This page contains information for Module368, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
GRMZM2G064818 | Module368 | AT5G50335 | AT5G50335 | ||||
GRMZM2G128421 | iaa22 | Module368 | AT1G04240 | SHY2 | SHORT HYPOCOTYL 2 | AUX/IAA transcriptional regulator family protein | AUX/IAA |
GRMZM2G079957 | iaa2 | Module368 | AT1G04240 | SHY2 | SHORT HYPOCOTYL 2 | AUX/IAA transcriptional regulator family protein | AUX/IAA |
GRMZM2G098643 | pin1 | Module368 | AT1G73590 | PIN1 | PIN-FORMED 1 | Auxin efflux carrier family protein | |
GRMZM2G138419 | Module368 | AT5G53480 | AT5G53480 | ARM repeat superfamily protein | |||
GRMZM2G145654 | Module368 | AT1G76600 | AT1G76600 | ||||
GRMZM2G159285 | iaa4 | Module368 | AT3G23050 | IAA7 | indole-3-acetic acid 7 | indole-3-acetic acid 7 | AUX/IAA |
GRMZM2G077356 | iaa21 | Module368 | AT3G04730 | IAA16 | indoleacetic acid-induced protein 16 | indoleacetic acid-induced protein 16 | AUX/IAA |
GRMZM2G366373 | iaa3 | Module368 | AT1G04240 | SHY2 | SHORT HYPOCOTYL 2 | AUX/IAA transcriptional regulator family protein | AUX/IAA |
GRMZM2G367650 | Module368 | AT3G61460 | BRH1 | brassinosteroid-responsive RING-H2 | brassinosteroid-responsive RING-H2 |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module368 | 10 | 1 | GO:0009734 | biological_process | auxin-activated signaling pathway | 2.62E-12 | 6 | 117 |
Module368 | 10 | 2 | GO:0071365 | biological_process | cellular response to auxin stimulus | 3.38E-12 | 6 | 122 |
Module368 | 10 | 3 | GO:0009733 | biological_process | response to auxin | 1.56E-10 | 6 | 229 |
Module368 | 10 | 4 | GO:0009755 | biological_process | hormone-mediated signaling pathway | 6.49E-10 | 6 | 290 |
Module368 | 10 | 5 | GO:0032870 | biological_process | cellular response to hormone stimulus | 1.09E-09 | 6 | 316 |
Module368 | 10 | 6 | GO:0071495 | biological_process | cellular response to endogenous stimulus | 1.20E-09 | 6 | 321 |
Module368 | 10 | 7 | GO:0071310 | biological_process | cellular response to organic substance | 3.47E-09 | 6 | 383 |
Module368 | 10 | 8 | GO:0070887 | biological_process | cellular response to chemical stimulus | 9.13E-09 | 6 | 450 |
Module368 | 10 | 9 | GO:0034248 | biological_process | regulation of cellular amide metabolic process | 3.98E-08 | 4 | 80 |
Module368 | 10 | 10 | GO:0006417 | biological_process | regulation of translation | 3.98E-08 | 4 | 80 |
Module368 | 10 | 11 | GO:0007165 | biological_process | signal transduction | 1.26E-07 | 6 | 697 |
Module368 | 10 | 12 | GO:0023052 | biological_process | signaling | 1.36E-07 | 6 | 706 |
Module368 | 10 | 13 | GO:0044700 | biological_process | single organism signaling | 1.36E-07 | 6 | 706 |
Module368 | 10 | 14 | GO:0010608 | biological_process | posttranscriptional regulation of gene expression | 1.55E-07 | 4 | 112 |
Module368 | 10 | 15 | GO:0009725 | biological_process | response to hormone | 2.65E-07 | 6 | 790 |
Module368 | 10 | 16 | GO:0009719 | biological_process | response to endogenous stimulus | 3.53E-07 | 6 | 829 |
Module368 | 10 | 17 | GO:0007154 | biological_process | cell communication | 4.49E-07 | 6 | 863 |
Module368 | 10 | 18 | GO:0032268 | biological_process | regulation of cellular protein metabolic process | 8.31E-07 | 4 | 170 |
Module368 | 10 | 19 | GO:0010033 | biological_process | response to organic substance | 8.52E-07 | 6 | 961 |
Module368 | 10 | 20 | GO:0051246 | biological_process | regulation of protein metabolic process | 1.07E-06 | 4 | 181 |
Module368 | 10 | 21 | GO:0009630 | biological_process | gravitropism | 1.57E-06 | 3 | 49 |
Module368 | 10 | 22 | GO:0046983 | molecular_function | protein dimerization activity | 1.92E-06 | 5 | 538 |
Module368 | 10 | 23 | GO:0009629 | biological_process | response to gravity | 2.23E-06 | 3 | 55 |
Module368 | 10 | 24 | GO:0051716 | biological_process | cellular response to stimulus | 2.46E-06 | 6 | 1149 |
