic process | 0.001338643 | 6 | 1779 |
Module331 | 11 | 57 | GO:0044249 | biological_process | cellular biosynthetic process | 0.001703755 | 8 | 3546 |
Module331 | 11 | 58 | GO:1901576 | biological_process | organic substance biosynthetic process | 0.001919024 | 8 | 3606 |
Module331 | 11 | 59 | GO:0051211 | biological_process | anisotropic cell growth | 0.002446981 | 1 | 3 |
Module331 | 11 | 60 | GO:0044763 | biological_process | single-organism cellular process | 0.00250147 | 9 | 4840 |
Module331 | 11 | 61 | GO:0009058 | biological_process | biosynthetic process | 0.002577625 | 8 | 3760 |
Module331 | 11 | 62 | GO:0044710 | biological_process | single-organism metabolic process | 0.002786726 | 8 | 3802 |
Module331 | 11 | 63 | GO:0009423 | biological_process | chorismate biosynthetic process | 0.004888517 | 1 | 6 |
Module331 | 11 | 64 | GO:0003849 | molecular_function | 3-deoxy-7-phosphoheptulonate synthase activity | 0.006081042 | 1 | 10 |
Module331 | 11 | 65 | GO:0010005 | cellular_component | cortical microtubule, transverse to long axis | 0.008311249 | 1 | 11 |
Module331 | 11 | 66 | GO:0005876 | cellular_component | spindle microtubule | 0.009063811 | 1 | 12 |
Module331 | 11 | 67 | GO:0043650 | biological_process | dicarboxylic acid biosynthetic process | 0.010564323 | 1 | 13 |
Module331 | 11 | 68 | GO:0009574 | cellular_component | preprophase band | 0.0113185 | 1 | 15 |
Module331 | 11 | 69 | GO:0055028 | cellular_component | cortical microtubule | 0.0113185 | 1 | 15 |
Module331 | 11 | 70 | GO:0005881 | cellular_component | cytoplasmic microtubule | 0.0113185 | 1 | 15 |
Module331 | 11 | 71 | GO:0046417 | biological_process | chorismate metabolic process | 0.011372746 | 1 | 14 |
Module331 | 11 | 72 | GO:0043622 | biological_process | cortical microtubule organization | 0.011372746 | 1 | 14 |
Module331 | 11 | 73 | GO:0071472 | biological_process | cellular response to salt stress | 0.011372746 | 1 | 14 |
Module331 | 11 | 74 | GO:0031122 | biological_process | cytoplasmic microtubule organization | 0.011372746 | 1 | 14 |
Module331 | 11 | 75 | GO:0030981 | cellular_component | cortical microtubule cytoskeleton | 0.012819131 | 1 | 17 |
Module331 | 11 | 76 | GO:0030865 | biological_process | cortical cytoskeleton organization | 0.01298779 | 1 | 16 |
Module331 | 11 | 77 | GO:0030863 | cellular_component | cortical cytoskeleton | 0.013568699 | 1 | 18 |
Module331 | 11 | 78 | GO:0003824 | molecular_function | catalytic activity | 0.01618351 | 9 | 8627 |
Module331 | 11 | 79 | GO:0071470 | biological_process | cellular response to osmotic stress | 0.017014911 | 1 | 21 |
Module331 | 11 | 80 | GO:0005819 | cellular_component | spindle | 0.037293441 | 1 | 50 |
Module331 | 11 | 81 | GO:0044448 | cellular_component | cell cortex part | 0.038759515 | 1 | 52 |
Module331 | 11 | 82 | GO:0099568 | cellular_component | cytoplasmic region | 0.040223635 | 1 | 54 |
Module331 | 11 | 83 | GO:0005938 | cellular_component | cell cortex | 0.040223635 | 1 | 54 |
Module331 | 11 | 84 | GO:0009073 | biological_process | aromatic amino acid family biosynthetic process | 0.043221475 | 1 | 54 |
Module331 | 11 | 85 | GO:0044699 | biological_process | single-organism process | 0.043887028 | 9 | 7015 |
Module331 | 11 | 86 | GO:0000226 | biological_process | microtubule cytoskeleton organization | 0.045572106 | 1 | 57 |
Module331 | 11 | 87 | GO:0046686 | biological_process | response to cadmium ion | 0.046763773 | 2 | 433 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
pal1 | pal9 | 0.0594 |
pal1 | pal5 | 0.052 |
pal1 | GRMZM2G117707 | 0.0412 |
pal1 | GRMZM2G127386 | 0.0378 |
pal1 | omt1 | 0.0455 |
pal1 | pal3 | 0.0513 |
pal1 | omt4 | 0.0369 |
pal1 | pal2 | 0.0531 |
pal9 | pal5 | 0.0741 |
pal5 | GRMZM2G117707 | 0.0366 |
GRMZM2G117707 | pal2 | 0.035 |
GRMZM2G122251 | omt2 | 0.0377 |
omt2 | omt1 | 0.0465 |
pal3 | pal2 | 0.0471 |