This page contains information for Module511, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
GRMZM2G161450 | Module511 | AT3G26750 | AT3G26750 | ||||
GRMZM2G011743 | Module511 | AT4G00590 | AT4G00590 | N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein | |||
GRMZM2G142379 | Module511 | AT4G32750 | AT4G32750 | ||||
GRMZM2G176665 | Module511 | AT4G19400 | AT4G19400 | Profilin family protein | |||
GRMZM2G442489 | Module511 | AT3G49980 | AT3G49980 | F-box and associated interaction domains-containing protein | |||
GRMZM2G464515 | Module511 | ||||||
GRMZM2G473385 | Module511 | AT2G01460 | AT2G01460 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | |||
GRMZM5G879240 | Module511 | AT2G28520 | VHA-A1 | vacuolar proton ATPase A1 | vacuolar proton ATPase A1 |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module511 | 8 | 1 | GO:0070070 | biological_process | proton-transporting V-type ATPase complex assembly | 0.000445203 | 1 | 2 |
Module511 | 8 | 2 | GO:0012510 | cellular_component | trans-Golgi network transport vesicle membrane | 0.000568559 | 1 | 6 |
Module511 | 8 | 3 | GO:0030665 | cellular_component | clathrin-coated vesicle membrane | 0.000663318 | 1 | 7 |
Module511 | 8 | 4 | GO:0030140 | cellular_component | trans-Golgi network transport vesicle | 0.000852838 | 1 | 9 |
Module511 | 8 | 5 | GO:0070071 | biological_process | proton-transporting two-sector ATPase complex assembly | 0.000890274 | 1 | 4 |
Module511 | 8 | 6 | GO:0004849 | molecular_function | uridine kinase activity | 0.001218769 | 1 | 4 |
Module511 | 8 | 7 | GO:0030136 | cellular_component | clathrin-coated vesicle | 0.001231877 | 1 | 13 |
Module511 | 8 | 8 | GO:0006222 | biological_process | UMP biosynthetic process | 0.001557632 | 1 | 7 |
Module511 | 8 | 9 | GO:0009173 | biological_process | pyrimidine ribonucleoside monophosphate metabolic process | 0.001557632 | 1 | 7 |
Module511 | 8 | 10 | GO:0009174 | biological_process | pyrimidine ribonucleoside monophosphate biosynthetic process | 0.001557632 | 1 | 7 |
Module511 | 8 | 11 | GO:0046049 | biological_process | UMP metabolic process | 0.001557632 | 1 | 7 |
Module511 | 8 | 12 | GO:0030658 | cellular_component | transport vesicle membrane | 0.001705676 | 1 | 18 |
Module511 | 8 | 13 | GO:0033179 | cellular_component | proton-transporting V-type ATPase, V0 domain | 0.001800436 | 1 | 19 |
Module511 | 8 | 14 | GO:0009129 | biological_process | pyrimidine nucleoside monophosphate metabolic process | 0.002002373 | 1 | 9 |
Module511 | 8 | 15 | GO:0009130 | biological_process | pyrimidine nucleoside monophosphate biosynthetic process | 0.002002373 | 1 | 9 |
Module511 | 8 | 16 | GO:0030660 | cellular_component | Golgi-associated vesicle membrane | 0.002274235 | 1 | 24 |
Module511 | 8 | 17 | GO:0030133 | cellular_component | transport vesicle | 0.002368995 | 1 | 25 |
Module511 | 8 | 18 | GO:0019206 | molecular_function | nucleoside kinase activity | 0.002436349 | 1 | 8 |
Module511 | 8 | 19 | GO:0005798 | cellular_component | Golgi-associated vesicle | 0.002748034 | 1 | 29 |
Module511 | 8 | 20 | GO:0033176 | cellular_component | proton-transporting V-type ATPase complex | 0.003127073 | 1 | 33 |
Module511 | 8 | 21 | GO:0033177 | cellular_component | proton-transporting two-sector ATPase complex, proton-transporting domain | 0.003221833 | 1 | 34 |
Module511 | 8 | 22 | GO:0030662 | cellular_component | coated vesicle membrane | 0.003506112 | 1 | 37 |
