This page contains information for Module403, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
GRMZM2G030350 | Module403 | AT2G38820 | AT2G38820 | Protein of unknown function (DUF506) | |||
GRMZM2G080034 | Module403 | AT3G22970 | AT3G22970 | Protein of unknown function (DUF506) | |||
GRMZM2G093291 | Module403 | AT5G27270 | EMB976 | EMBRYO DEFECTIVE 976 | Tetratricopeptide repeat (TPR)-like superfamily protein | ||
GRMZM2G076602 | ereb212 | Module403 | AT4G36920 | AP2 | APETALA 2 | Integrase-type DNA-binding superfamily protein | AP2-EREBP |
GRMZM2G144982 | Module403 | AT3G53470 | AT3G53470 | ||||
GRMZM2G023059 | Module403 | AT3G53470 | AT3G53470 | ||||
GRMZM2G174145 | Module403 | AT1G77670 | AT1G77670 | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | |||
GRMZM2G174784 | ereb197 | Module403 | AT4G36920 | AP2 | APETALA 2 | Integrase-type DNA-binding superfamily protein | AP2-EREBP |
GRMZM2G178603 | tcptf16 | Module403 | AT5G08330 | TCP11 | TCP domain protein 11 | TCP family transcription factor | TCP |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module403 | 9 | 1 | GO:0010093 | biological_process | specification of floral organ identity | 3.01E-06 | 2 | 14 |
Module403 | 9 | 2 | GO:0048449 | biological_process | floral organ formation | 8.35E-06 | 2 | 23 |
Module403 | 9 | 3 | GO:0048444 | biological_process | floral organ morphogenesis | 1.44E-05 | 2 | 30 |
Module403 | 9 | 4 | GO:0048563 | biological_process | post-embryonic organ morphogenesis | 1.44E-05 | 2 | 30 |
Module403 | 9 | 5 | GO:0010073 | biological_process | meristem maintenance | 7.06E-05 | 2 | 66 |
Module403 | 9 | 6 | GO:0009886 | biological_process | post-embryonic morphogenesis | 0.000146852 | 2 | 95 |
Module403 | 9 | 7 | GO:0048569 | biological_process | post-embryonic organ development | 0.00018293 | 2 | 106 |
Module403 | 9 | 8 | GO:0009887 | biological_process | organ morphogenesis | 0.000200631 | 2 | 111 |
Module403 | 9 | 9 | GO:0048646 | biological_process | anatomical structure formation involved in morphogenesis | 0.000204269 | 2 | 112 |
Module403 | 9 | 10 | GO:0003002 | biological_process | regionalization | 0.000207939 | 2 | 113 |
Module403 | 9 | 11 | GO:0007389 | biological_process | pattern specification process | 0.000271078 | 2 | 129 |
Module403 | 9 | 12 | GO:0048437 | biological_process | floral organ development | 0.000275299 | 2 | 130 |
Module403 | 9 | 13 | GO:0048507 | biological_process | meristem development | 0.000310241 | 2 | 138 |
Module403 | 9 | 14 | GO:0048513 | biological_process | animal organ development | 0.000882842 | 2 | 233 |
Module403 | 9 | 15 | GO:0048316 | biological_process | seed development | 0.001300129 | 2 | 283 |
Module403 | 9 | 16 | GO:0009908 | biological_process | flower development | 0.001412078 | 2 | 295 |
Module403 | 9 | 17 | GO:0010154 | biological_process | fruit development | 0.001479484 | 2 | 302 |
Module403 | 9 | 18 | GO:0090567 | biological_process | reproductive shoot system development | 0.001538491 | 2 | 308 |
Module403 | 9 | 19 | GO:0009888 | biological_process | tissue development | 0.001894279 | 2 | 342 |
Module403 | 9 | 20 | GO:0048367 | biological_process | shoot system development | 0.003862972 | 2 | 490 |
Module403 | 9 | 21 | GO:0099402 | biological_process | plant organ development | 0.004377435 | 2 | 522 |
Module403 | 9 | 22 | GO:0009653 | biological_process | anatomical structure morphogenesis | 0.004595361 | 2 | 535 |
Module403 | 9 | 23 | GO:0003700 | molecular_function | transcription factor activity, sequence-specific DNA binding | 0.005049667 | 2 | 683 |
Module403 | 9 | 24 | GO:0001071 | molecular_function | nucleic acid binding transcription factor activity | 0.005064263 | 2 | 684 |
Module403 | 9 | 25 | GO:0061458 | biological_process | reproductive system development | 0.006185606 | 2 | 622 |
Module403 | 9 | 26 | GO:0048608 | biological_process | reproductive structure development | 0.006185606 | 2 | 622 |
Module403 | 9 | 27 | GO:0003006 | biological_process | developmental process involved in reproduction | 0.008937098 | 2 | 750 |
Module403 | 9 | 28 | GO:0048481 | biological_process | plant ovule development | 0.009321535 | 1 | 42 |
Module403 | 9 | 29 | GO:0035670 | biological_process | plant-type ovary development | 0.009321535 | 1 | 42 |
Module403 | 9 | 30 | GO:0044702 | biological_process | single organism reproductive process | 0.009506881 | 2 | 774 |
Module403 | 9 | 31 | GO:0009791 | biological_process | post-embryonic development | 0.010443466 | 2 | 812 |