Module368 | 10 | 25 | GO:0009606 | biological_process | tropism | 2.62E-06 | 3 | 58 |
Module368 | 10 | 26 | GO:0042221 | biological_process | response to chemical | 2.34E-05 | 6 | 1681 |
Module368 | 10 | 27 | GO:0010101 | biological_process | post-embryonic root morphogenesis | 0.000106781 | 2 | 31 |
Module368 | 10 | 28 | GO:0010102 | biological_process | lateral root morphogenesis | 0.000106781 | 2 | 31 |
Module368 | 10 | 29 | GO:2001141 | biological_process | regulation of RNA biosynthetic process | 0.000143661 | 5 | 1293 |
Module368 | 10 | 30 | GO:0006355 | biological_process | regulation of transcription, DNA-templated | 0.000143661 | 5 | 1293 |
Module368 | 10 | 31 | GO:1903506 | biological_process | regulation of nucleic acid-templated transcription | 0.000143661 | 5 | 1293 |
Module368 | 10 | 32 | GO:0051252 | biological_process | regulation of RNA metabolic process | 0.000149665 | 5 | 1304 |
Module368 | 10 | 33 | GO:0019219 | biological_process | regulation of nucleobase-containing compound metabolic process | 0.000166443 | 5 | 1333 |
Module368 | 10 | 34 | GO:0050794 | biological_process | regulation of cellular process | 0.000179835 | 6 | 2381 |
Module368 | 10 | 35 | GO:0010556 | biological_process | regulation of macromolecule biosynthetic process | 0.000192641 | 5 | 1374 |
Module368 | 10 | 36 | GO:2000112 | biological_process | regulation of cellular macromolecule biosynthetic process | 0.000192641 | 5 | 1374 |
Module368 | 10 | 37 | GO:0031326 | biological_process | regulation of cellular biosynthetic process | 0.000215986 | 5 | 1407 |
Module368 | 10 | 38 | GO:0051171 | biological_process | regulation of nitrogen compound metabolic process | 0.000217469 | 5 | 1409 |
Module368 | 10 | 39 | GO:0010468 | biological_process | regulation of gene expression | 0.000221211 | 5 | 1414 |
Module368 | 10 | 40 | GO:0097659 | biological_process | nucleic acid-templated transcription | 0.000221211 | 5 | 1414 |
Module368 | 10 | 41 | GO:0006351 | biological_process | transcription, DNA-templated | 0.000221211 | 5 | 1414 |
Module368 | 10 | 42 | GO:0032774 | biological_process | RNA biosynthetic process | 0.000225003 | 5 | 1419 |
Module368 | 10 | 43 | GO:0009889 | biological_process | regulation of biosynthetic process | 0.000227303 | 5 | 1422 |
Module368 | 10 | 44 | GO:0080090 | biological_process | regulation of primary metabolic process | 0.00032013 | 5 | 1527 |
Module368 | 10 | 45 | GO:0060255 | biological_process | regulation of macromolecule metabolic process | 0.000325191 | 5 | 1532 |
Module368 | 10 | 46 | GO:0006412 | biological_process | translation | 0.000340296 | 4 | 781 |
Module368 | 10 | 47 | GO:0031323 | biological_process | regulation of cellular metabolic process | 0.000348207 | 5 | 1554 |
Module368 | 10 | 48 | GO:0043043 | biological_process | peptide biosynthetic process | 0.000353956 | 4 | 789 |
Module368 | 10 | 49 | GO:0006518 | biological_process | peptide metabolic process | 0.000395457 | 4 | 812 |
Module368 | 10 | 50 | GO:0034654 | biological_process | nucleobase-containing compound biosynthetic process | 0.00039924 | 5 | 1599 |
Module368 | 10 | 51 | GO:0043604 | biological_process | amide biosynthetic process | 0.000414564 | 4 | 822 |
Module368 | 10 | 52 | GO:0050789 | biological_process | regulation of biological process | 0.000416308 | 6 | 2751 |
Module368 | 10 | 53 | GO:0048527 | biological_process | lateral root development | 0.000417125 | 2 | 61 |
Module368 | 10 | 54 | GO:0043603 | biological_process | cellular amide metabolic process | 0.000508977 | 4 | 867 |
Module368 | 10 | 55 | GO:0065007 | biological_process | biological regulation | 0.000594784 | 6 | 2926 |
Module368 | 10 | 56 | GO:0019222 | biological_process | regulation of metabolic process | 0.000632942 | 5 | 1761 |
Module368 | 10 | 57 | GO:0048528 | biological_process | post-embryonic root development | 0.000647211 | 2 | 76 |
