This page contains information for Module343, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
GRMZM2G007481 | Module343 | AT1G20925 | AT1G20925 | Auxin efflux carrier family protein | |||
GRMZM2G054969 | Module343 | AT3G60070 | AT3G60070 | Major facilitator superfamily protein | |||
GRMZM2G107739 | Module343 | AT3G08860 | PYD4 | PYRIMIDINE 4 | PYRIMIDINE 4 | ||
GRMZM2G127350 | Module343 | AT3G08860 | PYD4 | PYRIMIDINE 4 | PYRIMIDINE 4 | ||
GRMZM2G129357 | gst6 | Module343 | AT1G78380 | GSTU19 | glutathione S-transferase TAU 19 | glutathione S-transferase TAU 19 | |
GRMZM2G149576 | Module343 | AT2G36630 | AT2G36630 | Sulfite exporter TauE/SafE family protein | |||
GRMZM2G152417 | Module343 | AT3G16910 | AAE7 | acyl-activating enzyme 7 | acyl-activating enzyme 7 | ||
GRMZM2G161905 | gst25 | Module343 | AT1G10370 | ERD9 | EARLY-RESPONSIVE TO DEHYDRATION 9 | Glutathione S-transferase family protein | |
GRMZM2G325131 | ans1 | Module343 | AT1G25083 | AT1G25083 | Glutamine amidotransferase type 1 family protein | ||
GRMZM5G895554 | Module343 | AT3G03900 | APK3 | adenosine-5'-phosphosulfate (APS) kinase 3 | adenosine-5'-phosphosulfate (APS) kinase 3 |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module343 | 10 | 1 | GO:0004364 | molecular_function | glutathione transferase activity | 7.38E-05 | 2 | 37 |
Module343 | 10 | 2 | GO:0016769 | molecular_function | transferase activity, transferring nitrogenous groups | 0.000124827 | 2 | 48 |
Module343 | 10 | 3 | GO:0008483 | molecular_function | transaminase activity | 0.000124827 | 2 | 48 |
Module343 | 10 | 4 | GO:0016765 | molecular_function | transferase activity, transferring alkyl or aryl (other than methyl) groups | 0.000668692 | 2 | 111 |
Module343 | 10 | 5 | GO:0030170 | molecular_function | pyridoxal phosphate binding | 0.000755236 | 2 | 118 |
Module343 | 10 | 6 | GO:0046459 | biological_process | short-chain fatty acid metabolic process | 0.001038653 | 1 | 2 |
Module343 | 10 | 7 | GO:0019605 | biological_process | butyrate metabolic process | 0.001038653 | 1 | 2 |
Module343 | 10 | 8 | GO:0003987 | molecular_function | acetate-CoA ligase activity | 0.001462389 | 1 | 4 |
Module343 | 10 | 9 | GO:0004020 | molecular_function | adenylylsulfate kinase activity | 0.001462389 | 1 | 4 |
Module343 | 10 | 10 | GO:0031668 | biological_process | cellular response to extracellular stimulus | 0.001551369 | 2 | 118 |
Module343 | 10 | 11 | GO:0046487 | biological_process | glyoxylate metabolic process | 0.001557632 | 1 | 3 |
Module343 | 10 | 12 | GO:0006097 | biological_process | glyoxylate cycle | 0.001557632 | 1 | 3 |
Module343 | 10 | 13 | GO:0071496 | biological_process | cellular response to external stimulus | 0.001577497 | 2 | 119 |
Module343 | 10 | 14 | GO:0016740 | molecular_function | transferase activity | 0.001680433 | 5 | 3316 |
Module343 | 10 | 15 | GO:0009991 | biological_process | response to extracellular stimulus | 0.001907484 | 2 | 131 |
Module343 | 10 | 16 | GO:0070813 | biological_process | hydrogen sulfide metabolic process | 0.00207638 | 1 | 4 |
Module343 | 10 | 17 | GO:0070814 | biological_process | hydrogen sulfide biosynthetic process | 0.00207638 | 1 | 4 |
Module343 | 10 | 18 | GO:0006083 | biological_process | acetate metabolic process | 0.00207638 | 1 | 4 |
Module343 | 10 | 19 | GO:1900750 | molecular_function | oligopeptide binding | 0.002192915 | 1 | 6 |
Module343 | 10 | 20 | GO:0043295 | molecular_function | glutathione binding | 0.002192915 | 1 | 6 |
Module343 | 10 | 21 | GO:0006790 | biological_process | sulfur compound metabolic process | 0.002426568 | 2 | 148 |
Module343 | 10 | 22 | GO:1900376 | biological_process | regulation of secondary metabolite biosynthetic process | 0.002594898 | 1 | 5 |
Module343 | 10 | 23 | GO:0009635 | biological_process | response to herbicide | 0.002594898 | 1 | 5 |
Module343 | 10 | 24 | GO:0072341 | molecular_function | modified amino acid binding | 0.002922995 | 1 | 8 |
Module343 | 10 | 25 | GO:0016405 | molecular_function | CoA-ligase activity | 0.003652631 | 1 | 10 |
Module343 | 10 | 26 | GO:0016878 | molecular_function | acid-thiol ligase activity | 0.004381821 | 1 | 12 |
Module343 | 10 | 27 | GO:0042762 | biological_process | regulation of sulfur metabolic process | 0.004666658 | 1 | 9 |
Module343 | 10 | 28 | GO:0010675 | biological_process | regulation of cellular carbohydrate metabolic process | 0.005184022 | 1 | 10 |
Module343 | 10 | 29 | GO:0000103 | biological_process | sulfate assimilation | 0.005701155 | 1 | 11 |
