This page contains information for Module406, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
GRMZM2G039867 | tru1 | Module406 | AT2G41370 | BOP2 | BLADE ON PETIOLE2 | Ankyrin repeat family protein / BTB/POZ domain-containing protein | TRAF |
GRMZM2G047128 | Module406 | AT3G60520 | AT3G60520 | ||||
GRMZM2G060723 | Module406 | AT2G41370 | BOP2 | BLADE ON PETIOLE2 | Ankyrin repeat family protein / BTB/POZ domain-containing protein | TRAF | |
GRMZM2G090226 | Module406 | AT4G08950 | EXO | EXORDIUM | Phosphate-responsive 1 family protein | ||
GRMZM2G126566 | myb159 | Module406 | AT1G66230 | MYB20 | myb domain protein 20 | myb domain protein 20 | MYB |
GRMZM2G359670 | Module406 | ||||||
GRMZM2G426294 | Module406 | AT1G02816 | AT1G02816 | Protein of unknown function, DUF538 | |||
GRMZM2G442791 | ms22 | Module406 | AT5G14070 | ROXY2 | Thioredoxin superfamily protein | ||
GRMZM2G480551 | Module406 | AT3G07350 | AT3G07350 | Protein of unknown function (DUF506) |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module406 | 9 | 1 | GO:0010254 | biological_process | nectary development | 1.98E-07 | 2 | 3 |
Module406 | 9 | 2 | GO:0048439 | biological_process | flower morphogenesis | 1.98E-07 | 2 | 3 |
Module406 | 9 | 3 | GO:0009954 | biological_process | proximal/distal pattern formation | 6.61E-07 | 2 | 5 |
Module406 | 9 | 4 | GO:0009943 | biological_process | adaxial/abaxial axis specification | 4.36E-06 | 2 | 12 |
Module406 | 9 | 5 | GO:0009944 | biological_process | polarity specification of adaxial/abaxial axis | 4.36E-06 | 2 | 12 |
Module406 | 9 | 6 | GO:0010227 | biological_process | floral organ abscission | 5.15E-06 | 2 | 13 |
Module406 | 9 | 7 | GO:0065001 | biological_process | specification of axis polarity | 5.15E-06 | 2 | 13 |
Module406 | 9 | 8 | GO:0010582 | biological_process | floral meristem determinacy | 6.01E-06 | 2 | 14 |
Module406 | 9 | 9 | GO:0009838 | biological_process | abscission | 6.01E-06 | 2 | 14 |
Module406 | 9 | 10 | GO:0010022 | biological_process | meristem determinacy | 6.93E-06 | 2 | 15 |
Module406 | 9 | 11 | GO:0009798 | biological_process | axis specification | 1.25E-05 | 2 | 20 |
Module406 | 9 | 12 | GO:0009955 | biological_process | adaxial/abaxial pattern specification | 1.98E-05 | 2 | 25 |
Module406 | 9 | 13 | GO:0010073 | biological_process | meristem maintenance | 0.000140852 | 2 | 66 |
Module406 | 9 | 14 | GO:0009886 | biological_process | post-embryonic morphogenesis | 0.000292353 | 2 | 95 |
Module406 | 9 | 15 | GO:0003002 | biological_process | regionalization | 0.000413596 | 2 | 113 |
Module406 | 9 | 16 | GO:0010016 | biological_process | shoot system morphogenesis | 0.000420939 | 2 | 114 |
Module406 | 9 | 17 | GO:0007389 | biological_process | pattern specification process | 0.000538751 | 2 | 129 |
Module406 | 9 | 18 | GO:0048437 | biological_process | floral organ development | 0.000547114 | 2 | 130 |
Module406 | 9 | 19 | GO:0048507 | biological_process | meristem development | 0.00061631 | 2 | 138 |
Module406 | 9 | 20 | GO:1903338 | biological_process | regulation of cell wall organization or biogenesis | 0.002372742 | 1 | 8 |
Module406 | 9 | 21 | GO:0009864 | biological_process | induced systemic resistance, jasmonic acid mediated signaling pathway | 0.002372742 | 1 | 8 |
Module406 | 9 | 22 | GO:2000652 | biological_process | regulation of secondary cell wall biogenesis | 0.002372742 | 1 | 8 |
Module406 | 9 | 23 | GO:0009908 | biological_process | flower development | 0.002783287 | 2 | 295 |
Module406 | 9 | 24 | GO:0090567 | biological_process | reproductive shoot system development | 0.003030483 | 2 | 308 |
Module406 | 9 | 25 | GO:0009888 | biological_process | tissue development | 0.003724957 | 2 | 342 |
