This page contains information for Module354, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
GRMZM2G025579 | hk5 | Module354 | AT5G10720 | HK5 | histidine kinase 5 | histidine kinase 5 | Orphans |
AC230011.2_FG002 | rp3 | Module354 | AT3G14460 | AT3G14460 | LRR and NB-ARC domains-containing disease resistance protein | ||
GRMZM2G043489 | Module354 | AT1G74160 | TRM4 | TON1 Recruiting Motif 4 | |||
AC231180.2_FG001 | Module354 | AT2G46380 | AT2G46380 | Protein of unknown function (DUF3133) | |||
GRMZM2G113815 | Module354 | AT3G16850 | AT3G16850 | Pectin lyase-like superfamily protein | |||
GRMZM2G137211 | Module354 | AT2G42320 | AT2G42320 | nucleolar protein gar2-related | |||
GRMZM2G163325 | Module354 | AT1G59610 | DL3 | dynamin-like 3 | dynamin-like 3 | ||
GRMZM2G316807 | Module354 | AT3G61670 | AT3G61670 | Protein of unknown function (DUF3133) | |||
GRMZM2G370081 | Module354 | AT1G74160 | TRM4 | TON1 Recruiting Motif 4 | |||
GRMZM2G428035 | Module354 | AT4G21410 | CRK29 | cysteine-rich RLK (RECEPTOR-like protein kinase) 29 | cysteine-rich RLK (RECEPTOR-like protein kinase) 29 |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module354 | 10 | 1 | GO:0071219 | biological_process | cellular response to molecule of bacterial origin | 0.000890274 | 1 | 3 |
Module354 | 10 | 2 | GO:0070301 | biological_process | cellular response to hydrogen peroxide | 0.000890274 | 1 | 3 |
Module354 | 10 | 3 | GO:0010105 | biological_process | negative regulation of ethylene-activated signaling pathway | 0.001186899 | 1 | 4 |
Module354 | 10 | 4 | GO:0070298 | biological_process | negative regulation of phosphorelay signal transduction system | 0.001186899 | 1 | 4 |
Module354 | 10 | 5 | GO:0090333 | biological_process | regulation of stomatal closure | 0.001779953 | 1 | 6 |
Module354 | 10 | 6 | GO:0071216 | biological_process | cellular response to biotic stimulus | 0.001779953 | 1 | 6 |
Module354 | 10 | 7 | GO:1902532 | biological_process | negative regulation of intracellular signal transduction | 0.001779953 | 1 | 6 |
Module354 | 10 | 8 | GO:0010104 | biological_process | regulation of ethylene-activated signaling pathway | 0.00207638 | 1 | 7 |
Module354 | 10 | 9 | GO:0070297 | biological_process | regulation of phosphorelay signal transduction system | 0.00207638 | 1 | 7 |
Module354 | 10 | 10 | GO:0071732 | biological_process | cellular response to nitric oxide | 0.002372742 | 1 | 8 |
Module354 | 10 | 11 | GO:0071731 | biological_process | response to nitric oxide | 0.002965267 | 1 | 10 |
Module354 | 10 | 12 | GO:1902170 | biological_process | cellular response to reactive nitrogen species | 0.002965267 | 1 | 10 |
Module354 | 10 | 13 | GO:0002237 | biological_process | response to molecule of bacterial origin | 0.00385356 | 1 | 13 |
Module354 | 10 | 14 | GO:0090332 | biological_process | stomatal closure | 0.004149526 | 1 | 14 |
Module354 | 10 | 15 | GO:0005773 | cellular_component | vacuole | 0.006298814 | 2 | 838 |
Module354 | 10 | 16 | GO:0034614 | biological_process | cellular response to reactive oxygen species | 0.006514878 | 1 | 22 |
Module354 | 10 | 17 | GO:0009873 | biological_process | ethylene-activated signaling pathway | 0.006514878 | 1 | 22 |
Module354 | 10 | 18 | GO:0032550 | molecular_function | purine ribonucleoside binding | 0.006652095 | 4 | 2544 |