Module343 | 10 | 30 | GO:0009851 | biological_process | auxin biosynthetic process | 0.005701155 | 1 | 11 |
Module343 | 10 | 31 | GO:0043455 | biological_process | regulation of secondary metabolic process | 0.005701155 | 1 | 11 |
Module343 | 10 | 32 | GO:0043562 | biological_process | cellular response to nitrogen levels | 0.006218057 | 1 | 12 |
Module343 | 10 | 33 | GO:0009605 | biological_process | response to external stimulus | 0.00639565 | 3 | 814 |
Module343 | 10 | 34 | GO:0043255 | biological_process | regulation of carbohydrate biosynthetic process | 0.007251171 | 1 | 14 |
Module343 | 10 | 35 | GO:0016144 | biological_process | S-glycoside biosynthetic process | 0.007251171 | 1 | 14 |
Module343 | 10 | 36 | GO:0019761 | biological_process | glucosinolate biosynthetic process | 0.007251171 | 1 | 14 |
Module343 | 10 | 37 | GO:0019758 | biological_process | glycosinolate biosynthetic process | 0.007251171 | 1 | 14 |
Module343 | 10 | 38 | GO:0016877 | molecular_function | ligase activity, forming carbon-sulfur bonds | 0.007657676 | 1 | 21 |
Module343 | 10 | 39 | GO:0042277 | molecular_function | peptide binding | 0.00874763 | 1 | 24 |
Module343 | 10 | 40 | GO:1901681 | molecular_function | sulfur compound binding | 0.00874763 | 1 | 24 |
Module343 | 10 | 41 | GO:0006749 | biological_process | glutathione metabolic process | 0.008799116 | 1 | 17 |
Module343 | 10 | 42 | GO:0033218 | molecular_function | amide binding | 0.009836585 | 1 | 27 |
Module343 | 10 | 43 | GO:0042446 | biological_process | hormone biosynthetic process | 0.010344992 | 1 | 20 |
Module343 | 10 | 44 | GO:0016143 | biological_process | S-glycoside metabolic process | 0.010344992 | 1 | 20 |
Module343 | 10 | 45 | GO:0019760 | biological_process | glucosinolate metabolic process | 0.010344992 | 1 | 20 |
Module343 | 10 | 46 | GO:0019757 | biological_process | glycosinolate metabolic process | 0.010344992 | 1 | 20 |
Module343 | 10 | 47 | GO:0044262 | biological_process | cellular carbohydrate metabolic process | 0.010843097 | 2 | 319 |
Module343 | 10 | 48 | GO:0071462 | biological_process | cellular response to water stimulus | 0.011374427 | 1 | 22 |
Module343 | 10 | 49 | GO:0042631 | biological_process | cellular response to water deprivation | 0.011374427 | 1 | 22 |
Module343 | 10 | 50 | GO:0006109 | biological_process | regulation of carbohydrate metabolic process | 0.011374427 | 1 | 22 |
Module343 | 10 | 51 | GO:0043168 | molecular_function | anion binding | 0.012213215 | 4 | 2999 |
Module343 | 10 | 52 | GO:0048232 | biological_process | male gamete generation | 0.012402944 | 1 | 24 |
Module343 | 10 | 53 | GO:0048037 | molecular_function | cofactor binding | 0.013873008 | 2 | 521 |
Module343 | 10 | 54 | GO:0007276 | biological_process | gamete generation | 0.014970226 | 1 | 29 |
Module343 | 10 | 55 | GO:0009636 | biological_process | response to toxic substance | 0.015995536 | 1 | 31 |
Module343 | 10 | 56 | GO:0009850 | biological_process | auxin metabolic process | 0.016507847 | 1 | 32 |
Module343 | 10 | 57 | GO:0003824 | molecular_function | catalytic activity | 0.02113986 | 6 | 8627 |
Module343 | 10 | 58 | GO:0044723 | biological_process | single-organism carbohydrate metabolic process | 0.027040407 | 2 | 516 |
Module343 | 10 | 59 | GO:0042445 | biological_process | hormone metabolic process | 0.028734931 | 1 | 56 |
Module343 | 10 | 60 | GO:0006081 | biological_process | cellular aldehyde metabolic process | 0.028734931 | 1 | 56 |
Module343 | 10 | 61 | GO:0048609 | biological_process | multicellular organismal reproductive process | 0.034295319 | 1 | 67 |
Module343 | 10 | 62 | GO:0032504 | biological_process | multicellular organism reproduction | 0.036813734 | 1 | 72 |
Module343 | 10 | 63 | GO:0006575 | biological_process | cellular modified amino acid metabolic process | 0.037316741 | 1 | 73 |
Module343 | 10 | 64 | GO:0044550 | biological_process | secondary metabolite biosynthetic process | 0.042834973 | 1 | 84 |
Module343 | 10 | 65 | GO:0071214 | biological_process | cellular response to abiotic stimulus | 0.045833474 | 1 | 90 |
Module343 | 10 | 66 | GO:0031669 | biological_process | cellular response to nutrient levels | 0.04633244 | 1 | 91 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
GRMZM2G007481 | GRMZM2G054969 | 0.0402 |
GRMZM2G054969 | GRMZM2G107739 | 0.0382 |
GRMZM2G107739 | GRMZM2G127350 | 0.1319 |
GRMZM2G107739 | GRMZM2G149576 | 0.0543 |
GRMZM2G107739 | GRMZM5G895554 | 0.0373 |
GRMZM2G127350 | GRMZM2G152417 | 0.0587 |
GRMZM2G127350 | gst25 | 0.0855 |
gst6 | gst25 | 0.0528 |
GRMZM2G149576 | GRMZM5G895554 | 0.0492 |
gst25 | ans1 | 0.0375 |