Module406 | 9 | 26 | GO:0009682 | biological_process | induced systemic resistance | 0.00385356 | 1 | 13 |
Module406 | 9 | 27 | GO:0002253 | biological_process | activation of immune response | 0.006219439 | 1 | 21 |
Module406 | 9 | 28 | GO:0002218 | biological_process | activation of innate immune response | 0.006219439 | 1 | 21 |
Module406 | 9 | 29 | GO:0048367 | biological_process | shoot system development | 0.007539966 | 2 | 490 |
Module406 | 9 | 30 | GO:0045089 | biological_process | positive regulation of innate immune response | 0.007991081 | 1 | 27 |
Module406 | 9 | 31 | GO:0050778 | biological_process | positive regulation of immune response | 0.008286124 | 1 | 28 |
Module406 | 9 | 32 | GO:0002684 | biological_process | positive regulation of immune system process | 0.008286124 | 1 | 28 |
Module406 | 9 | 33 | GO:0099402 | biological_process | plant organ development | 0.00853035 | 2 | 522 |
Module406 | 9 | 34 | GO:0031349 | biological_process | positive regulation of defense response | 0.008876013 | 1 | 30 |
Module406 | 9 | 35 | GO:0009653 | biological_process | anatomical structure morphogenesis | 0.008949154 | 2 | 535 |
Module406 | 9 | 36 | GO:0009834 | biological_process | plant-type secondary cell wall biogenesis | 0.009465639 | 1 | 32 |
Module406 | 9 | 37 | GO:0002252 | biological_process | immune effector process | 0.010644101 | 1 | 36 |
Module406 | 9 | 38 | GO:0044087 | biological_process | regulation of cellular component biogenesis | 0.010938552 | 1 | 37 |
Module406 | 9 | 39 | GO:0071395 | biological_process | cellular response to jasmonic acid stimulus | 0.011232938 | 1 | 38 |
Module406 | 9 | 40 | GO:0009867 | biological_process | jasmonic acid mediated signaling pathway | 0.011232938 | 1 | 38 |
Module406 | 9 | 41 | GO:0061458 | biological_process | reproductive system development | 0.011993189 | 2 | 622 |
Module406 | 9 | 42 | GO:0048608 | biological_process | reproductive structure development | 0.011993189 | 2 | 622 |
Module406 | 9 | 43 | GO:0045088 | biological_process | regulation of innate immune response | 0.013291796 | 1 | 45 |
Module406 | 9 | 44 | GO:0050776 | biological_process | regulation of immune response | 0.01387945 | 1 | 47 |
Module406 | 9 | 45 | GO:0002682 | biological_process | regulation of immune system process | 0.014466842 | 1 | 49 |
Module406 | 9 | 46 | GO:0001101 | biological_process | response to acid chemical | 0.015322531 | 2 | 706 |
Module406 | 9 | 47 | GO:0003006 | biological_process | developmental process involved in reproduction | 0.017215823 | 2 | 750 |
Module406 | 9 | 48 | GO:0051254 | biological_process | positive regulation of RNA metabolic process | 0.017692807 | 1 | 60 |
Module406 | 9 | 49 | GO:0045893 | biological_process | positive regulation of transcription, DNA-templated | 0.017692807 | 1 | 60 |
Module406 | 9 | 50 | GO:1903508 | biological_process | positive regulation of nucleic acid-templated transcription | 0.017692807 | 1 | 60 |
Module406 | 9 | 51 | GO:1902680 | biological_process | positive regulation of RNA biosynthetic process | 0.017692807 | 1 | 60 |
Module406 | 9 | 52 | GO:0044702 | biological_process | single organism reproductive process | 0.018291058 | 2 | 774 |
Module406 | 9 | 53 | GO:0009725 | biological_process | response to hormone | 0.0190244 | 2 | 790 |
Module406 | 9 | 54 | GO:0050794 | biological_process | regulation of cellular process | 0.019122122 | 3 | 2381 |
Module406 | 9 | 55 | GO:0045935 | biological_process | positive regulation of nucleobase-containing compound metabolic process | 0.019449083 | 1 | 66 |
Module406 | 9 | 56 | GO:0009791 | biological_process | post-embryonic development | 0.020054166 | 2 | 812 |
Module406 | 9 | 57 | GO:0009832 | biological_process | plant-type cell wall biogenesis | 0.020326337 | 1 | 69 |
