This page contains information for Module342, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
GRMZM2G004334 | hb10 | Module342 | AT1G73360 | HDG11 | homeodomain GLABROUS 11 | homeodomain GLABROUS 11 | HB |
GRMZM2G049418 | ga20ox5 | Module342 | AT4G25420 | GA20OX1 | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | ||
GRMZM2G062318 | Module342 | AT1G73360 | HDG11 | homeodomain GLABROUS 11 | homeodomain GLABROUS 11 | HB | |
GRMZM2G124423 | Module342 | AT3G18930 | AT3G18930 | RING/U-box superfamily protein | |||
GRMZM2G067235 | Module342 | AT5G11000 | AT5G11000 | Plant protein of unknown function (DUF868) | |||
GRMZM2G126646 | hb83 | Module342 | AT1G73360 | HDG11 | homeodomain GLABROUS 11 | homeodomain GLABROUS 11 | HB |
GRMZM2G145690 | hb71 | Module342 | AT1G73360 | HDG11 | homeodomain GLABROUS 11 | homeodomain GLABROUS 11 | HB |
GRMZM2G006505 | Module342 | AT1G68400 | AT1G68400 | leucine-rich repeat transmembrane protein kinase family protein | |||
GRMZM2G552966 | Module342 | AT5G52900 | MAKR6 | MEMBRANE-ASSOCIATED KINASE REGULATOR 6 | |||
GRMZM2G701066 | Module342 |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module342 | 10 | 1 | GO:0010091 | biological_process | trichome branching | 2.79E-08 | 3 | 20 |
Module342 | 10 | 2 | GO:0000902 | biological_process | cell morphogenesis | 4.15E-07 | 4 | 231 |
Module342 | 10 | 3 | GO:0010090 | biological_process | trichome morphogenesis | 4.22E-07 | 3 | 48 |
Module342 | 10 | 4 | GO:0032989 | biological_process | cellular component morphogenesis | 5.98E-07 | 4 | 253 |
Module342 | 10 | 5 | GO:0010026 | biological_process | trichome differentiation | 7.13E-07 | 3 | 57 |
Module342 | 10 | 6 | GO:0090626 | biological_process | plant epidermis morphogenesis | 9.21E-07 | 3 | 62 |
Module342 | 10 | 7 | GO:0048869 | biological_process | cellular developmental process | 4.08E-06 | 4 | 409 |
Module342 | 10 | 8 | GO:0000904 | biological_process | cell morphogenesis involved in differentiation | 1.13E-05 | 3 | 142 |
Module342 | 10 | 9 | GO:0009653 | biological_process | anatomical structure morphogenesis | 1.19E-05 | 4 | 535 |
Module342 | 10 | 10 | GO:0090558 | biological_process | plant epidermis development | 1.55E-05 | 3 | 158 |
Module342 | 10 | 11 | GO:0048468 | biological_process | cell development | 2.88E-05 | 3 | 194 |
Module342 | 10 | 12 | GO:0030154 | biological_process | cell differentiation | 0.000106721 | 3 | 301 |
Module342 | 10 | 13 | GO:0009888 | biological_process | tissue development | 0.000156004 | 3 | 342 |
Module342 | 10 | 14 | GO:0016043 | biological_process | cellular component organization | 0.000401636 | 4 | 1303 |
Module342 | 10 | 15 | GO:0043565 | molecular_function | sequence-specific DNA binding | 0.000411356 | 3 | 460 |
Module342 | 10 | 16 | GO:0048856 | biological_process | anatomical structure development | 0.000541072 | 4 | 1406 |
Module342 | 10 | 17 | GO:0071840 | biological_process | cellular component organization or biogenesis | 0.00058606 | 4 | 1435 |
Module342 | 10 | 18 | GO:0044767 | biological_process | single-organism developmental process | 0.000768367 | 4 | 1538 |
Module342 | 10 | 19 | GO:0032502 | biological_process | developmental process | 0.000859878 | 4 | 1583 |
Module342 | 10 | 20 | GO:0045544 | molecular_function | gibberellin 20-oxidase activity | 0.001096959 | 1 | 3 |
Module342 | 10 | 21 | GO:0003700 | molecular_function | transcription factor activity, sequence-specific DNA binding | 0.001307804 | 3 | 683 |
Module342 | 10 | 22 | GO:0001071 | molecular_function | nucleic acid binding transcription factor activity | 0.00131338 | 3 | 684 |
Module342 | 10 | 23 | GO:0048575 | biological_process | short-day photoperiodism, flowering | 0.002224528 | 1 | 6 |
Module342 | 10 | 24 | GO:0048496 | biological_process | maintenance of organ identity | 0.002594898 | 1 | 7 |
Module342 | 10 | 25 | GO:0048497 | biological_process | maintenance of floral organ identity | 0.002594898 | 1 | 7 |
Module342 | 10 | 26 | GO:0048572 | biological_process | short-day photoperiodism | 0.002965157 | 1 | 8 |