Module511 | 8 | 23 | GO:0030659 | cellular_component | cytoplasmic vesicle membrane | 0.003695632 | 1 | 39 |
Module511 | 8 | 24 | GO:0044433 | cellular_component | cytoplasmic vesicle part | 0.003695632 | 1 | 39 |
Module511 | 8 | 25 | GO:0012506 | cellular_component | vesicle membrane | 0.003790391 | 1 | 40 |
Module511 | 8 | 26 | GO:0046132 | biological_process | pyrimidine ribonucleoside biosynthetic process | 0.00400207 | 1 | 18 |
Module511 | 8 | 27 | GO:0046134 | biological_process | pyrimidine nucleoside biosynthetic process | 0.00400207 | 1 | 18 |
Module511 | 8 | 28 | GO:0009220 | biological_process | pyrimidine ribonucleotide biosynthetic process | 0.004224094 | 1 | 19 |
Module511 | 8 | 29 | GO:0009218 | biological_process | pyrimidine ribonucleotide metabolic process | 0.004224094 | 1 | 19 |
Module511 | 8 | 30 | GO:0030135 | cellular_component | coated vesicle | 0.00426419 | 1 | 45 |
Module511 | 8 | 31 | GO:0046131 | biological_process | pyrimidine ribonucleoside metabolic process | 0.005333717 | 1 | 24 |
Module511 | 8 | 32 | GO:0006213 | biological_process | pyrimidine nucleoside metabolic process | 0.005333717 | 1 | 24 |
Module511 | 8 | 33 | GO:0000139 | cellular_component | Golgi membrane | 0.005875107 | 1 | 62 |
Module511 | 8 | 34 | GO:0006221 | biological_process | pyrimidine nucleotide biosynthetic process | 0.006885804 | 1 | 31 |
Module511 | 8 | 35 | GO:0006220 | biological_process | pyrimidine nucleotide metabolic process | 0.007107399 | 1 | 32 |
Module511 | 8 | 36 | GO:0016469 | cellular_component | proton-transporting two-sector ATPase complex | 0.007296503 | 1 | 77 |
Module511 | 8 | 37 | GO:0031410 | cellular_component | cytoplasmic vesicle | 0.008054582 | 1 | 85 |
Module511 | 8 | 38 | GO:0016023 | cellular_component | cytoplasmic, membrane-bounded vesicle | 0.008054582 | 1 | 85 |
Module511 | 8 | 39 | GO:0031988 | cellular_component | membrane-bounded vesicle | 0.008338861 | 1 | 88 |
Module511 | 8 | 40 | GO:0031982 | cellular_component | vesicle | 0.00890742 | 1 | 94 |
Module511 | 8 | 41 | GO:0072528 | biological_process | pyrimidine-containing compound biosynthetic process | 0.009763967 | 1 | 44 |
Module511 | 8 | 42 | GO:0090662 | biological_process | ATP hydrolysis coupled transmembrane transport | 0.010427367 | 1 | 47 |
Module511 | 8 | 43 | GO:0015991 | biological_process | ATP hydrolysis coupled proton transport | 0.010427367 | 1 | 47 |
Module511 | 8 | 44 | GO:0015988 | biological_process | energy coupled proton transmembrane transport, against electrochemical gradient | 0.010427367 | 1 | 47 |
Module511 | 8 | 45 | GO:0072527 | biological_process | pyrimidine-containing compound metabolic process | 0.011753279 | 1 | 53 |
Module511 | 8 | 46 | GO:0019205 | molecular_function | nucleobase-containing compound kinase activity | 0.012134306 | 1 | 40 |
Module511 | 8 | 47 | GO:0005802 | cellular_component | trans-Golgi network | 0.014593007 | 1 | 154 |
Module511 | 8 | 48 | GO:0098791 | cellular_component | Golgi subcompartment | 0.015919644 | 1 | 168 |
Module511 | 8 | 49 | GO:1902600 | biological_process | hydrogen ion transmembrane transport | 0.016604824 | 1 | 75 |
Module511 | 8 | 50 | GO:0005768 | cellular_component | endosome | 0.016677722 | 1 | 176 |
Module511 | 8 | 51 | GO:0009156 | biological_process | ribonucleoside monophosphate biosynthetic process | 0.017485214 | 1 | 79 |
Module511 | 8 | 52 | GO:0009124 | biological_process | nucleoside monophosphate biosynthetic process | 0.018145161 | 1 | 82 |
