This page contains information for Module451, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
AC210013.4_FG019 | Module451 | AT2G41840 | AT2G41840 | Ribosomal protein S5 family protein | |||
GRMZM2G038032 | rack1 | Module451 | AT1G18080 | ATARCA | Transducin/WD40 repeat-like superfamily protein | ||
GRMZM2G067456 | Module451 | AT2G18020 | EMB2296 | embryo defective 2296 | Ribosomal protein L2 family | ||
GRMZM2G072729 | Module451 | AT2G18020 | EMB2296 | embryo defective 2296 | Ribosomal protein L2 family | ||
GRMZM2G077851 | Module451 | AT2G18020 | EMB2296 | embryo defective 2296 | Ribosomal protein L2 family | ||
GRMZM2G092663 | Module451 | AT2G41840 | AT2G41840 | Ribosomal protein S5 family protein | |||
GRMZM2G134109 | Module451 | AT5G27700 | AT5G27700 | Ribosomal protein S21e | |||
GRMZM2G168149 | Module451 | AT2G41840 | AT2G41840 | Ribosomal protein S5 family protein |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module451 | 8 | 1 | GO:0022626 | cellular_component | cytosolic ribosome | 5.93E-13 | 8 | 316 |
Module451 | 8 | 2 | GO:0044445 | cellular_component | cytosolic part | 1.23E-12 | 8 | 346 |
Module451 | 8 | 3 | GO:0044391 | cellular_component | ribosomal subunit | 5.62E-11 | 7 | 273 |
Module451 | 8 | 4 | GO:0006412 | biological_process | translation | 1.23E-10 | 8 | 781 |
Module451 | 8 | 5 | GO:0043043 | biological_process | peptide biosynthetic process | 1.34E-10 | 8 | 789 |
Module451 | 8 | 6 | GO:0005840 | cellular_component | ribosome | 1.41E-10 | 8 | 623 |
Module451 | 8 | 7 | GO:0006518 | biological_process | peptide metabolic process | 1.68E-10 | 8 | 812 |
Module451 | 8 | 8 | GO:0043604 | biological_process | amide biosynthetic process | 1.86E-10 | 8 | 822 |
Module451 | 8 | 9 | GO:0003735 | molecular_function | structural constituent of ribosome | 1.96E-10 | 7 | 505 |
Module451 | 8 | 10 | GO:0043603 | biological_process | cellular amide metabolic process | 2.85E-10 | 8 | 867 |
Module451 | 8 | 11 | GO:1990904 | cellular_component | ribonucleoprotein complex | 4.58E-10 | 8 | 721 |
Module451 | 8 | 12 | GO:0030529 | cellular_component | intracellular ribonucleoprotein complex | 4.58E-10 | 8 | 721 |
Module451 | 8 | 13 | GO:0005198 | molecular_function | structural molecule activity | 6.56E-10 | 7 | 600 |
Module451 | 8 | 14 | GO:0005730 | cellular_component | nucleolus | 1.67E-09 | 7 | 442 |
Module451 | 8 | 15 | GO:1901566 | biological_process | organonitrogen compound biosynthetic process | 8.06E-09 | 8 | 1315 |
Module451 | 8 | 16 | GO:0031981 | cellular_component | nuclear lumen | 1.43E-08 | 7 | 601 |
Module451 | 8 | 17 | GO:0070013 | cellular_component | intracellular organelle lumen | 2.93E-08 | 7 | 666 |
Module451 | 8 | 18 | GO:0043233 | cellular_component | organelle lumen | 2.93E-08 | 7 | 666 |
Module451 | 8 | 19 | GO:0031974 | cellular_component | membrane-enclosed lumen | 3.18E-08 | 7 | 674 |
Module451 | 8 | 20 | GO:0005829 | cellular_component | cytosol | 5.92E-08 | 8 | 1321 |
Module451 | 8 | 21 | GO:0044428 | cellular_component | nuclear part | 5.99E-08 | 7 | 738 |
Module451 | 8 | 22 | GO:0043228 | cellular_component | non-membrane-bounded organelle | 6.36E-08 | 8 | 1333 |
Module451 | 8 | 23 | GO:0043232 | cellular_component | intracellular non-membrane-bounded organelle | 6.36E-08 | 8 | 1333 |
Module451 | 8 | 24 | GO:0003723 | molecular_function | RNA binding | 6.85E-08 | 6 | 611 |
Module451 | 8 | 25 | GO:1901564 | biological_process | organonitrogen compound metabolic process | 9.10E-08 | 8 | 1779 |
Module451 | 8 | 26 | GO:0022627 | cellular_component | cytosolic small ribosomal subunit | 1.37E-07 | 4 | 72 |
Module451 | 8 | 27 | GO:0015935 | cellular_component | small ribosomal subunit | 7.86E-07 | 4 | 111 |
Module451 | 8 | 28 | GO:0034645 | biological_process | cellular macromolecule biosynthetic process | 1.42E-06 | 8 | 2507 |
Module451 | 8 | 29 | GO:0010467 | biological_process | gene expression | 1.44E-06 | 8 | 2512 |
Module451 | 8 | 30 | GO:0044271 | biological_process | cellular nitrogen compound biosynthetic process | 1.51E-06 | 8 | 2526 |
Module451 | 8 | 31 | GO:0009059 | biological_process | macromolecule biosynthetic process | 1.52E-06 | 8 | 2528 |
Module451 | 8 | 32 | GO:0032991 | cellular_component | macromolecular complex | 1.54E-06 | 8 | 1984 |
Module451 | 8 | 33 | GO:0044267 | biological_process | cellular protein metabolic process | 3.28E-06 | 8 | 2783 |
