This page contains information for Module550, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
AC233866.1_FG006 | elfa1 | Module550 | AT1G07920 | AT1G07920 | GTP binding Elongation factor Tu family protein | ||
GRMZM2G110509 | Module550 | AT1G07920 | AT1G07920 | GTP binding Elongation factor Tu family protein | |||
GRMZM2G149768 | elfa2 | Module550 | AT1G07920 | AT1G07920 | GTP binding Elongation factor Tu family protein | ||
GRMZM2G001327 | Module550 | AT1G07920 | AT1G07920 | GTP binding Elongation factor Tu family protein | |||
GRMZM2G151193 | Module550 | AT1G07920 | AT1G07920 | GTP binding Elongation factor Tu family protein | |||
GRMZM2G154218 | elfa3 | Module550 | AT1G07920 | AT1G07920 | GTP binding Elongation factor Tu family protein | ||
GRMZM2G066460 | arpp0 | Module550 | AT2G40010 | AT2G40010 | Ribosomal protein L10 family protein |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module550 | 7 | 1 | GO:0006414 | biological_process | translational elongation | 3.89E-17 | 7 | 64 |
Module550 | 7 | 2 | GO:0003746 | molecular_function | translation elongation factor activity | 1.58E-15 | 6 | 43 |
Module550 | 7 | 3 | GO:0003924 | molecular_function | GTPase activity | 1.46E-12 | 6 | 129 |
Module550 | 7 | 4 | GO:0008135 | molecular_function | translation factor activity, RNA binding | 2.41E-12 | 6 | 140 |
Module550 | 7 | 5 | GO:0046686 | biological_process | response to cadmium ion | 3.37E-11 | 7 | 433 |
Module550 | 7 | 6 | GO:0010038 | biological_process | response to metal ion | 1.21E-10 | 7 | 519 |
Module550 | 7 | 7 | GO:0032561 | molecular_function | guanyl ribonucleotide binding | 1.30E-10 | 6 | 270 |
Module550 | 7 | 8 | GO:0005525 | molecular_function | GTP binding | 1.30E-10 | 6 | 270 |
Module550 | 7 | 9 | GO:0019001 | molecular_function | guanyl nucleotide binding | 1.33E-10 | 6 | 271 |
Module550 | 7 | 10 | GO:0005730 | cellular_component | nucleolus | 2.16E-10 | 7 | 442 |
Module550 | 7 | 11 | GO:0031981 | cellular_component | nuclear lumen | 1.88E-09 | 7 | 601 |
Module550 | 7 | 12 | GO:0006412 | biological_process | translation | 2.14E-09 | 7 | 781 |
Module550 | 7 | 13 | GO:0043043 | biological_process | peptide biosynthetic process | 2.30E-09 | 7 | 789 |
Module550 | 7 | 14 | GO:0006518 | biological_process | peptide metabolic process | 2.81E-09 | 7 | 812 |
Module550 | 7 | 15 | GO:0043604 | biological_process | amide biosynthetic process | 3.07E-09 | 7 | 822 |
Module550 | 7 | 16 | GO:0010035 | biological_process | response to inorganic substance | 3.26E-09 | 7 | 829 |
Module550 | 7 | 17 | GO:0070013 | cellular_component | intracellular organelle lumen | 3.87E-09 | 7 | 666 |
Module550 | 7 | 18 | GO:0043233 | cellular_component | organelle lumen | 3.87E-09 | 7 | 666 |
Module550 | 7 | 19 | GO:0031974 | cellular_component | membrane-enclosed lumen | 4.21E-09 | 7 | 674 |
Module550 | 7 | 20 | GO:0043603 | biological_process | cellular amide metabolic process | 4.46E-09 | 7 | 867 |
Module550 | 7 | 21 | GO:0044428 | cellular_component | nuclear part | 7.97E-09 | 7 | 738 |
Module550 | 7 | 22 | GO:0003723 | molecular_function | RNA binding | 1.77E-08 | 6 | 611 |
Module550 | 7 | 23 | GO:0017111 | molecular_function | nucleoside-triphosphatase activity | 7.11E-08 | 6 | 771 |
Module550 | 7 | 24 | GO:1901566 | biological_process | organonitrogen compound biosynthetic process | 8.30E-08 | 7 | 1315 |
Module550 | 7 | 25 | GO:0016462 | molecular_function | pyrophosphatase activity | 9.98E-08 | 6 | 816 |
Module550 | 7 | 26 | GO:0016818 | molecular_function | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 1.19E-07 | 6 | 840 |
Module550 | 7 | 27 | GO:0016817 | molecular_function | hydrolase activity, acting on acid anhydrides | 1.36E-07 | 6 | 859 |
