This page contains information for Module520, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
AC194341.4_FG002 | Module520 | AT4G29480 | AT4G29480 | Mitochondrial ATP synthase subunit G protein | |||
AC214350.3_FG007 | Module520 | AT5G13430 | AT5G13430 | Ubiquinol-cytochrome C reductase iron-sulfur subunit | |||
GRMZM2G047512 | Module520 | AT1G72020 | AT1G72020 | ||||
GRMZM2G004172 | Module520 | AT2G33220 | AT2G33220 | GRIM-19 protein | |||
GRMZM2G070716 | Module520 | AT2G33220 | AT2G33220 | GRIM-19 protein | |||
GRMZM2G122481 | Module520 | AT2G47380 | AT2G47380 | Cytochrome c oxidase subunit Vc family protein | |||
GRMZM2G134747 | Module520 | AT3G23490 | CYN | cyanase | cyanase |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module520 | 7 | 1 | GO:0044455 | cellular_component | mitochondrial membrane part | 2.81E-09 | 5 | 146 |
Module520 | 7 | 2 | GO:0005743 | cellular_component | mitochondrial inner membrane | 4.90E-09 | 5 | 163 |
Module520 | 7 | 3 | GO:0031966 | cellular_component | mitochondrial membrane | 1.21E-08 | 5 | 195 |
Module520 | 7 | 4 | GO:0019866 | cellular_component | organelle inner membrane | 1.72E-08 | 5 | 209 |
Module520 | 7 | 5 | GO:0005740 | cellular_component | mitochondrial envelope | 1.84E-08 | 5 | 212 |
Module520 | 7 | 6 | GO:0044429 | cellular_component | mitochondrial part | 5.04E-08 | 5 | 259 |
Module520 | 7 | 7 | GO:0005746 | cellular_component | mitochondrial respiratory chain | 8.37E-08 | 4 | 93 |
Module520 | 7 | 8 | GO:0070469 | cellular_component | respiratory chain | 1.65E-07 | 4 | 110 |
Module520 | 7 | 9 | GO:0098800 | cellular_component | inner mitochondrial membrane protein complex | 2.19E-07 | 4 | 118 |
Module520 | 7 | 10 | GO:0098798 | cellular_component | mitochondrial protein complex | 2.85E-07 | 4 | 126 |
Module520 | 7 | 11 | GO:0098803 | cellular_component | respiratory chain complex | 1.30E-05 | 3 | 93 |
Module520 | 7 | 12 | GO:0031090 | cellular_component | organelle membrane | 1.63E-05 | 5 | 826 |
Module520 | 7 | 13 | GO:0031967 | cellular_component | organelle envelope | 1.81E-05 | 5 | 844 |
Module520 | 7 | 14 | GO:0031975 | cellular_component | envelope | 1.91E-05 | 5 | 853 |
Module520 | 7 | 15 | GO:0005739 | cellular_component | mitochondrion | 2.72E-05 | 5 | 916 |
Module520 | 7 | 16 | GO:0098796 | cellular_component | membrane protein complex | 3.29E-05 | 4 | 414 |
Module520 | 7 | 17 | GO:1990204 | cellular_component | oxidoreductase complex | 3.72E-05 | 3 | 132 |
Module520 | 7 | 18 | GO:0015078 | molecular_function | hydrogen ion transmembrane transporter activity | 0.000221961 | 2 | 142 |
Module520 | 7 | 19 | GO:0015077 | molecular_function | monovalent inorganic cation transmembrane transporter activity | 0.000444577 | 2 | 201 |
Module520 | 7 | 20 | GO:0005747 | cellular_component | mitochondrial respiratory chain complex I | 0.000454356 | 2 | 59 |
Module520 | 7 | 21 | GO:0030964 | cellular_component | NADH dehydrogenase complex | 0.000551505 | 2 | 65 |
Module520 | 7 | 22 | GO:0045271 | cellular_component | respiratory chain complex I | 0.000551505 | 2 | 65 |
Module520 | 7 | 23 | GO:0022890 | molecular_function | inorganic cation transmembrane transporter activity | 0.00087962 | 2 | 283 |
Module520 | 7 | 24 | GO:0044425 | cellular_component | membrane part | 0.000948862 | 5 | 1895 |
Module520 | 7 | 25 | GO:1902494 | cellular_component | catalytic complex | 0.001233825 | 3 | 431 |
Module520 | 7 | 26 | GO:0008324 | molecular_function | cation transmembrane transporter activity | 0.001499447 | 2 | 370 |
Module520 | 7 | 27 | GO:0008121 | molecular_function | ubiquinol-cytochrome-c reductase activity | 0.002193115 | 1 | 12 |
Module520 | 7 | 28 | GO:0016681 | molecular_function | oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor | 0.002193115 | 1 | 12 |
Module520 | 7 | 29 | GO:0009793 | biological_process | embryo development ending in seed dormancy | 0.00229939 | 2 | 208 |
Module520 | 7 | 30 | GO:0043234 | cellular_component | protein complex | 0.002662525 | 4 | 1283 |