Module368 | 10 | 58 | GO:0018130 | biological_process | heterocycle biosynthetic process | 0.000709942 | 5 | 1804 |
Module368 | 10 | 59 | GO:0019438 | biological_process | aromatic compound biosynthetic process | 0.000734596 | 5 | 1817 |
Module368 | 10 | 60 | GO:0016070 | biological_process | RNA metabolic process | 0.000808421 | 5 | 1854 |
Module368 | 10 | 61 | GO:0005634 | cellular_component | nucleus | 0.000820191 | 6 | 2423 |
Module368 | 10 | 62 | GO:1901362 | biological_process | organic cyclic compound biosynthetic process | 0.000963741 | 5 | 1924 |
Module368 | 10 | 63 | GO:0009886 | biological_process | post-embryonic morphogenesis | 0.001009198 | 2 | 95 |
Module368 | 10 | 64 | GO:0048569 | biological_process | post-embryonic organ development | 0.001254398 | 2 | 106 |
Module368 | 10 | 65 | GO:0050896 | biological_process | response to stimulus | 0.001743154 | 6 | 3528 |
Module368 | 10 | 66 | GO:0090304 | biological_process | nucleic acid metabolic process | 0.001755809 | 5 | 2185 |
Module368 | 10 | 67 | GO:0009753 | biological_process | response to jasmonic acid | 0.001850382 | 2 | 129 |
Module368 | 10 | 68 | GO:0010015 | biological_process | root morphogenesis | 0.002299022 | 2 | 144 |
Module368 | 10 | 69 | GO:1901566 | biological_process | organonitrogen compound biosynthetic process | 0.002480412 | 4 | 1315 |
Module368 | 10 | 70 | GO:0009611 | biological_process | response to wounding | 0.002691577 | 2 | 156 |
Module368 | 10 | 71 | GO:0034645 | biological_process | cellular macromolecule biosynthetic process | 0.003335252 | 5 | 2507 |
Module368 | 10 | 72 | GO:0010467 | biological_process | gene expression | 0.003366221 | 5 | 2512 |
Module368 | 10 | 73 | GO:0044271 | biological_process | cellular nitrogen compound biosynthetic process | 0.003454105 | 5 | 2526 |
Module368 | 10 | 74 | GO:0009059 | biological_process | macromolecule biosynthetic process | 0.003466801 | 5 | 2528 |
Module368 | 10 | 75 | GO:0005515 | molecular_function | protein binding | 0.003634583 | 6 | 3991 |
Module368 | 10 | 76 | GO:0006139 | biological_process | nucleobase-containing compound metabolic process | 0.003927106 | 5 | 2597 |
Module368 | 10 | 77 | GO:0009925 | cellular_component | basal plasma membrane | 0.003974257 | 1 | 6 |
Module368 | 10 | 78 | GO:0016323 | cellular_component | basolateral plasma membrane | 0.003974257 | 1 | 6 |
Module368 | 10 | 79 | GO:0045178 | cellular_component | basal part of cell | 0.003974257 | 1 | 6 |
Module368 | 10 | 80 | GO:0010329 | molecular_function | auxin efflux transmembrane transporter activity | 0.004381687 | 1 | 9 |
Module368 | 10 | 81 | GO:0048513 | biological_process | animal organ development | 0.005903123 | 2 | 233 |
Module368 | 10 | 82 | GO:0000323 | cellular_component | lytic vacuole | 0.005956303 | 1 | 9 |
Module368 | 10 | 83 | GO:0046483 | biological_process | heterocycle metabolic process | 0.006179944 | 5 | 2866 |
Module368 | 10 | 84 | GO:0010315 | biological_process | auxin efflux | 0.006218057 | 1 | 12 |
Module368 | 10 | 85 | GO:0080161 | molecular_function | auxin transmembrane transporter activity | 0.006323705 | 1 | 13 |
Module368 | 10 | 86 | GO:0009605 | biological_process | response to external stimulus | 0.00639565 | 3 | 814 |
Module368 | 10 | 87 | GO:0009414 | biological_process | response to water deprivation | 0.006405881 | 2 | 243 |
Module368 | 10 | 88 | GO:0006725 | biological_process | cellular aromatic compound metabolic process | 0.006615365 | 5 | 2909 |
Module368 | 10 | 89 | GO:0015562 | molecular_function | efflux transmembrane transporter activity | 0.006808692 | 1 | 14 |
Module368 | 10 | 90 | GO:0009415 | biological_process | response to water | 0.006874777 | 2 | 252 |
Module368 | 10 | 91 | GO:1901564 | biological_process | organonitrogen compound metabolic process | 0.007601282 | 4 | 1779 |