Module550 | 7 | 28 | GO:0042221 | biological_process | response to chemical | 4.65E-07 | 7 | 1681 |
Module550 | 7 | 29 | GO:0043228 | cellular_component | non-membrane-bounded organelle | 5.06E-07 | 7 | 1333 |
Module550 | 7 | 30 | GO:0043232 | cellular_component | intracellular non-membrane-bounded organelle | 5.06E-07 | 7 | 1333 |
Module550 | 7 | 31 | GO:1901564 | biological_process | organonitrogen compound metabolic process | 6.92E-07 | 7 | 1779 |
Module550 | 7 | 32 | GO:0005773 | cellular_component | vacuole | 1.61E-06 | 6 | 838 |
Module550 | 7 | 33 | GO:0005739 | cellular_component | mitochondrion | 2.73E-06 | 6 | 916 |
Module550 | 7 | 34 | GO:0034645 | biological_process | cellular macromolecule biosynthetic process | 7.66E-06 | 7 | 2507 |
Module550 | 7 | 35 | GO:0010467 | biological_process | gene expression | 7.77E-06 | 7 | 2512 |
Module550 | 7 | 36 | GO:0044271 | biological_process | cellular nitrogen compound biosynthetic process | 8.08E-06 | 7 | 2526 |
Module550 | 7 | 37 | GO:0009059 | biological_process | macromolecule biosynthetic process | 8.12E-06 | 7 | 2528 |
Module550 | 7 | 38 | GO:0009507 | cellular_component | chloroplast | 9.73E-06 | 7 | 2032 |
Module550 | 7 | 39 | GO:0005886 | cellular_component | plasma membrane | 1.05E-05 | 7 | 2055 |
Module550 | 7 | 40 | GO:0009536 | cellular_component | plastid | 1.40E-05 | 7 | 2141 |
Module550 | 7 | 41 | GO:0044267 | biological_process | cellular protein metabolic process | 1.59E-05 | 7 | 2783 |
Module550 | 7 | 42 | GO:0005634 | cellular_component | nucleus | 3.34E-05 | 7 | 2423 |
Module550 | 7 | 43 | GO:0071944 | cellular_component | cell periphery | 3.66E-05 | 7 | 2455 |
Module550 | 7 | 44 | GO:0019538 | biological_process | protein metabolic process | 4.63E-05 | 7 | 3241 |
Module550 | 7 | 45 | GO:0005774 | cellular_component | vacuolar membrane | 4.94E-05 | 4 | 373 |
Module550 | 7 | 46 | GO:0044437 | cellular_component | vacuolar part | 5.20E-05 | 4 | 378 |
Module550 | 7 | 47 | GO:0035639 | molecular_function | purine ribonucleoside triphosphate binding | 7.21E-05 | 6 | 2478 |
Module550 | 7 | 48 | GO:0050896 | biological_process | response to stimulus | 8.39E-05 | 7 | 3528 |
Module550 | 7 | 49 | GO:0032550 | molecular_function | purine ribonucleoside binding | 8.40E-05 | 6 | 2544 |
Module550 | 7 | 50 | GO:0032555 | molecular_function | purine ribonucleotide binding | 8.40E-05 | 6 | 2544 |
Module550 | 7 | 51 | GO:0001883 | molecular_function | purine nucleoside binding | 8.40E-05 | 6 | 2544 |
Module550 | 7 | 52 | GO:0032549 | molecular_function | ribonucleoside binding | 8.54E-05 | 6 | 2551 |
Module550 | 7 | 53 | GO:0017076 | molecular_function | purine nucleotide binding | 8.56E-05 | 6 | 2552 |
Module550 | 7 | 54 | GO:0001882 | molecular_function | nucleoside binding | 8.56E-05 | 6 | 2552 |
Module550 | 7 | 55 | GO:0034641 | biological_process | cellular nitrogen compound metabolic process | 8.68E-05 | 7 | 3545 |
Module550 | 7 | 56 | GO:0044249 | biological_process | cellular biosynthetic process | 8.70E-05 | 7 | 3546 |
Module550 | 7 | 57 | GO:0032553 | molecular_function | ribonucleotide binding | 9.19E-05 | 6 | 2583 |
Module550 | 7 | 58 | GO:0097367 | molecular_function | carbohydrate derivative binding | 9.74E-05 | 6 | 2609 |
Module550 | 7 | 59 | GO:1901576 | biological_process | organic substance biosynthetic process | 9.78E-05 | 7 | 3606 |
Module550 | 7 | 60 | GO:0009058 | biological_process | biosynthetic process | 0.000131111 | 7 | 3760 |
Module550 | 7 | 61 | GO:0016787 | molecular_function | hydrolase activity | 0.000155976 | 6 | 2828 |
Module550 | 7 | 62 | GO:0098805 | cellular_component | whole membrane | 0.000162841 | 4 | 506 |
Module550 | 7 | 63 | GO:0006807 | biological_process | nitrogen compound metabolic process | 0.000165464 | 7 | 3887 |