Module354 | 10 | 19 | GO:0032555 | molecular_function | purine ribonucleotide binding | 0.006652095 | 4 | 2544 |
Module354 | 10 | 20 | GO:0001883 | molecular_function | purine nucleoside binding | 0.006652095 | 4 | 2544 |
Module354 | 10 | 21 | GO:0032549 | molecular_function | ribonucleoside binding | 0.00672045 | 4 | 2551 |
Module354 | 10 | 22 | GO:0017076 | molecular_function | purine nucleotide binding | 0.006730255 | 4 | 2552 |
Module354 | 10 | 23 | GO:0001882 | molecular_function | nucleoside binding | 0.006730255 | 4 | 2552 |
Module354 | 10 | 24 | GO:0032553 | molecular_function | ribonucleotide binding | 0.007039272 | 4 | 2583 |
Module354 | 10 | 25 | GO:0097367 | molecular_function | carbohydrate derivative binding | 0.007306074 | 4 | 2609 |
Module354 | 10 | 26 | GO:0071241 | biological_process | cellular response to inorganic substance | 0.007400797 | 1 | 25 |
Module354 | 10 | 27 | GO:0004673 | molecular_function | protein histidine kinase activity | 0.007657676 | 1 | 21 |
Module354 | 10 | 28 | GO:0016775 | molecular_function | phosphotransferase activity, nitrogenous group as acceptor | 0.007657676 | 1 | 21 |
Module354 | 10 | 29 | GO:0000155 | molecular_function | phosphorelay sensor kinase activity | 0.007657676 | 1 | 21 |
Module354 | 10 | 30 | GO:1902531 | biological_process | regulation of intracellular signal transduction | 0.007695972 | 1 | 26 |
Module354 | 10 | 31 | GO:0009788 | biological_process | negative regulation of abscisic acid-activated signaling pathway | 0.007991081 | 1 | 27 |
Module354 | 10 | 32 | GO:1901420 | biological_process | negative regulation of response to alcohol | 0.007991081 | 1 | 27 |
Module354 | 10 | 33 | GO:0034599 | biological_process | cellular response to oxidative stress | 0.008876013 | 1 | 30 |
Module354 | 10 | 34 | GO:0071369 | biological_process | cellular response to ethylene stimulus | 0.009170859 | 1 | 31 |
Module354 | 10 | 35 | GO:0009968 | biological_process | negative regulation of signal transduction | 0.010644101 | 1 | 36 |
Module354 | 10 | 36 | GO:0010648 | biological_process | negative regulation of cell communication | 0.010938552 | 1 | 37 |
Module354 | 10 | 37 | GO:0023057 | biological_process | negative regulation of signaling | 0.010938552 | 1 | 37 |
Module354 | 10 | 38 | GO:0043168 | molecular_function | anion binding | 0.012213215 | 4 | 2999 |
Module354 | 10 | 39 | GO:1901699 | biological_process | cellular response to nitrogen compound | 0.012409822 | 1 | 42 |
Module354 | 10 | 40 | GO:0009787 | biological_process | regulation of abscisic acid-activated signaling pathway | 0.013291796 | 1 | 45 |
Module354 | 10 | 41 | GO:1901419 | biological_process | regulation of response to alcohol | 0.013291796 | 1 | 45 |
Module354 | 10 | 42 | GO:0023014 | biological_process | signal transduction by protein phosphorylation | 0.013585656 | 1 | 46 |
Module354 | 10 | 43 | GO:0000156 | molecular_function | phosphorelay response regulator activity | 0.017070845 | 1 | 47 |
Module354 | 10 | 44 | GO:0010119 | biological_process | regulation of stomatal movement | 0.017106858 | 1 | 58 |
Module354 | 10 | 45 | GO:0042542 | biological_process | response to hydrogen peroxide | 0.017399865 | 1 | 59 |
Module354 | 10 | 46 | GO:0004650 | molecular_function | polygalacturonase activity | 0.017791842 | 1 | 49 |
Module354 | 10 | 47 | GO:1901265 | molecular_function | nucleoside phosphate binding | 0.018648122 | 4 | 3369 |
