Module491
This page contains information for Module491, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format ) is provided for downloding, which can be opened and viewed within the Cytoscape software . Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
The list of genes within the module (containing 8 genes) Click to Show / Hide Gene List
Maize Gene Symbol Moule No. Arabidopsis Homologue Arabidopsis Homologue Symbol Arabidopsis Homologue Name Arabidopsis Homologue Description Arabidopsis Homologue TF_Family
GRMZM2G065641 Module491 AT2G13840 AT2G13840 Polymerase/histidinol phosphatase-like
GRMZM2G077045 nactf64 Module491 AT1G25580 SOG1 SUPPRESSOR OF GAMMA RADIATION 1 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein NAC
GRMZM2G025671 Module491 AT3G03810 EDA30 embryo sac development arrest 30 O-fucosyltransferase family protein
GRMZM2G134625 Module491 AT1G06560 AT1G06560 NOL1/NOP2/sun family protein
GRMZM2G134694 Module491 AT4G00020 BRCA2(IV) BREAST CANCER 2 like 2A BREAST CANCER 2 like 2A
GRMZM2G362341 Module491
GRMZM2G380227 Module491 AT3G08760 ATSIK Protein kinase superfamily protein
GRMZM5G833032 mybr100 Module491 AT5G52660 AT5G52660 Homeodomain-like superfamily protein MYB-related
Gene Ontology enrichment analysis Click to Show / Hide Results
Module No. Number of genes within the module GO_Rank GO ID GO catogery GO term pValue Number of genes with the GO within the module Number of genes with the GO within the genome (background set)
Module491 8 1 GO:0003676 molecular_function nucleic acid binding 0.00551965 4 3117
Module491 8 2 GO:0003697 molecular_function single-stranded DNA binding 0.006385287 1 21
Module491 8 3 GO:0010197 biological_process polar nucleus fusion 0.008873386 1 20
Module491 8 4 GO:0000724 biological_process double-strand break repair via homologous recombination 0.008873386 1 20
Module491 8 5 GO:0000725 biological_process recombinational repair 0.008873386 1 20
Module491 8 6 GO:0009559 biological_process embryo sac central cell differentiation 0.008873386 1 20
Module491 8 7 GO:1901363 molecular_function heterocyclic compound binding 0.009433237 5 6456
Module491 8 8 GO:0097159 molecular_function organic cyclic compound binding 0.009469833 5 6461
Module491 8 9 GO:0000741 biological_process karyogamy 0.009757104 1 22
Module491 8 10 GO:0048284 biological_process organelle fusion 0.010640165 1 24
Module491 8 11 GO:0006997 biological_process nucleus organization 0.01152257 1 26
Module491 8 12 GO:0003677 molecular_function DNA binding 0.012777468 3 1891
Module491 8 13 GO:0006302 biological_process double-strand break repair 0.014165851 1 32
Module491 8 14 GO:0009561 biological_process megagametogenesis 0.020310607 1 46
Module491 8 15 GO:0006310 biological_process DNA recombination 0.029033439 1 66
Module491 8 16 GO:0009739 biological_process response to gibberellin 0.034668498 1 79
Module491 8 17 GO:0009553 biological_process embryo sac development 0.039415313 1 90
Module491 8 18 GO:0009751 biological_process response to salicylic acid 0.041136598 1 94
Module491 8 19 GO:0009723 biological_process response to ethylene 0.049277641 1 113
Module491 8 20 GO:0048868 biological_process pollen tube development 0.049277641 1 113
A development heatmap for the genes within the module (showing these genes' tissue-specific expression patterns)Click to Download the Heatmap
A subnetwork extracted for the genes witin module
All gene pairs of the subnetwork Click to Show / Hide Gene Pairs
Gene A Gene B Partial correlation coefficient
GRMZM2G065641 GRMZM2G380227 0.0355
nactf64 GRMZM2G025671 0.0354
nactf64 GRMZM2G134625 0.0418
nactf64 GRMZM2G134694 0.0496
nactf64 GRMZM2G362341 0.0453
nactf64 GRMZM2G380227 0.0383
GRMZM2G134694 mybr100 0.0392
A sif file of the subnetwork (This file conains the information of the subnetwork, which be opened using Cytoscape to produce a visualization of the subenetwork.)Click to Download the SIF file
Visualization of the subnetwork Click to Visualize the Subnetwork