This page contains information for Module454, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
AC230013.2_FG007 | Module454 | AT2G34480 | AT2G34480 | Ribosomal protein L18ae/LX family protein | |||
GRMZM2G031545 | Module454 | AT1G30230 | eEF-1Bb1 | eukaryotic elongation factor 1B beta 1 | Glutathione S-transferase, C-terminal-like;Translation elongation factor EF1B/ribosomal protein S6 | ||
GRMZM2G144387 | Module454 | AT1G08360 | AT1G08360 | Ribosomal protein L1p/L10e family | |||
GRMZM2G303374 | Module454 | AT3G10950 | AT3G10950 | Zinc-binding ribosomal protein family protein | |||
GRMZM2G178576 | ndpk1 | Module454 | AT4G09320 | NDPK1 | Nucleoside diphosphate kinase family protein | ||
GRMZM2G420713 | Module454 | AT1G47500 | RBP47C' | RNA-binding protein 47C' | RNA-binding protein 47C' | ||
GRMZM2G439201 | Module454 | AT5G19510 | AT5G19510 | Translation elongation factor EF1B/ribosomal protein S6 family protein | |||
GRMZM2G122871 | elfg1 | Module454 | AT1G57720 | AT1G57720 | Translation elongation factor EF1B, gamma chain |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module454 | 8 | 1 | GO:0005853 | cellular_component | eukaryotic translation elongation factor 1 complex | 3.57E-09 | 3 | 7 |
Module454 | 8 | 2 | GO:1901566 | biological_process | organonitrogen compound biosynthetic process | 8.30E-08 | 7 | 1315 |
Module454 | 8 | 3 | GO:0006412 | biological_process | translation | 2.48E-07 | 6 | 781 |
Module454 | 8 | 4 | GO:0043043 | biological_process | peptide biosynthetic process | 2.63E-07 | 6 | 789 |
Module454 | 8 | 5 | GO:0006518 | biological_process | peptide metabolic process | 3.12E-07 | 6 | 812 |
Module454 | 8 | 6 | GO:0043604 | biological_process | amide biosynthetic process | 3.36E-07 | 6 | 822 |
Module454 | 8 | 7 | GO:0043603 | biological_process | cellular amide metabolic process | 4.62E-07 | 6 | 867 |
Module454 | 8 | 8 | GO:1901564 | biological_process | organonitrogen compound metabolic process | 6.92E-07 | 7 | 1779 |
Module454 | 8 | 9 | GO:0003746 | molecular_function | translation elongation factor activity | 9.31E-07 | 3 | 43 |
Module454 | 8 | 10 | GO:0006414 | biological_process | translational elongation | 3.53E-06 | 3 | 64 |
Module454 | 8 | 11 | GO:0044271 | biological_process | cellular nitrogen compound biosynthetic process | 8.08E-06 | 7 | 2526 |
Module454 | 8 | 12 | GO:0008135 | molecular_function | translation factor activity, RNA binding | 3.30E-05 | 3 | 140 |
Module454 | 8 | 13 | GO:0032991 | cellular_component | macromolecular complex | 4.39E-05 | 6 | 1984 |
Module454 | 8 | 14 | GO:0034641 | biological_process | cellular nitrogen compound metabolic process | 8.68E-05 | 7 | 3545 |
Module454 | 8 | 15 | GO:0044249 | biological_process | cellular biosynthetic process | 8.70E-05 | 7 | 3546 |
Module454 | 8 | 16 | GO:1901576 | biological_process | organic substance biosynthetic process | 9.78E-05 | 7 | 3606 |
Module454 | 8 | 17 | GO:0003723 | molecular_function | RNA binding | 0.000118368 | 4 | 611 |
Module454 | 8 | 18 | GO:0009058 | biological_process | biosynthetic process | 0.000131111 | 7 | 3760 |
Module454 | 8 | 19 | GO:0005829 | cellular_component | cytosol | 0.000164145 | 5 | 1321 |
Module454 | 8 | 20 | GO:0006807 | biological_process | nitrogen compound metabolic process | 0.000165464 | 7 | 3887 |
Module454 | 8 | 21 | GO:0034645 | biological_process | cellular macromolecule biosynthetic process | 0.000242807 | 6 | 2507 |
Module454 | 8 | 22 | GO:0010467 | biological_process | gene expression | 0.000245637 | 6 | 2512 |
Module454 | 8 | 23 | GO:0009059 | biological_process | macromolecule biosynthetic process | 0.000254876 | 6 | 2528 |