Module406 | 9 | 58 | GO:0009719 | biological_process | response to endogenous stimulus | 0.020866775 | 2 | 829 |
Module406 | 9 | 59 | GO:0010628 | biological_process | positive regulation of gene expression | 0.021203002 | 1 | 72 |
Module406 | 9 | 60 | GO:0009965 | biological_process | leaf morphogenesis | 0.021495093 | 1 | 73 |
Module406 | 9 | 61 | GO:0010557 | biological_process | positive regulation of macromolecule biosynthetic process | 0.021787119 | 1 | 74 |
Module406 | 9 | 62 | GO:0031328 | biological_process | positive regulation of cellular biosynthetic process | 0.022370974 | 1 | 76 |
Module406 | 9 | 63 | GO:0048584 | biological_process | positive regulation of response to stimulus | 0.022370974 | 1 | 76 |
Module406 | 9 | 64 | GO:0051173 | biological_process | positive regulation of nitrogen compound metabolic process | 0.022954568 | 1 | 78 |
Module406 | 9 | 65 | GO:0009891 | biological_process | positive regulation of biosynthetic process | 0.022954568 | 1 | 78 |
Module406 | 9 | 66 | GO:1901700 | biological_process | response to oxygen-containing compound | 0.024937893 | 2 | 910 |
Module406 | 9 | 67 | GO:0022414 | biological_process | reproductive process | 0.025304991 | 2 | 917 |
Module406 | 9 | 68 | GO:0000003 | biological_process | reproduction | 0.025568675 | 2 | 922 |
Module406 | 9 | 69 | GO:0042546 | biological_process | cell wall biogenesis | 0.025868619 | 1 | 88 |
Module406 | 9 | 70 | GO:0031347 | biological_process | regulation of defense response | 0.025868619 | 1 | 88 |
Module406 | 9 | 71 | GO:0048731 | biological_process | system development | 0.027013656 | 2 | 949 |
Module406 | 9 | 72 | GO:0010033 | biological_process | response to organic substance | 0.027667232 | 2 | 961 |
Module406 | 9 | 73 | GO:0010604 | biological_process | positive regulation of macromolecule metabolic process | 0.028195162 | 1 | 96 |
Module406 | 9 | 74 | GO:0050789 | biological_process | regulation of biological process | 0.028798452 | 3 | 2751 |
Module406 | 9 | 75 | GO:0031325 | biological_process | positive regulation of cellular metabolic process | 0.030807539 | 1 | 105 |
Module406 | 9 | 76 | GO:0080134 | biological_process | regulation of response to stress | 0.032256582 | 1 | 110 |
Module406 | 9 | 77 | GO:0071669 | biological_process | plant-type cell wall organization or biogenesis | 0.032256582 | 1 | 110 |
Module406 | 9 | 78 | GO:0009887 | biological_process | organ morphogenesis | 0.032546195 | 1 | 111 |
Module406 | 9 | 79 | GO:0048646 | biological_process | anatomical structure formation involved in morphogenesis | 0.032835744 | 1 | 112 |
Module406 | 9 | 80 | GO:0015035 | molecular_function | protein disulfide oxidoreductase activity | 0.033975639 | 1 | 113 |
Module406 | 9 | 81 | GO:0065007 | biological_process | biological regulation | 0.034255073 | 3 | 2926 |
Module406 | 9 | 82 | GO:0015036 | molecular_function | disulfide oxidoreductase activity | 0.034864891 | 1 | 116 |
Module406 | 9 | 83 | GO:0009753 | biological_process | response to jasmonic acid | 0.037748131 | 1 | 129 |
Module406 | 9 | 84 | GO:0009893 | biological_process | positive regulation of metabolic process | 0.040629015 | 1 | 139 |
Module406 | 9 | 85 | GO:0016667 | molecular_function | oxidoreductase activity, acting on a sulfur group of donors | 0.043133042 | 1 | 144 |
Module406 | 9 | 86 | GO:0045454 | biological_process | cell redox homeostasis | 0.045511665 | 1 | 156 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
tru1 | GRMZM2G060723 | 0.1109 |
tru1 | myb159 | 0.0399 |
tru1 | GRMZM2G480551 | 0.046 |
GRMZM2G047128 | GRMZM2G090226 | 0.0387 |
GRMZM2G060723 | myb159 | 0.0372 |
GRMZM2G060723 | GRMZM2G480551 | 0.0656 |
GRMZM2G090226 | myb159 | 0.0395 |
myb159 | GRMZM2G426294 | 0.0407 |
myb159 | ms22 | 0.0667 |
myb159 | GRMZM2G480551 | 0.0453 |
GRMZM2G359670 | ms22 | 0.036 |