Module550 | 7 | 64 | GO:0044446 | cellular_component | intracellular organelle part | 0.00016956 | 7 | 3055 |
Module550 | 7 | 65 | GO:0044422 | cellular_component | organelle part | 0.000171514 | 7 | 3060 |
Module550 | 7 | 66 | GO:0009506 | cellular_component | plasmodesma | 0.000181084 | 4 | 520 |
Module550 | 7 | 67 | GO:0055044 | cellular_component | symplast | 0.000181084 | 4 | 520 |
Module550 | 7 | 68 | GO:0005911 | cellular_component | cell-cell junction | 0.000181084 | 4 | 520 |
Module550 | 7 | 69 | GO:0030054 | cellular_component | cell junction | 0.000181084 | 4 | 520 |
Module550 | 7 | 70 | GO:0043168 | molecular_function | anion binding | 0.000219581 | 6 | 2999 |
Module550 | 7 | 71 | GO:0003676 | molecular_function | nucleic acid binding | 0.000274822 | 6 | 3117 |
Module550 | 7 | 72 | GO:0098588 | cellular_component | bounding membrane of organelle | 0.000338396 | 4 | 611 |
Module550 | 7 | 73 | GO:1901265 | molecular_function | nucleoside phosphate binding | 0.000431427 | 6 | 3369 |
Module550 | 7 | 74 | GO:0000166 | molecular_function | nucleotide binding | 0.000431427 | 6 | 3369 |
Module550 | 7 | 75 | GO:0036094 | molecular_function | small molecule binding | 0.000495852 | 6 | 3451 |
Module550 | 7 | 76 | GO:0005829 | cellular_component | cytosol | 0.000514971 | 5 | 1321 |
Module550 | 7 | 77 | GO:0043167 | molecular_function | ion binding | 0.000711962 | 7 | 5827 |
Module550 | 7 | 78 | GO:0044260 | biological_process | cellular macromolecule metabolic process | 0.000913893 | 7 | 4961 |
Module550 | 7 | 79 | GO:0031090 | cellular_component | organelle membrane | 0.001076331 | 4 | 826 |
Module550 | 7 | 80 | GO:0043170 | biological_process | macromolecule metabolic process | 0.001839326 | 7 | 5482 |
Module550 | 7 | 81 | GO:0016020 | cellular_component | membrane | 0.003550705 | 7 | 4716 |
Module550 | 7 | 82 | GO:0044444 | cellular_component | cytoplasmic part | 0.009312183 | 7 | 5412 |
Module550 | 7 | 83 | GO:0044237 | biological_process | cellular metabolic process | 0.010741713 | 7 | 7053 |
Module550 | 7 | 84 | GO:0044238 | biological_process | primary metabolic process | 0.014545225 | 7 | 7365 |
Module550 | 7 | 85 | GO:0005737 | cellular_component | cytoplasm | 0.017047102 | 7 | 5900 |
Module550 | 7 | 86 | GO:1901363 | molecular_function | heterocyclic compound binding | 0.017218062 | 6 | 6456 |
Module550 | 7 | 87 | GO:0097159 | molecular_function | organic cyclic compound binding | 0.017291437 | 6 | 6461 |
Module550 | 7 | 88 | GO:0071704 | biological_process | organic substance metabolic process | 0.021680664 | 7 | 7797 |
Module550 | 7 | 89 | GO:0043231 | cellular_component | intracellular membrane-bounded organelle | 0.023189134 | 7 | 6165 |
Module550 | 7 | 90 | GO:0043227 | cellular_component | membrane-bounded organelle | 0.02321549 | 7 | 6166 |
Module550 | 7 | 91 | GO:0010043 | biological_process | response to zinc ion | 0.029747947 | 1 | 58 |
Module550 | 7 | 92 | GO:0043229 | cellular_component | intracellular organelle | 0.039953268 | 7 | 6663 |
Module550 | 7 | 93 | GO:0043226 | cellular_component | organelle | 0.040037329 | 7 | 6665 |
Module550 | 7 | 94 | GO:0042254 | biological_process | ribosome biogenesis | 0.044335231 | 1 | 87 |
Module550 | 7 | 95 | GO:1990267 | biological_process | response to transition metal nanoparticle | 0.044834869 | 1 | 88 |
Module550 | 7 | 96 | GO:0022613 | biological_process | ribonucleoprotein complex biogenesis | 0.04832607 | 1 | 95 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
elfa1 | GRMZM2G110509 | 0.0377 |
elfa1 | GRMZM2G151193 | 0.0356 |
elfa2 | GRMZM2G001327 | 0.0524 |
elfa2 | GRMZM2G151193 | 0.0377 |
elfa2 | elfa3 | 0.0431 |
GRMZM2G001327 | elfa3 | 0.0454 |
GRMZM2G151193 | elfa3 | 0.0405 |
elfa3 | arpp0 | 0.0357 |