Module454 | 8 | 24 | GO:0044267 | biological_process | cellular protein metabolic process | 0.000445149 | 6 | 2783 |
Module454 | 8 | 25 | GO:2001006 | biological_process | regulation of cellulose biosynthetic process | 0.001038653 | 1 | 2 |
Module454 | 8 | 26 | GO:0032950 | biological_process | regulation of beta-glucan metabolic process | 0.001038653 | 1 | 2 |
Module454 | 8 | 27 | GO:0032951 | biological_process | regulation of beta-glucan biosynthetic process | 0.001038653 | 1 | 2 |
Module454 | 8 | 28 | GO:0019538 | biological_process | protein metabolic process | 0.00107196 | 6 | 3241 |
Module454 | 8 | 29 | GO:0003735 | molecular_function | structural constituent of ribosome | 0.001446887 | 3 | 505 |
Module454 | 8 | 30 | GO:0010962 | biological_process | regulation of glucan biosynthetic process | 0.001557632 | 1 | 3 |
Module454 | 8 | 31 | GO:0032885 | biological_process | regulation of polysaccharide biosynthetic process | 0.001557632 | 1 | 3 |
Module454 | 8 | 32 | GO:0032881 | biological_process | regulation of polysaccharide metabolic process | 0.00207638 | 1 | 4 |
Module454 | 8 | 33 | GO:0022625 | cellular_component | cytosolic large ribosomal subunit | 0.002287644 | 2 | 133 |
Module454 | 8 | 34 | GO:0005198 | molecular_function | structural molecule activity | 0.002375829 | 3 | 600 |
Module454 | 8 | 35 | GO:0071668 | biological_process | plant-type cell wall assembly | 0.002594898 | 1 | 5 |
Module454 | 8 | 36 | GO:0070726 | biological_process | cell wall assembly | 0.002594898 | 1 | 5 |
Module454 | 8 | 37 | GO:0015934 | cellular_component | large ribosomal subunit | 0.003414705 | 2 | 163 |
Module454 | 8 | 38 | GO:0005840 | cellular_component | ribosome | 0.003579701 | 3 | 623 |
Module454 | 8 | 39 | GO:0004550 | molecular_function | nucleoside diphosphate kinase activity | 0.004381687 | 1 | 9 |
Module454 | 8 | 40 | GO:0006183 | biological_process | GTP biosynthetic process | 0.004666658 | 1 | 9 |
Module454 | 8 | 41 | GO:0006228 | biological_process | UTP biosynthetic process | 0.004666658 | 1 | 9 |
Module454 | 8 | 42 | GO:0046051 | biological_process | UTP metabolic process | 0.004666658 | 1 | 9 |
Module454 | 8 | 43 | GO:0046039 | biological_process | GTP metabolic process | 0.004666658 | 1 | 9 |
Module454 | 8 | 44 | GO:0010675 | biological_process | regulation of cellular carbohydrate metabolic process | 0.005184022 | 1 | 10 |
Module454 | 8 | 45 | GO:1990904 | cellular_component | ribonucleoprotein complex | 0.005432621 | 3 | 721 |
Module454 | 8 | 46 | GO:0030529 | cellular_component | intracellular ribonucleoprotein complex | 0.005432621 | 3 | 721 |
Module454 | 8 | 47 | GO:0006241 | biological_process | CTP biosynthetic process | 0.005701155 | 1 | 11 |
Module454 | 8 | 48 | GO:0009148 | biological_process | pyrimidine nucleoside triphosphate biosynthetic process | 0.005701155 | 1 | 11 |
Module454 | 8 | 49 | GO:1901070 | biological_process | guanosine-containing compound biosynthetic process | 0.005701155 | 1 | 11 |
Module454 | 8 | 50 | GO:0009208 | biological_process | pyrimidine ribonucleoside triphosphate metabolic process | 0.005701155 | 1 | 11 |
Module454 | 8 | 51 | GO:0009209 | biological_process | pyrimidine ribonucleoside triphosphate biosynthetic process | 0.005701155 | 1 | 11 |
Module454 | 8 | 52 | GO:0046036 | biological_process | CTP metabolic process | 0.005701155 | 1 | 11 |
Module454 | 8 | 53 | GO:0009147 | biological_process | pyrimidine nucleoside triphosphate metabolic process | 0.006218057 | 1 | 12 |
Module454 | 8 | 54 | GO:0043255 | biological_process | regulation of carbohydrate biosynthetic process | 0.007251171 | 1 | 14 |
Module454 | 8 | 55 | GO:0003676 | molecular_function | nucleic acid binding | 0.008279991 | 5 | 3117 |