Module342 | 10 | 27 | GO:0045596 | biological_process | negative regulation of cell differentiation | 0.003335307 | 1 | 9 |
Module342 | 10 | 28 | GO:0016102 | biological_process | diterpenoid biosynthetic process | 0.004445096 | 1 | 12 |
Module342 | 10 | 29 | GO:0009686 | biological_process | gibberellin biosynthetic process | 0.004445096 | 1 | 12 |
Module342 | 10 | 30 | GO:0009908 | biological_process | flower development | 0.004571804 | 2 | 295 |
Module342 | 10 | 31 | GO:0090567 | biological_process | reproductive shoot system development | 0.00497462 | 2 | 308 |
Module342 | 10 | 32 | GO:0009685 | biological_process | gibberellin metabolic process | 0.00703076 | 1 | 19 |
Module342 | 10 | 33 | GO:2001141 | biological_process | regulation of RNA biosynthetic process | 0.007597064 | 3 | 1293 |
Module342 | 10 | 34 | GO:0006355 | biological_process | regulation of transcription, DNA-templated | 0.007597064 | 3 | 1293 |
Module342 | 10 | 35 | GO:1903506 | biological_process | regulation of nucleic acid-templated transcription | 0.007597064 | 3 | 1293 |
Module342 | 10 | 36 | GO:0051252 | biological_process | regulation of RNA metabolic process | 0.007782542 | 3 | 1304 |
Module342 | 10 | 37 | GO:0019219 | biological_process | regulation of nucleobase-containing compound metabolic process | 0.008285075 | 3 | 1333 |
Module342 | 10 | 38 | GO:0016101 | biological_process | diterpenoid metabolic process | 0.008874371 | 1 | 24 |
Module342 | 10 | 39 | GO:0010556 | biological_process | regulation of macromolecule biosynthetic process | 0.009029513 | 3 | 1374 |
Module342 | 10 | 40 | GO:2000112 | biological_process | regulation of cellular macromolecule biosynthetic process | 0.009029513 | 3 | 1374 |
Module342 | 10 | 41 | GO:0031326 | biological_process | regulation of cellular biosynthetic process | 0.009658061 | 3 | 1407 |
Module342 | 10 | 42 | GO:0051171 | biological_process | regulation of nitrogen compound metabolic process | 0.009697006 | 3 | 1409 |
Module342 | 10 | 43 | GO:0010468 | biological_process | regulation of gene expression | 0.009794798 | 3 | 1414 |
Module342 | 10 | 44 | GO:0097659 | biological_process | nucleic acid-templated transcription | 0.009794798 | 3 | 1414 |
Module342 | 10 | 45 | GO:0006351 | biological_process | transcription, DNA-templated | 0.009794798 | 3 | 1414 |
Module342 | 10 | 46 | GO:0032774 | biological_process | RNA biosynthetic process | 0.009893202 | 3 | 1419 |
Module342 | 10 | 47 | GO:0009889 | biological_process | regulation of biosynthetic process | 0.00995254 | 3 | 1422 |
Module342 | 10 | 48 | GO:0005634 | cellular_component | nucleus | 0.012092553 | 3 | 2423 |
Module342 | 10 | 49 | GO:0080090 | biological_process | regulation of primary metabolic process | 0.012170854 | 3 | 1527 |
Module342 | 10 | 50 | GO:0045595 | biological_process | regulation of cell differentiation | 0.01218597 | 1 | 33 |
Module342 | 10 | 51 | GO:0048367 | biological_process | shoot system development | 0.012265034 | 2 | 490 |
Module342 | 10 | 52 | GO:0060255 | biological_process | regulation of macromolecule metabolic process | 0.012283456 | 3 | 1532 |
Module342 | 10 | 53 | GO:0031323 | biological_process | regulation of cellular metabolic process | 0.012786563 | 3 | 1554 |
Module342 | 10 | 54 | GO:0099402 | biological_process | plant organ development | 0.013853842 | 2 | 522 |
Module342 | 10 | 55 | GO:0034654 | biological_process | nucleobase-containing compound biosynthetic process | 0.013854847 | 3 | 1599 |
Module342 | 10 | 56 | GO:0048573 | biological_process | photoperiodism, flowering | 0.017685626 | 1 | 48 |
Module342 | 10 | 57 | GO:0019222 | biological_process | regulation of metabolic process | 0.01814826 | 3 | 1761 |
Module342 | 10 | 58 | GO:0044249 | biological_process | cellular biosynthetic process | 0.018905295 | 4 | 3546 |
Module342 | 10 | 59 | GO:0061458 | biological_process | reproductive system development | 0.019380269 | 2 | 622 |
Module342 | 10 | 60 | GO:0048608 | biological_process | reproductive structure development | 0.019380269 | 2 | 622 |
Module342 | 10 | 61 | GO:0018130 | biological_process | heterocycle biosynthetic process | 0.019408642 | 3 | 1804 |