Module511 | 8 | 53 | GO:0030029 | biological_process | actin filament-based process | 0.020781995 | 1 | 94 |
Module511 | 8 | 54 | GO:0030036 | biological_process | actin cytoskeleton organization | 0.020781995 | 1 | 94 |
Module511 | 8 | 55 | GO:0042455 | biological_process | ribonucleoside biosynthetic process | 0.021440465 | 1 | 97 |
Module511 | 8 | 56 | GO:0009163 | biological_process | nucleoside biosynthetic process | 0.021440465 | 1 | 97 |
Module511 | 8 | 57 | GO:0006818 | biological_process | hydrogen transport | 0.021440465 | 1 | 97 |
Module511 | 8 | 58 | GO:0015992 | biological_process | proton transport | 0.021440465 | 1 | 97 |
Module511 | 8 | 59 | GO:0044431 | cellular_component | Golgi apparatus part | 0.02179475 | 1 | 230 |
Module511 | 8 | 60 | GO:0009260 | biological_process | ribonucleotide biosynthetic process | 0.022317965 | 1 | 101 |
Module511 | 8 | 61 | GO:0046390 | biological_process | ribose phosphate biosynthetic process | 0.022317965 | 1 | 101 |
Module511 | 8 | 62 | GO:1901659 | biological_process | glycosyl compound biosynthetic process | 0.024509421 | 1 | 111 |
Module511 | 8 | 63 | GO:0016043 | biological_process | cellular component organization | 0.026223497 | 2 | 1303 |
Module511 | 8 | 64 | GO:0003779 | molecular_function | actin binding | 0.028030526 | 1 | 93 |
Module511 | 8 | 65 | GO:0009165 | biological_process | nucleotide biosynthetic process | 0.030409991 | 1 | 138 |
Module511 | 8 | 66 | GO:1901293 | biological_process | nucleoside phosphate biosynthetic process | 0.03128212 | 1 | 142 |
Module511 | 8 | 67 | GO:0071840 | biological_process | cellular component organization or biogenesis | 0.031585959 | 2 | 1435 |
Module511 | 8 | 68 | GO:0007010 | biological_process | cytoskeleton organization | 0.035200231 | 1 | 160 |
Module511 | 8 | 69 | GO:0043623 | biological_process | cellular protein complex assembly | 0.035417594 | 1 | 161 |
Module511 | 8 | 70 | GO:0098662 | biological_process | inorganic cation transmembrane transport | 0.039107763 | 1 | 178 |
Module511 | 8 | 71 | GO:0098796 | cellular_component | membrane protein complex | 0.039230551 | 1 | 414 |
Module511 | 8 | 72 | GO:0098655 | biological_process | cation transmembrane transport | 0.039324538 | 1 | 179 |
Module511 | 8 | 73 | GO:0015672 | biological_process | monovalent inorganic cation transport | 0.039541281 | 1 | 180 |
Module511 | 8 | 74 | GO:0008092 | molecular_function | cytoskeletal protein binding | 0.040186662 | 1 | 134 |
Module511 | 8 | 75 | GO:0098660 | biological_process | inorganic ion transmembrane transport | 0.040624505 | 1 | 185 |
Module511 | 8 | 76 | GO:0015078 | molecular_function | hydrogen ion transmembrane transporter activity | 0.042544345 | 1 | 142 |
Module511 | 8 | 77 | GO:0009161 | biological_process | ribonucleoside monophosphate metabolic process | 0.044301374 | 1 | 202 |
Module511 | 8 | 78 | GO:0009123 | biological_process | nucleoside monophosphate metabolic process | 0.044949257 | 1 | 205 |
Module511 | 8 | 79 | GO:0044763 | biological_process | single-organism cellular process | 0.046310613 | 3 | 4840 |
Module511 | 8 | 80 | GO:0098805 | cellular_component | whole membrane | 0.047948451 | 1 | 506 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
GRMZM2G161450 | GRMZM2G011743 | 0.0366 |
GRMZM2G161450 | GRMZM2G142379 | 0.043 |
GRMZM2G161450 | GRMZM2G176665 | 0.0472 |
GRMZM2G161450 | GRMZM2G473385 | 0.0366 |
GRMZM2G142379 | GRMZM2G442489 | 0.036 |
GRMZM2G442489 | GRMZM2G464515 | 0.0353 |
GRMZM2G473385 | GRMZM5G879240 | 0.0371 |