Module454 | 8 | 56 | GO:0046132 | biological_process | pyrimidine ribonucleoside biosynthetic process | 0.009314638 | 1 | 18 |
Module454 | 8 | 57 | GO:0046134 | biological_process | pyrimidine nucleoside biosynthetic process | 0.009314638 | 1 | 18 |
Module454 | 8 | 58 | GO:0044391 | cellular_component | ribosomal subunit | 0.009336936 | 2 | 273 |
Module454 | 8 | 59 | GO:0009220 | biological_process | pyrimidine ribonucleotide biosynthetic process | 0.00982993 | 1 | 19 |
Module454 | 8 | 60 | GO:0009218 | biological_process | pyrimidine ribonucleotide metabolic process | 0.00982993 | 1 | 19 |
Module454 | 8 | 61 | GO:1901068 | biological_process | guanosine-containing compound metabolic process | 0.010344992 | 1 | 20 |
Module454 | 8 | 62 | GO:0044237 | biological_process | cellular metabolic process | 0.010741713 | 7 | 7053 |
Module454 | 8 | 63 | GO:0006109 | biological_process | regulation of carbohydrate metabolic process | 0.011374427 | 1 | 22 |
Module454 | 8 | 64 | GO:0044260 | biological_process | cellular macromolecule metabolic process | 0.011907351 | 6 | 4961 |
Module454 | 8 | 65 | GO:0022626 | cellular_component | cytosolic ribosome | 0.012379296 | 2 | 316 |
Module454 | 8 | 66 | GO:0046131 | biological_process | pyrimidine ribonucleoside metabolic process | 0.012402944 | 1 | 24 |
Module454 | 8 | 67 | GO:0006213 | biological_process | pyrimidine nucleoside metabolic process | 0.012402944 | 1 | 24 |
Module454 | 8 | 68 | GO:0009955 | biological_process | adaxial/abaxial pattern specification | 0.012916859 | 1 | 25 |
Module454 | 8 | 69 | GO:0044238 | biological_process | primary metabolic process | 0.014545225 | 7 | 7365 |
Module454 | 8 | 70 | GO:0044445 | cellular_component | cytosolic part | 0.014731866 | 2 | 346 |
Module454 | 8 | 71 | GO:0016776 | molecular_function | phosphotransferase activity, phosphate group as acceptor | 0.015021829 | 1 | 31 |
Module454 | 8 | 72 | GO:0005886 | cellular_component | plasma membrane | 0.015366601 | 4 | 2055 |
Module454 | 8 | 73 | GO:0006221 | biological_process | pyrimidine nucleotide biosynthetic process | 0.015995536 | 1 | 31 |
Module454 | 8 | 74 | GO:0006220 | biological_process | pyrimidine nucleotide metabolic process | 0.016507847 | 1 | 32 |
Module454 | 8 | 75 | GO:0044444 | cellular_component | cytoplasmic part | 0.018167886 | 6 | 5412 |
Module454 | 8 | 76 | GO:0019205 | molecular_function | nucleobase-containing compound kinase activity | 0.019345853 | 1 | 40 |
Module454 | 8 | 77 | GO:0046686 | biological_process | response to cadmium ion | 0.019433332 | 2 | 433 |
Module454 | 8 | 78 | GO:0043170 | biological_process | macromolecule metabolic process | 0.020634983 | 6 | 5482 |
Module454 | 8 | 79 | GO:0071704 | biological_process | organic substance metabolic process | 0.021680664 | 7 | 7797 |
Module454 | 8 | 80 | GO:0072528 | biological_process | pyrimidine-containing compound biosynthetic process | 0.022637778 | 1 | 44 |
Module454 | 8 | 81 | GO:0009808 | biological_process | lignin metabolic process | 0.023147124 | 1 | 45 |
Module454 | 8 | 82 | GO:0043234 | cellular_component | protein complex | 0.026993204 | 3 | 1283 |
Module454 | 8 | 83 | GO:0072527 | biological_process | pyrimidine-containing compound metabolic process | 0.027213708 | 1 | 53 |
Module454 | 8 | 84 | GO:0009664 | biological_process | plant-type cell wall organization | 0.027213708 | 1 | 53 |
Module454 | 8 | 85 | GO:0010038 | biological_process | response to metal ion | 0.027335504 | 2 | 519 |
Module454 | 8 | 86 | GO:0030244 | biological_process | cellulose biosynthetic process | 0.027721009 | 1 | 54 |
Module454 | 8 | 87 | GO:0071944 | cellular_component | cell periphery | 0.029126957 | 4 | 2455 |