Module520 | 7 | 31 | GO:0015075 | molecular_function | ion transmembrane transporter activity | 0.002768814 | 2 | 504 |
Module520 | 7 | 32 | GO:0009790 | biological_process | embryo development | 0.004156184 | 2 | 281 |
Module520 | 7 | 33 | GO:0048316 | biological_process | seed development | 0.004214399 | 2 | 283 |
Module520 | 7 | 34 | GO:0022891 | molecular_function | substrate-specific transmembrane transporter activity | 0.004238127 | 2 | 625 |
Module520 | 7 | 35 | GO:0016840 | molecular_function | carbon-nitrogen lyase activity | 0.004747694 | 1 | 26 |
Module520 | 7 | 36 | GO:0010154 | biological_process | fruit development | 0.004786691 | 2 | 302 |
Module520 | 7 | 37 | GO:0022892 | molecular_function | substrate-specific transporter activity | 0.005270762 | 2 | 698 |
Module520 | 7 | 38 | GO:0000276 | cellular_component | mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) | 0.005673476 | 1 | 10 |
Module520 | 7 | 39 | GO:0051537 | molecular_function | 2 iron, 2 sulfur cluster binding | 0.006023347 | 1 | 33 |
Module520 | 7 | 40 | GO:0022857 | molecular_function | transmembrane transporter activity | 0.006120653 | 2 | 753 |
Module520 | 7 | 41 | GO:0016679 | molecular_function | oxidoreductase activity, acting on diphenols and related substances as donors | 0.00693386 | 1 | 38 |
Module520 | 7 | 42 | GO:0045263 | cellular_component | proton-transporting ATP synthase complex, coupling factor F(o) | 0.008500139 | 1 | 15 |
Module520 | 7 | 43 | GO:0044446 | cellular_component | intracellular organelle part | 0.009238054 | 5 | 3055 |
Module520 | 7 | 44 | GO:0044422 | cellular_component | organelle part | 0.009309102 | 5 | 3060 |
Module520 | 7 | 45 | GO:0005215 | molecular_function | transporter activity | 0.009844688 | 2 | 959 |
Module520 | 7 | 46 | GO:0045275 | cellular_component | respiratory chain complex III | 0.01019292 | 1 | 18 |
Module520 | 7 | 47 | GO:1902495 | cellular_component | transmembrane transporter complex | 0.01019292 | 1 | 18 |
Module520 | 7 | 48 | GO:0005750 | cellular_component | mitochondrial respiratory chain complex III | 0.01019292 | 1 | 18 |
Module520 | 7 | 49 | GO:1990351 | cellular_component | transporter complex | 0.01019292 | 1 | 18 |
Module520 | 7 | 50 | GO:0005753 | cellular_component | mitochondrial proton-transporting ATP synthase complex | 0.013008871 | 1 | 23 |
Module520 | 7 | 51 | GO:0032991 | cellular_component | macromolecular complex | 0.013518351 | 4 | 1984 |
Module520 | 7 | 52 | GO:0015985 | biological_process | energy coupled proton transport, down electrochemical gradient | 0.01438878 | 1 | 39 |
Module520 | 7 | 53 | GO:0015986 | biological_process | ATP synthesis coupled proton transport | 0.01438878 | 1 | 39 |
Module520 | 7 | 54 | GO:0070069 | cellular_component | cytochrome complex | 0.014695234 | 1 | 26 |
Module520 | 7 | 55 | GO:0044444 | cellular_component | cytoplasmic part | 0.018167886 | 6 | 5412 |
Module520 | 7 | 56 | GO:0006754 | biological_process | ATP biosynthetic process | 0.018417059 | 1 | 50 |
Module520 | 7 | 57 | GO:0033177 | cellular_component | proton-transporting two-sector ATPase complex, proton-transporting domain | 0.019180468 | 1 | 34 |
Module520 | 7 | 58 | GO:0061458 | biological_process | reproductive system development | 0.019380269 | 2 | 622 |
Module520 | 7 | 59 | GO:0048608 | biological_process | reproductive structure development | 0.019380269 | 2 | 622 |
Module520 | 7 | 60 | GO:0009145 | biological_process | purine nucleoside triphosphate biosynthetic process | 0.021703117 | 1 | 59 |
Module520 | 7 | 61 | GO:0009206 | biological_process | purine ribonucleoside triphosphate biosynthetic process | 0.021703117 | 1 | 59 |
Module520 | 7 | 62 | GO:0045259 | cellular_component | proton-transporting ATP synthase complex | 0.021975089 | 1 | 39 |
Module520 | 7 | 63 | GO:0009201 | biological_process | ribonucleoside triphosphate biosynthetic process | 0.022432155 | 1 | 61 |
Module520 | 7 | 64 | GO:0051540 | molecular_function | metal cluster binding | 0.022687896 | 1 | 125 |
