This page contains information for Module489, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
GRMZM2G064896 | ccr2 | Module489 | AT3G52730 | AT3G52730 | ubiquinol-cytochrome C reductase UQCRX/QCR9-like family protein | ||
GRMZM2G048013 | Module489 | AT4G21105 | AT4G21105 | cytochrome-c oxidases;electron carriers | |||
GRMZM2G092988 | Module489 | AT1G21065 | AT1G21065 | ||||
GRMZM2G106607 | Module489 | AT1G76200 | AT1G76200 | ||||
GRMZM2G124791 | Module489 | AT2G20820 | AT2G20820 | ||||
GRMZM2G165483 | Module489 | AT1G15120 | AT1G15120 | Ubiquinol-cytochrome C reductase hinge protein | |||
GRMZM2G171476 | Module489 | AT3G52730 | AT3G52730 | ubiquinol-cytochrome C reductase UQCRX/QCR9-like family protein | |||
GRMZM2G451281 | Module489 | AT1G15120 | AT1G15120 | Ubiquinol-cytochrome C reductase hinge protein |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module489 | 8 | 1 | GO:0006122 | biological_process | mitochondrial electron transport, ubiquinol to cytochrome c | 4.59E-13 | 4 | 9 |
Module489 | 8 | 2 | GO:0070469 | cellular_component | respiratory chain | 1.12E-12 | 6 | 110 |
Module489 | 8 | 3 | GO:0005743 | cellular_component | mitochondrial inner membrane | 1.24E-11 | 6 | 163 |
Module489 | 8 | 4 | GO:0031966 | cellular_component | mitochondrial membrane | 3.69E-11 | 6 | 195 |
Module489 | 8 | 5 | GO:0042775 | biological_process | mitochondrial ATP synthesis coupled electron transport | 5.44E-11 | 4 | 26 |
Module489 | 8 | 6 | GO:0019866 | cellular_component | organelle inner membrane | 5.62E-11 | 6 | 209 |
Module489 | 8 | 7 | GO:0005740 | cellular_component | mitochondrial envelope | 6.13E-11 | 6 | 212 |
Module489 | 8 | 8 | GO:0044429 | cellular_component | mitochondrial part | 2.06E-10 | 6 | 259 |
Module489 | 8 | 9 | GO:0042773 | biological_process | ATP synthesis coupled electron transport | 2.40E-10 | 4 | 37 |
Module489 | 8 | 10 | GO:0006119 | biological_process | oxidative phosphorylation | 2.40E-10 | 4 | 37 |
Module489 | 8 | 11 | GO:0022904 | biological_process | respiratory electron transport chain | 7.06E-10 | 4 | 48 |
Module489 | 8 | 12 | GO:0045333 | biological_process | cellular respiration | 1.36E-08 | 4 | 99 |
Module489 | 8 | 13 | GO:0015980 | biological_process | energy derivation by oxidation of organic compounds | 2.01E-08 | 4 | 109 |
Module489 | 8 | 14 | GO:0022900 | biological_process | electron transport chain | 5.70E-08 | 4 | 141 |
Module489 | 8 | 15 | GO:0005746 | cellular_component | mitochondrial respiratory chain | 8.37E-08 | 4 | 93 |
Module489 | 8 | 16 | GO:0046034 | biological_process | ATP metabolic process | 1.30E-07 | 4 | 173 |
Module489 | 8 | 17 | GO:0009144 | biological_process | purine nucleoside triphosphate metabolic process | 1.59E-07 | 4 | 182 |
Module489 | 8 | 18 | GO:0009205 | biological_process | purine ribonucleoside triphosphate metabolic process | 1.59E-07 | 4 | 182 |
Module489 | 8 | 19 | GO:0009199 | biological_process | ribonucleoside triphosphate metabolic process | 1.66E-07 | 4 | 184 |
Module489 | 8 | 20 | GO:0009141 | biological_process | nucleoside triphosphate metabolic process | 1.78E-07 | 4 | 187 |