Module454 | 8 | 88 | GO:0030243 | biological_process | cellulose metabolic process | 0.029747947 | 1 | 58 |
Module454 | 8 | 89 | GO:0010043 | biological_process | response to zinc ion | 0.029747947 | 1 | 58 |
Module454 | 8 | 90 | GO:0043228 | cellular_component | non-membrane-bounded organelle | 0.029927843 | 3 | 1333 |
Module454 | 8 | 91 | GO:0043232 | cellular_component | intracellular non-membrane-bounded organelle | 0.029927843 | 3 | 1333 |
Module454 | 8 | 92 | GO:0009145 | biological_process | purine nucleoside triphosphate biosynthetic process | 0.030254115 | 1 | 59 |
Module454 | 8 | 93 | GO:0009206 | biological_process | purine ribonucleoside triphosphate biosynthetic process | 0.030254115 | 1 | 59 |
Module454 | 8 | 94 | GO:0005737 | cellular_component | cytoplasm | 0.030504884 | 6 | 5900 |
Module454 | 8 | 95 | GO:0009201 | biological_process | ribonucleoside triphosphate biosynthetic process | 0.031265773 | 1 | 61 |
Module454 | 8 | 96 | GO:0009506 | cellular_component | plasmodesma | 0.031850091 | 2 | 520 |
Module454 | 8 | 97 | GO:0055044 | cellular_component | symplast | 0.031850091 | 2 | 520 |
Module454 | 8 | 98 | GO:0005911 | cellular_component | cell-cell junction | 0.031850091 | 2 | 520 |
Module454 | 8 | 99 | GO:0030054 | cellular_component | cell junction | 0.031850091 | 2 | 520 |
Module454 | 8 | 100 | GO:0009142 | biological_process | nucleoside triphosphate biosynthetic process | 0.032276525 | 1 | 63 |
Module454 | 8 | 101 | GO:0051274 | biological_process | beta-glucan biosynthetic process | 0.035303361 | 1 | 69 |
Module454 | 8 | 102 | GO:0009832 | biological_process | plant-type cell wall biogenesis | 0.035303361 | 1 | 69 |
Module454 | 8 | 103 | GO:0051273 | biological_process | beta-glucan metabolic process | 0.037316741 | 1 | 73 |
Module454 | 8 | 104 | GO:0009698 | biological_process | phenylpropanoid metabolic process | 0.039326517 | 1 | 77 |
Module454 | 8 | 105 | GO:0046129 | biological_process | purine ribonucleoside biosynthetic process | 0.043835369 | 1 | 86 |
Module454 | 8 | 106 | GO:0042451 | biological_process | purine nucleoside biosynthetic process | 0.043835369 | 1 | 86 |
Module454 | 8 | 107 | GO:1990267 | biological_process | response to transition metal nanoparticle | 0.044834869 | 1 | 88 |
Module454 | 8 | 108 | GO:0042546 | biological_process | cell wall biogenesis | 0.044834869 | 1 | 88 |
Module454 | 8 | 109 | GO:1901363 | molecular_function | heterocyclic compound binding | 0.04589695 | 6 | 6456 |
Module454 | 8 | 110 | GO:0097159 | molecular_function | organic cyclic compound binding | 0.046074945 | 6 | 6461 |
Module454 | 8 | 111 | GO:0006165 | biological_process | nucleoside diphosphate phosphorylation | 0.04633244 | 1 | 91 |
Module454 | 8 | 112 | GO:0009152 | biological_process | purine ribonucleotide biosynthetic process | 0.04633244 | 1 | 91 |
Module454 | 8 | 113 | GO:0006164 | biological_process | purine nucleotide biosynthetic process | 0.04832607 | 1 | 95 |
Module454 | 8 | 114 | GO:0009132 | biological_process | nucleoside diphosphate metabolic process | 0.04832607 | 1 | 95 |
Module454 | 8 | 115 | GO:0042455 | biological_process | ribonucleoside biosynthetic process | 0.049321545 | 1 | 97 |
Module454 | 8 | 116 | GO:0009163 | biological_process | nucleoside biosynthetic process | 0.049321545 | 1 | 97 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
AC230013.2_FG007 | GRMZM2G439201 | 0.0355 |
GRMZM2G031545 | GRMZM2G144387 | 0.0386 |
GRMZM2G031545 | GRMZM2G303374 | 0.0351 |
GRMZM2G031545 | GRMZM2G439201 | 0.038 |
GRMZM2G144387 | GRMZM2G439201 | 0.0431 |
GRMZM2G303374 | ndpk1 | 0.0351 |
GRMZM2G303374 | GRMZM2G439201 | 0.035 |
ndpk1 | GRMZM2G439201 | 0.0381 |
GRMZM2G420713 | GRMZM2G439201 | 0.0355 |
GRMZM2G439201 | elfg1 | 0.0362 |