Module403 | 9 | 32 | GO:0048440 | biological_process | carpel development | 0.011753279 | 1 | 53 |
Module403 | 9 | 33 | GO:0022414 | biological_process | reproductive process | 0.013248777 | 2 | 917 |
Module403 | 9 | 34 | GO:0000003 | biological_process | reproduction | 0.013390259 | 2 | 922 |
Module403 | 9 | 35 | GO:0048467 | biological_process | gynoecium development | 0.013739926 | 1 | 62 |
Module403 | 9 | 36 | GO:0048731 | biological_process | system development | 0.014166569 | 2 | 949 |
Module403 | 9 | 37 | GO:0030170 | molecular_function | pyridoxal phosphate binding | 0.021426538 | 1 | 118 |
Module403 | 9 | 38 | GO:0009058 | biological_process | biosynthetic process | 0.021708541 | 3 | 3760 |
Module403 | 9 | 39 | GO:0048438 | biological_process | floral whorl development | 0.024947319 | 1 | 113 |
Module403 | 9 | 40 | GO:2001141 | biological_process | regulation of RNA biosynthetic process | 0.025836034 | 2 | 1293 |
Module403 | 9 | 41 | GO:0006355 | biological_process | regulation of transcription, DNA-templated | 0.025836034 | 2 | 1293 |
Module403 | 9 | 42 | GO:1903506 | biological_process | regulation of nucleic acid-templated transcription | 0.025836034 | 2 | 1293 |
Module403 | 9 | 43 | GO:0051252 | biological_process | regulation of RNA metabolic process | 0.02626239 | 2 | 1304 |
Module403 | 9 | 44 | GO:0019219 | biological_process | regulation of nucleobase-containing compound metabolic process | 0.02740186 | 2 | 1333 |
Module403 | 9 | 45 | GO:0007275 | biological_process | multicellular organism development | 0.027959935 | 2 | 1347 |
Module403 | 9 | 46 | GO:0010556 | biological_process | regulation of macromolecule biosynthetic process | 0.029050847 | 2 | 1374 |
Module403 | 9 | 47 | GO:2000112 | biological_process | regulation of cellular macromolecule biosynthetic process | 0.029050847 | 2 | 1374 |
Module403 | 9 | 48 | GO:0044707 | biological_process | single-multicellular organism process | 0.029830027 | 2 | 1393 |
Module403 | 9 | 49 | GO:0048856 | biological_process | anatomical structure development | 0.030368605 | 2 | 1406 |
Module403 | 9 | 50 | GO:0031326 | biological_process | regulation of cellular biosynthetic process | 0.030410218 | 2 | 1407 |
Module403 | 9 | 51 | GO:0051171 | biological_process | regulation of nitrogen compound metabolic process | 0.030493521 | 2 | 1409 |
Module403 | 9 | 52 | GO:0010468 | biological_process | regulation of gene expression | 0.030702235 | 2 | 1414 |
Module403 | 9 | 53 | GO:0097659 | biological_process | nucleic acid-templated transcription | 0.030702235 | 2 | 1414 |
Module403 | 9 | 54 | GO:0006351 | biological_process | transcription, DNA-templated | 0.030702235 | 2 | 1414 |
Module403 | 9 | 55 | GO:0032774 | biological_process | RNA biosynthetic process | 0.030911603 | 2 | 1419 |
Module403 | 9 | 56 | GO:0009889 | biological_process | regulation of biosynthetic process | 0.031037537 | 2 | 1422 |
Module403 | 9 | 57 | GO:0032501 | biological_process | multicellular organismal process | 0.033998506 | 2 | 1491 |
Module403 | 9 | 58 | GO:0080090 | biological_process | regulation of primary metabolic process | 0.035592098 | 2 | 1527 |
Module403 | 9 | 59 | GO:0060255 | biological_process | regulation of macromolecule metabolic process | 0.035816055 | 2 | 1532 |
Module403 | 9 | 60 | GO:0044767 | biological_process | single-organism developmental process | 0.036085646 | 2 | 1538 |
Module403 | 9 | 61 | GO:0003677 | molecular_function | DNA binding | 0.036788078 | 2 | 1891 |
Module403 | 9 | 62 | GO:0031323 | biological_process | regulation of cellular metabolic process | 0.036809042 | 2 | 1554 |
Module403 | 9 | 63 | GO:0032502 | biological_process | developmental process | 0.038136772 | 2 | 1583 |
Module403 | 9 | 64 | GO:0034654 | biological_process | nucleobase-containing compound biosynthetic process | 0.038878422 | 2 | 1599 |
Module403 | 9 | 65 | GO:0019222 | biological_process | regulation of metabolic process | 0.046747581 | 2 | 1761 |
Module403 | 9 | 66 | GO:0018130 | biological_process | heterocycle biosynthetic process | 0.048944752 | 2 | 1804 |
Module403 | 9 | 67 | GO:0019438 | biological_process | aromatic compound biosynthetic process | 0.049617839 | 2 | 1817 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
GRMZM2G030350 | GRMZM2G080034 | 0.038 |
GRMZM2G030350 | ereb197 | 0.0356 |
GRMZM2G093291 | ereb212 | 0.037 |
GRMZM2G093291 | GRMZM2G174145 | 0.0355 |
ereb212 | GRMZM2G144982 | 0.0444 |
ereb212 | ereb197 | 0.0652 |
ereb212 | tcptf16 | 0.0425 |
GRMZM2G144982 | GRMZM2G023059 | 0.038 |