Module489 | 8 | 21 | GO:0009167 | biological_process | purine ribonucleoside monophosphate metabolic process | 2.02E-07 | 4 | 193 |
Module489 | 8 | 22 | GO:0009126 | biological_process | purine nucleoside monophosphate metabolic process | 2.02E-07 | 4 | 193 |
Module489 | 8 | 23 | GO:0031090 | cellular_component | organelle membrane | 2.26E-07 | 6 | 826 |
Module489 | 8 | 24 | GO:0009161 | biological_process | ribonucleoside monophosphate metabolic process | 2.42E-07 | 4 | 202 |
Module489 | 8 | 25 | GO:0009123 | biological_process | nucleoside monophosphate metabolic process | 2.57E-07 | 4 | 205 |
Module489 | 8 | 26 | GO:0031967 | cellular_component | organelle envelope | 2.57E-07 | 6 | 844 |
Module489 | 8 | 27 | GO:0031975 | cellular_component | envelope | 2.74E-07 | 6 | 853 |
Module489 | 8 | 28 | GO:0009150 | biological_process | purine ribonucleotide metabolic process | 4.01E-07 | 4 | 229 |
Module489 | 8 | 29 | GO:0046128 | biological_process | purine ribonucleoside metabolic process | 4.08E-07 | 4 | 230 |
Module489 | 8 | 30 | GO:0042278 | biological_process | purine nucleoside metabolic process | 4.15E-07 | 4 | 231 |
Module489 | 8 | 31 | GO:0005739 | cellular_component | mitochondrion | 4.21E-07 | 6 | 916 |
Module489 | 8 | 32 | GO:0006163 | biological_process | purine nucleotide metabolic process | 4.68E-07 | 4 | 238 |
Module489 | 8 | 33 | GO:0009259 | biological_process | ribonucleotide metabolic process | 4.76E-07 | 4 | 239 |
Module489 | 8 | 34 | GO:0044455 | cellular_component | mitochondrial membrane part | 5.16E-07 | 4 | 146 |
Module489 | 8 | 35 | GO:0009119 | biological_process | ribonucleoside metabolic process | 5.43E-07 | 4 | 247 |
Module489 | 8 | 36 | GO:0015078 | molecular_function | hydrogen ion transmembrane transporter activity | 6.35E-07 | 3 | 142 |
Module489 | 8 | 37 | GO:0009116 | biological_process | nucleoside metabolic process | 6.98E-07 | 4 | 263 |
Module489 | 8 | 38 | GO:0019693 | biological_process | ribose phosphate metabolic process | 7.64E-07 | 4 | 269 |
Module489 | 8 | 39 | GO:0072521 | biological_process | purine-containing compound metabolic process | 7.76E-07 | 4 | 270 |
Module489 | 8 | 40 | GO:1901657 | biological_process | glycosyl compound metabolic process | 9.50E-07 | 4 | 284 |
Module489 | 8 | 41 | GO:0008121 | molecular_function | ubiquinol-cytochrome-c reductase activity | 1.47E-06 | 2 | 12 |
Module489 | 8 | 42 | GO:0016681 | molecular_function | oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor | 1.47E-06 | 2 | 12 |
Module489 | 8 | 43 | GO:0009117 | biological_process | nucleotide metabolic process | 1.73E-06 | 4 | 330 |
Module489 | 8 | 44 | GO:0015077 | molecular_function | monovalent inorganic cation transmembrane transporter activity | 1.81E-06 | 3 | 201 |
Module489 | 8 | 45 | GO:0006753 | biological_process | nucleoside phosphate metabolic process | 1.91E-06 | 4 | 338 |
Module489 | 8 | 46 | GO:0006091 | biological_process | generation of precursor metabolites and energy | 1.93E-06 | 4 | 339 |
Module489 | 8 | 47 | GO:0055086 | biological_process | nucleobase-containing small molecule metabolic process | 3.24E-06 | 4 | 386 |