Module342 | 10 | 62 | GO:0019438 | biological_process | aromatic compound biosynthetic process | 0.019799872 | 3 | 1817 |
Module342 | 10 | 63 | GO:1901576 | biological_process | organic substance biosynthetic process | 0.02012703 | 4 | 3606 |
Module342 | 10 | 64 | GO:0016070 | biological_process | RNA metabolic process | 0.020939466 | 3 | 1854 |
Module342 | 10 | 65 | GO:0009648 | biological_process | photoperiodism | 0.022432155 | 1 | 61 |
Module342 | 10 | 66 | GO:1901362 | biological_process | organic cyclic compound biosynthetic process | 0.023202162 | 3 | 1924 |
Module342 | 10 | 67 | GO:0003677 | molecular_function | DNA binding | 0.023376487 | 3 | 1891 |
Module342 | 10 | 68 | GO:0009058 | biological_process | biosynthetic process | 0.023516678 | 4 | 3760 |
Module342 | 10 | 69 | GO:0051093 | biological_process | negative regulation of developmental process | 0.024616664 | 1 | 67 |
Module342 | 10 | 70 | GO:0016114 | biological_process | terpenoid biosynthetic process | 0.025343965 | 1 | 69 |
Module342 | 10 | 71 | GO:0003006 | biological_process | developmental process involved in reproduction | 0.027641247 | 2 | 750 |
Module342 | 10 | 72 | GO:0009739 | biological_process | response to gibberellin | 0.028973965 | 1 | 79 |
Module342 | 10 | 73 | GO:0044702 | biological_process | single organism reproductive process | 0.029332137 | 2 | 774 |
Module342 | 10 | 74 | GO:0009791 | biological_process | post-embryonic development | 0.032097979 | 2 | 812 |
Module342 | 10 | 75 | GO:0090304 | biological_process | nucleic acid metabolic process | 0.032903279 | 3 | 2185 |
Module342 | 10 | 76 | GO:0006721 | biological_process | terpenoid metabolic process | 0.033315679 | 1 | 91 |
Module342 | 10 | 77 | GO:0016706 | molecular_function | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | 0.034608847 | 1 | 96 |
Module342 | 10 | 78 | GO:0010228 | biological_process | vegetative to reproductive phase transition of meristem | 0.036201517 | 1 | 99 |
Module342 | 10 | 79 | GO:0008299 | biological_process | isoprenoid biosynthetic process | 0.036561762 | 1 | 100 |
Module342 | 10 | 80 | GO:0044237 | biological_process | cellular metabolic process | 0.039243779 | 5 | 7053 |
Module342 | 10 | 81 | GO:0022414 | biological_process | reproductive process | 0.040288155 | 2 | 917 |
Module342 | 10 | 82 | GO:0000003 | biological_process | reproduction | 0.040697682 | 2 | 922 |
Module342 | 10 | 83 | GO:0050794 | biological_process | regulation of cellular process | 0.041541049 | 3 | 2381 |
Module342 | 10 | 84 | GO:0048731 | biological_process | system development | 0.042939009 | 2 | 949 |
Module342 | 10 | 85 | GO:0006720 | biological_process | isoprenoid metabolic process | 0.043385969 | 1 | 119 |
Module342 | 10 | 86 | GO:0048437 | biological_process | floral organ development | 0.047319116 | 1 | 130 |
Module342 | 10 | 87 | GO:0034645 | biological_process | cellular macromolecule biosynthetic process | 0.047722657 | 3 | 2507 |
Module342 | 10 | 88 | GO:0010467 | biological_process | gene expression | 0.047978218 | 3 | 2512 |
Module342 | 10 | 89 | GO:0044271 | biological_process | cellular nitrogen compound biosynthetic process | 0.048697968 | 3 | 2526 |
Module342 | 10 | 90 | GO:0044238 | biological_process | primary metabolic process | 0.048729422 | 5 | 7365 |
Module342 | 10 | 91 | GO:0051213 | molecular_function | dioxygenase activity | 0.048731539 | 1 | 136 |
Module342 | 10 | 92 | GO:0080167 | biological_process | response to karrikin | 0.048746139 | 1 | 134 |
Module342 | 10 | 93 | GO:0009059 | biological_process | macromolecule biosynthetic process | 0.048801293 | 3 | 2528 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
hb10 | GRMZM2G062318 | 0.0636 |
hb10 | hb71 | 0.06 |
hb10 | GRMZM2G701066 | 0.0648 |
ga20ox5 | GRMZM2G124423 | 0.0435 |
ga20ox5 | GRMZM2G552966 | 0.0379 |
GRMZM2G062318 | hb83 | 0.0416 |
GRMZM2G062318 | hb71 | 0.0361 |
GRMZM2G062318 | GRMZM2G701066 | 0.0606 |
GRMZM2G124423 | GRMZM2G067235 | 0.0428 |
GRMZM2G124423 | hb71 | 0.0413 |
hb83 | hb71 | 0.0616 |
hb71 | GRMZM2G006505 | 0.0352 |