Module451 | 8 | 34 | GO:0019538 | biological_process | protein metabolic process | 1.11E-05 | 8 | 3241 |
Module451 | 8 | 35 | GO:0034641 | biological_process | cellular nitrogen compound metabolic process | 2.28E-05 | 8 | 3545 |
Module451 | 8 | 36 | GO:0044249 | biological_process | cellular biosynthetic process | 2.29E-05 | 8 | 3546 |
Module451 | 8 | 37 | GO:1901576 | biological_process | organic substance biosynthetic process | 2.61E-05 | 8 | 3606 |
Module451 | 8 | 38 | GO:0009058 | biological_process | biosynthetic process | 3.65E-05 | 8 | 3760 |
Module451 | 8 | 39 | GO:0006807 | biological_process | nitrogen compound metabolic process | 4.77E-05 | 8 | 3887 |
Module451 | 8 | 40 | GO:0044446 | cellular_component | intracellular organelle part | 4.90E-05 | 8 | 3055 |
Module451 | 8 | 41 | GO:0044422 | cellular_component | organelle part | 4.97E-05 | 8 | 3060 |
Module451 | 8 | 42 | GO:0009507 | cellular_component | chloroplast | 6.48E-05 | 7 | 2032 |
Module451 | 8 | 43 | GO:0009536 | cellular_component | plastid | 9.24E-05 | 7 | 2141 |
Module451 | 8 | 44 | GO:0022625 | cellular_component | cytosolic large ribosomal subunit | 0.000104651 | 3 | 133 |
Module451 | 8 | 45 | GO:0015934 | cellular_component | large ribosomal subunit | 0.000191384 | 3 | 163 |
Module451 | 8 | 46 | GO:0005634 | cellular_component | nucleus | 0.000213733 | 7 | 2423 |
Module451 | 8 | 47 | GO:0044260 | biological_process | cellular macromolecule metabolic process | 0.000336137 | 8 | 4961 |
Module451 | 8 | 48 | GO:0043170 | biological_process | macromolecule metabolic process | 0.000747666 | 8 | 5482 |
Module451 | 8 | 49 | GO:0003676 | molecular_function | nucleic acid binding | 0.00092124 | 6 | 3117 |
Module451 | 8 | 50 | GO:0005886 | cellular_component | plasma membrane | 0.001055267 | 6 | 2055 |
Module451 | 8 | 51 | GO:0071944 | cellular_component | cell periphery | 0.002837646 | 6 | 2455 |
Module451 | 8 | 52 | GO:0044444 | cellular_component | cytoplasmic part | 0.004772648 | 8 | 5412 |
Module451 | 8 | 53 | GO:0044237 | biological_process | cellular metabolic process | 0.005619282 | 8 | 7053 |
Module451 | 8 | 54 | GO:0010476 | biological_process | gibberellin mediated signaling pathway | 0.007693408 | 1 | 13 |
Module451 | 8 | 55 | GO:0044238 | biological_process | primary metabolic process | 0.007945933 | 8 | 7365 |
Module451 | 8 | 56 | GO:0071370 | biological_process | cellular response to gibberellin stimulus | 0.008283058 | 1 | 14 |
Module451 | 8 | 57 | GO:0005618 | cellular_component | cell wall | 0.009127268 | 3 | 622 |
Module451 | 8 | 58 | GO:0030312 | cellular_component | external encapsulating structure | 0.009168066 | 3 | 623 |
Module451 | 8 | 59 | GO:0005737 | cellular_component | cytoplasm | 0.009525751 | 8 | 5900 |
Module451 | 8 | 60 | GO:0071704 | biological_process | organic substance metabolic process | 0.01253934 | 8 | 7797 |
Module451 | 8 | 61 | GO:0005773 | cellular_component | vacuole | 0.020635948 | 3 | 838 |
Module451 | 8 | 62 | GO:0043229 | cellular_component | intracellular organelle | 0.025216096 | 8 | 6663 |
Module451 | 8 | 63 | GO:0043226 | cellular_component | organelle | 0.025276744 | 8 | 6665 |
Module451 | 8 | 64 | GO:1901363 | molecular_function | heterocyclic compound binding | 0.04589695 | 6 | 6456 |
Module451 | 8 | 65 | GO:0009739 | biological_process | response to gibberellin | 0.045958828 | 1 | 79 |
Module451 | 8 | 66 | GO:0097159 | molecular_function | organic cyclic compound binding | 0.046074945 | 6 | 6461 |
Module451 | 8 | 67 | GO:0034248 | biological_process | regulation of cellular amide metabolic process | 0.046528532 | 1 | 80 |
Module451 | 8 | 68 | GO:0006417 | biological_process | regulation of translation | 0.046528532 | 1 | 80 |
Module451 | 8 | 69 | GO:0009845 | biological_process | seed germination | 0.048235859 | 1 | 83 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
AC210013.4_FG019 | GRMZM2G067456 | 0.0442 |
AC210013.4_FG019 | GRMZM2G072729 | 0.0357 |
AC210013.4_FG019 | GRMZM2G077851 | 0.0457 |
AC210013.4_FG019 | GRMZM2G092663 | 0.0597 |
AC210013.4_FG019 | GRMZM2G168149 | 0.0419 |
rack1 | GRMZM2G067456 | 0.0354 |
GRMZM2G067456 | GRMZM2G072729 | 0.0544 |
GRMZM2G067456 | GRMZM2G077851 | 0.0581 |
GRMZM2G067456 | GRMZM2G092663 | 0.0408 |
GRMZM2G067456 | GRMZM2G134109 | 0.0403 |
GRMZM2G072729 | GRMZM2G077851 | 0.0484 |
GRMZM2G072729 | GRMZM2G134109 | 0.0356 |