Module489 | 8 | 48 | GO:0022890 | molecular_function | inorganic cation transmembrane transporter activity | 5.08E-06 | 3 | 283 |
Module489 | 8 | 49 | GO:1901135 | biological_process | carbohydrate derivative metabolic process | 1.07E-05 | 4 | 521 |
Module489 | 8 | 50 | GO:0008324 | molecular_function | cation transmembrane transporter activity | 1.14E-05 | 3 | 370 |
Module489 | 8 | 51 | GO:0019637 | biological_process | organophosphate metabolic process | 1.23E-05 | 4 | 540 |
Module489 | 8 | 52 | GO:0098803 | cellular_component | respiratory chain complex | 1.30E-05 | 3 | 93 |
Module489 | 8 | 53 | GO:0016679 | molecular_function | oxidoreductase activity, acting on diphenols and related substances as donors | 1.57E-05 | 2 | 38 |
Module489 | 8 | 54 | GO:0098800 | cellular_component | inner mitochondrial membrane protein complex | 2.66E-05 | 3 | 118 |
Module489 | 8 | 55 | GO:0015075 | molecular_function | ion transmembrane transporter activity | 2.88E-05 | 3 | 504 |
Module489 | 8 | 56 | GO:0098798 | cellular_component | mitochondrial protein complex | 3.24E-05 | 3 | 126 |
Module489 | 8 | 57 | GO:0044425 | cellular_component | membrane part | 3.33E-05 | 6 | 1895 |
Module489 | 8 | 58 | GO:1990204 | cellular_component | oxidoreductase complex | 3.72E-05 | 3 | 132 |
Module489 | 8 | 59 | GO:0045275 | cellular_component | respiratory chain complex III | 4.11E-05 | 2 | 18 |
Module489 | 8 | 60 | GO:1902495 | cellular_component | transmembrane transporter complex | 4.11E-05 | 2 | 18 |
Module489 | 8 | 61 | GO:0005750 | cellular_component | mitochondrial respiratory chain complex III | 4.11E-05 | 2 | 18 |
Module489 | 8 | 62 | GO:1990351 | cellular_component | transporter complex | 4.11E-05 | 2 | 18 |
Module489 | 8 | 63 | GO:0022891 | molecular_function | substrate-specific transmembrane transporter activity | 5.51E-05 | 3 | 625 |
Module489 | 8 | 64 | GO:0022892 | molecular_function | substrate-specific transporter activity | 7.67E-05 | 3 | 698 |
Module489 | 8 | 65 | GO:0070069 | cellular_component | cytochrome complex | 8.70E-05 | 2 | 26 |
Module489 | 8 | 66 | GO:0022857 | molecular_function | transmembrane transporter activity | 9.64E-05 | 3 | 753 |
Module489 | 8 | 67 | GO:0005215 | molecular_function | transporter activity | 0.000199217 | 3 | 959 |
Module489 | 8 | 68 | GO:0044446 | cellular_component | intracellular organelle part | 0.000586537 | 6 | 3055 |
Module489 | 8 | 69 | GO:0044422 | cellular_component | organelle part | 0.000592325 | 6 | 3060 |
Module489 | 8 | 70 | GO:0044281 | biological_process | small molecule metabolic process | 0.00066475 | 4 | 1482 |
Module489 | 8 | 71 | GO:0055114 | biological_process | oxidation-reduction process | 0.000687825 | 4 | 1495 |
Module489 | 8 | 72 | GO:0016310 | biological_process | phosphorylation | 0.000766419 | 4 | 1537 |
Module489 | 8 | 73 | GO:0016491 | molecular_function | oxidoreductase activity | 0.00090394 | 3 | 1587 |
Module489 | 8 | 74 | GO:0098796 | cellular_component | membrane protein complex | 0.001097272 | 3 | 414 |
Module489 | 8 | 75 | GO:1902494 | cellular_component | catalytic complex | 0.001233825 | 3 | 431 |