Module354 | 10 | 48 | GO:0000166 | molecular_function | nucleotide binding | 0.018648122 | 4 | 3369 |
Module354 | 10 | 49 | GO:0038023 | molecular_function | signaling receptor activity | 0.019232514 | 1 | 53 |
Module354 | 10 | 50 | GO:0048585 | biological_process | negative regulation of response to stimulus | 0.020326337 | 1 | 69 |
Module354 | 10 | 51 | GO:0036094 | molecular_function | small molecule binding | 0.020337799 | 4 | 3451 |
Module354 | 10 | 52 | GO:0009738 | biological_process | abscisic acid-activated signaling pathway | 0.022370974 | 1 | 76 |
Module354 | 10 | 53 | GO:0060089 | molecular_function | molecular transducer activity | 0.022826491 | 1 | 63 |
Module354 | 10 | 54 | GO:0004872 | molecular_function | receptor activity | 0.022826491 | 1 | 63 |
Module354 | 10 | 55 | GO:0000160 | biological_process | phosphorelay signal transduction system | 0.023829469 | 1 | 81 |
Module354 | 10 | 56 | GO:0043167 | molecular_function | ion binding | 0.023867731 | 5 | 5827 |
Module354 | 10 | 57 | GO:0043531 | molecular_function | ADP binding | 0.025693765 | 1 | 71 |
Module354 | 10 | 58 | GO:0071215 | biological_process | cellular response to abscisic acid stimulus | 0.026159665 | 1 | 89 |
Module354 | 10 | 59 | GO:0010118 | biological_process | stomatal movement | 0.027904572 | 1 | 95 |
Module354 | 10 | 60 | GO:0005057 | molecular_function | receptor signaling protein activity | 0.03033813 | 1 | 84 |
Module354 | 10 | 61 | GO:0009966 | biological_process | regulation of signal transduction | 0.03167716 | 1 | 108 |
Module354 | 10 | 62 | GO:0023051 | biological_process | regulation of signaling | 0.032256582 | 1 | 110 |
Module354 | 10 | 63 | GO:0010646 | biological_process | regulation of cell communication | 0.033125227 | 1 | 113 |
Module354 | 10 | 64 | GO:0009723 | biological_process | response to ethylene | 0.033125227 | 1 | 113 |
Module354 | 10 | 65 | GO:0097306 | biological_process | cellular response to alcohol | 0.035149792 | 1 | 120 |
Module354 | 10 | 66 | GO:0000302 | biological_process | response to reactive oxygen species | 0.036882602 | 1 | 126 |
Module354 | 10 | 67 | GO:1901698 | biological_process | response to nitrogen compound | 0.037748131 | 1 | 129 |
Module354 | 10 | 68 | GO:0032559 | molecular_function | adenyl ribonucleotide binding | 0.038763474 | 3 | 2282 |
Module354 | 10 | 69 | GO:0071396 | biological_process | cellular response to lipid | 0.038901262 | 1 | 133 |
Module354 | 10 | 70 | GO:0030554 | molecular_function | adenyl nucleotide binding | 0.038944311 | 3 | 2286 |
Module354 | 10 | 71 | GO:0006468 | biological_process | protein phosphorylation | 0.041436485 | 2 | 1190 |
Module354 | 10 | 72 | GO:0009505 | cellular_component | plant-type cell wall | 0.041447204 | 1 | 221 |
Module354 | 10 | 73 | GO:0003924 | molecular_function | GTPase activity | 0.046272575 | 1 | 129 |
Module354 | 10 | 74 | GO:0035639 | molecular_function | purine ribonucleoside triphosphate binding | 0.048190787 | 3 | 2478 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
hk5 | rp3 | 0.0429 |
hk5 | GRMZM2G316807 | 0.0366 |
hk5 | GRMZM2G428035 | 0.0395 |
GRMZM2G043489 | AC231180.2_FG001 | 0.0418 |
GRMZM2G043489 | GRMZM2G370081 | 0.0492 |
AC231180.2_FG001 | GRMZM2G113815 | 0.0419 |
AC231180.2_FG001 | GRMZM2G137211 | 0.0415 |
AC231180.2_FG001 | GRMZM2G316807 | 0.0833 |
GRMZM2G163325 | GRMZM2G316807 | 0.0405 |