Module368 | 10 | 92 | GO:1901360 | biological_process | organic cyclic compound metabolic process | 0.007601395 | 5 | 2999 |
Module368 | 10 | 93 | GO:0010928 | biological_process | regulation of auxin mediated signaling pathway | 0.007767383 | 1 | 15 |
Module368 | 10 | 94 | GO:0022622 | biological_process | root system development | 0.008373626 | 2 | 279 |
Module368 | 10 | 95 | GO:0048364 | biological_process | root development | 0.008373626 | 2 | 279 |
Module368 | 10 | 96 | GO:0044763 | biological_process | single-organism cellular process | 0.010382349 | 6 | 4840 |
Module368 | 10 | 97 | GO:0009958 | biological_process | positive gravitropism | 0.010859824 | 1 | 21 |
Module368 | 10 | 98 | GO:0098590 | cellular_component | plasma membrane region | 0.01122524 | 1 | 17 |
Module368 | 10 | 99 | GO:0098589 | cellular_component | membrane region | 0.015815905 | 1 | 24 |
Module368 | 10 | 100 | GO:0034641 | biological_process | cellular nitrogen compound metabolic process | 0.016138891 | 5 | 3545 |
Module368 | 10 | 101 | GO:0044249 | biological_process | cellular biosynthetic process | 0.016159146 | 5 | 3546 |
Module368 | 10 | 102 | GO:1901576 | biological_process | organic substance biosynthetic process | 0.017409187 | 5 | 3606 |
Module368 | 10 | 103 | GO:0051169 | biological_process | nuclear transport | 0.020087632 | 1 | 39 |
Module368 | 10 | 104 | GO:0006913 | biological_process | nucleocytoplasmic transport | 0.020087632 | 1 | 39 |
Module368 | 10 | 105 | GO:0009058 | biological_process | biosynthetic process | 0.020943169 | 5 | 3760 |
Module368 | 10 | 106 | GO:0009416 | biological_process | response to light stimulus | 0.022056701 | 2 | 463 |
Module368 | 10 | 107 | GO:0005643 | cellular_component | nuclear pore | 0.022342302 | 1 | 34 |
Module368 | 10 | 108 | GO:0060918 | biological_process | auxin transport | 0.023147124 | 1 | 45 |
Module368 | 10 | 109 | GO:0043231 | cellular_component | intracellular membrane-bounded organelle | 0.023189134 | 7 | 6165 |
Module368 | 10 | 110 | GO:0043227 | cellular_component | membrane-bounded organelle | 0.02321549 | 7 | 6166 |
Module368 | 10 | 111 | GO:0009314 | biological_process | response to radiation | 0.023330376 | 2 | 477 |
Module368 | 10 | 112 | GO:0009914 | biological_process | hormone transport | 0.023656243 | 1 | 46 |
Module368 | 10 | 113 | GO:0006807 | biological_process | nitrogen compound metabolic process | 0.024231589 | 5 | 3887 |
Module368 | 10 | 114 | GO:0099402 | biological_process | plant organ development | 0.027631971 | 2 | 522 |
Module368 | 10 | 115 | GO:0009653 | biological_process | anatomical structure morphogenesis | 0.028932387 | 2 | 535 |
Module368 | 10 | 116 | GO:0008565 | molecular_function | protein transporter activity | 0.029370709 | 1 | 61 |
Module368 | 10 | 117 | GO:0009628 | biological_process | response to abiotic stimulus | 0.029899209 | 3 | 1427 |
Module368 | 10 | 118 | GO:0044267 | biological_process | cellular protein metabolic process | 0.037178013 | 4 | 2783 |
Module368 | 10 | 119 | GO:0043229 | cellular_component | intracellular organelle | 0.039953268 | 7 | 6663 |
Module368 | 10 | 120 | GO:0043226 | cellular_component | organelle | 0.040037329 | 7 | 6665 |
Module368 | 10 | 121 | GO:0022892 | molecular_function | substrate-specific transporter activity | 0.042685668 | 2 | 698 |
Module368 | 10 | 122 | GO:0001101 | biological_process | response to acid chemical | 0.048288098 | 2 | 706 |
Module368 | 10 | 123 | GO:0005635 | cellular_component | nuclear envelope | 0.049984904 | 1 | 77 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
GRMZM2G064818 | GRMZM2G145654 | 0.0375 |
GRMZM2G064818 | GRMZM2G367650 | 0.0356 |
iaa22 | iaa2 | 0.0493 |
iaa22 | pin1 | 0.0392 |
iaa22 | iaa4 | 0.0363 |
iaa22 | iaa3 | 0.0803 |
iaa22 | GRMZM2G367650 | 0.0387 |
iaa2 | GRMZM2G138419 | 0.0397 |
iaa4 | iaa21 | 0.0439 |