Module489 | 8 | 76 | GO:1901564 | biological_process | organonitrogen compound metabolic process | 0.001354517 | 4 | 1779 |
Module489 | 8 | 77 | GO:0006796 | biological_process | phosphate-containing compound metabolic process | 0.002091813 | 4 | 1990 |
Module489 | 8 | 78 | GO:0006793 | biological_process | phosphorus metabolic process | 0.002141035 | 4 | 2002 |
Module489 | 8 | 79 | GO:0015002 | molecular_function | heme-copper terminal oxidase activity | 0.002923441 | 1 | 16 |
Module489 | 8 | 80 | GO:0004129 | molecular_function | cytochrome-c oxidase activity | 0.002923441 | 1 | 16 |
Module489 | 8 | 81 | GO:0016675 | molecular_function | oxidoreductase activity, acting on a heme group of donors | 0.002923441 | 1 | 16 |
Module489 | 8 | 82 | GO:0016676 | molecular_function | oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor | 0.002923441 | 1 | 16 |
Module489 | 8 | 83 | GO:0006139 | biological_process | nucleobase-containing compound metabolic process | 0.005823508 | 4 | 2597 |
Module489 | 8 | 84 | GO:0016020 | cellular_component | membrane | 0.007951017 | 6 | 4716 |
Module489 | 8 | 85 | GO:0046483 | biological_process | heterocycle metabolic process | 0.008476518 | 4 | 2866 |
Module489 | 8 | 86 | GO:0006725 | biological_process | cellular aromatic compound metabolic process | 0.008969392 | 4 | 2909 |
Module489 | 8 | 87 | GO:1901360 | biological_process | organic cyclic compound metabolic process | 0.010067158 | 4 | 2999 |
Module489 | 8 | 88 | GO:0044444 | cellular_component | cytoplasmic part | 0.018167886 | 6 | 5412 |
Module489 | 8 | 89 | GO:0034641 | biological_process | cellular nitrogen compound metabolic process | 0.018885389 | 4 | 3545 |
Module489 | 8 | 90 | GO:0009741 | biological_process | response to brassinosteroid | 0.019878617 | 1 | 54 |
Module489 | 8 | 91 | GO:0044710 | biological_process | single-organism metabolic process | 0.024506673 | 4 | 3802 |
Module489 | 8 | 92 | GO:0006807 | biological_process | nitrogen compound metabolic process | 0.026599246 | 4 | 3887 |
Module489 | 8 | 93 | GO:0043234 | cellular_component | protein complex | 0.026993204 | 3 | 1283 |
Module489 | 8 | 94 | GO:0005737 | cellular_component | cytoplasm | 0.030504884 | 6 | 5900 |
Module489 | 8 | 95 | GO:0005747 | cellular_component | mitochondrial respiratory chain complex I | 0.033087314 | 1 | 59 |
Module489 | 8 | 96 | GO:0030964 | cellular_component | NADH dehydrogenase complex | 0.036400389 | 1 | 65 |
Module489 | 8 | 97 | GO:0045271 | cellular_component | respiratory chain complex I | 0.036400389 | 1 | 65 |
Module489 | 8 | 98 | GO:0043231 | cellular_component | intracellular membrane-bounded organelle | 0.03971031 | 6 | 6165 |
Module489 | 8 | 99 | GO:0043227 | cellular_component | membrane-bounded organelle | 0.039748989 | 6 | 6166 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
ccr2 | GRMZM2G048013 | 0.0401 |
ccr2 | GRMZM2G092988 | 0.0432 |
ccr2 | GRMZM2G106607 | 0.0471 |
ccr2 | GRMZM2G124791 | 0.0377 |
ccr2 | GRMZM2G171476 | 0.0761 |
GRMZM2G048013 | GRMZM2G124791 | 0.0352 |
GRMZM2G048013 | GRMZM2G165483 | 0.0363 |
GRMZM2G165483 | GRMZM2G451281 | 0.0404 |