Module520 | 7 | 65 | GO:0051536 | molecular_function | iron-sulfur cluster binding | 0.022687896 | 1 | 125 |
Module520 | 7 | 66 | GO:0009142 | biological_process | nucleoside triphosphate biosynthetic process | 0.023160759 | 1 | 63 |
Module520 | 7 | 67 | GO:0009168 | biological_process | purine ribonucleoside monophosphate biosynthetic process | 0.025707452 | 1 | 70 |
Module520 | 7 | 68 | GO:0009127 | biological_process | purine nucleoside monophosphate biosynthetic process | 0.025707452 | 1 | 70 |
Module520 | 7 | 69 | GO:0044270 | biological_process | cellular nitrogen compound catabolic process | 0.025707452 | 1 | 70 |
Module520 | 7 | 70 | GO:1902600 | biological_process | hydrogen ion transmembrane transport | 0.027523265 | 1 | 75 |
Module520 | 7 | 71 | GO:0003006 | biological_process | developmental process involved in reproduction | 0.027641247 | 2 | 750 |
Module520 | 7 | 72 | GO:0009156 | biological_process | ribonucleoside monophosphate biosynthetic process | 0.028973965 | 1 | 79 |
Module520 | 7 | 73 | GO:0044702 | biological_process | single organism reproductive process | 0.029332137 | 2 | 774 |
Module520 | 7 | 74 | GO:0009124 | biological_process | nucleoside monophosphate biosynthetic process | 0.030060853 | 1 | 82 |
Module520 | 7 | 75 | GO:0005737 | cellular_component | cytoplasm | 0.030504884 | 6 | 5900 |
Module520 | 7 | 76 | GO:0046129 | biological_process | purine ribonucleoside biosynthetic process | 0.031508523 | 1 | 86 |
Module520 | 7 | 77 | GO:0042451 | biological_process | purine nucleoside biosynthetic process | 0.031508523 | 1 | 86 |
Module520 | 7 | 78 | GO:0009791 | biological_process | post-embryonic development | 0.032097979 | 2 | 812 |
Module520 | 7 | 79 | GO:0009152 | biological_process | purine ribonucleotide biosynthetic process | 0.033315679 | 1 | 91 |
Module520 | 7 | 80 | GO:0042802 | molecular_function | identical protein binding | 0.033812638 | 1 | 187 |
Module520 | 7 | 81 | GO:0006164 | biological_process | purine nucleotide biosynthetic process | 0.034759461 | 1 | 95 |
Module520 | 7 | 82 | GO:0042455 | biological_process | ribonucleoside biosynthetic process | 0.035480705 | 1 | 97 |
Module520 | 7 | 83 | GO:0009163 | biological_process | nucleoside biosynthetic process | 0.035480705 | 1 | 97 |
Module520 | 7 | 84 | GO:0006818 | biological_process | hydrogen transport | 0.035480705 | 1 | 97 |
Module520 | 7 | 85 | GO:0015992 | biological_process | proton transport | 0.035480705 | 1 | 97 |
Module520 | 7 | 86 | GO:0009260 | biological_process | ribonucleotide biosynthetic process | 0.036921899 | 1 | 101 |
Module520 | 7 | 87 | GO:0046390 | biological_process | ribose phosphate biosynthetic process | 0.036921899 | 1 | 101 |
Module520 | 7 | 88 | GO:0044699 | biological_process | single-organism process | 0.038197633 | 5 | 7015 |
Module520 | 7 | 89 | GO:0022414 | biological_process | reproductive process | 0.040288155 | 2 | 917 |
Module520 | 7 | 90 | GO:1901659 | biological_process | glycosyl compound biosynthetic process | 0.040517348 | 1 | 111 |
Module520 | 7 | 91 | GO:0000003 | biological_process | reproduction | 0.040697682 | 2 | 922 |
Module520 | 7 | 92 | GO:1901565 | biological_process | organonitrogen compound catabolic process | 0.041235148 | 1 | 113 |
Module520 | 7 | 93 | GO:0072522 | biological_process | purine-containing compound biosynthetic process | 0.041235148 | 1 | 113 |
Module520 | 7 | 94 | GO:0048731 | biological_process | system development | 0.042939009 | 2 | 949 |
Module520 | 7 | 95 | GO:0016469 | cellular_component | proton-transporting two-sector ATPase complex | 0.042998164 | 1 | 77 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
AC194341.4_FG002 | GRMZM2G047512 | 0.0393 |
AC214350.3_FG007 | GRMZM2G047512 | 0.0387 |
GRMZM2G047512 | GRMZM2G004172 | 0.0363 |
GRMZM2G047512 | GRMZM2G070716 | 0.0353 |
GRMZM2G047512 | GRMZM2G122481 | 0.0369 |
GRMZM2G004172 | GRMZM2G070716 | 0.0465 |
GRMZM2G004172 | GRMZM2G122481 | 0.0364 |
GRMZM2G070716 | GRMZM2G134747 | 0.0414 |