This page contains information for Module558, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
GRMZM2G001243 | Module558 | AT1G72770 | HAB1 | HYPERSENSITIVE TO ABA1 | homology to ABI1 | ||
GRMZM2G073842 | Module558 | ||||||
GRMZM2G137802 | wrky68 | Module558 | AT5G26170 | WRKY50 | WRKY DNA-binding protein 50 | WRKY DNA-binding protein 50 | WRKY |
GRMZM2G380094 | thx24 | Module558 | AT3G14180 | ASIL2 | Arabidopsis 6B-interacting protein 1-like 2 | sequence-specific DNA binding transcription factors | Trihelix |
GRMZM2G437575 | Module558 | AT4G26080 | ABI1 | ABA INSENSITIVE 1 | Protein phosphatase 2C family protein | ||
GRMZM2G160046 | Module558 | AT3G49400 | AT3G49400 | Transducin/WD40 repeat-like superfamily protein | |||
GRMZM5G863420 | wrky82 | Module558 | AT5G26170 | WRKY50 | WRKY DNA-binding protein 50 | WRKY DNA-binding protein 50 | WRKY |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module558 | 7 | 1 | GO:0001933 | biological_process | negative regulation of protein phosphorylation | 0.001186899 | 1 | 4 |
Module558 | 7 | 2 | GO:0006469 | biological_process | negative regulation of protein kinase activity | 0.001186899 | 1 | 4 |
Module558 | 7 | 3 | GO:0033673 | biological_process | negative regulation of kinase activity | 0.001186899 | 1 | 4 |
Module558 | 7 | 4 | GO:0042326 | biological_process | negative regulation of phosphorylation | 0.001483459 | 1 | 5 |
Module558 | 7 | 5 | GO:0010563 | biological_process | negative regulation of phosphorus metabolic process | 0.002669038 | 1 | 9 |
Module558 | 7 | 6 | GO:0045936 | biological_process | negative regulation of phosphate metabolic process | 0.002669038 | 1 | 9 |
Module558 | 7 | 7 | GO:0051348 | biological_process | negative regulation of transferase activity | 0.002669038 | 1 | 9 |
Module558 | 7 | 8 | GO:0031400 | biological_process | negative regulation of protein modification process | 0.003557528 | 1 | 12 |
Module558 | 7 | 9 | GO:0043155 | biological_process | negative regulation of photosynthesis, light reaction | 0.00385356 | 1 | 13 |
Module558 | 7 | 10 | GO:0010205 | biological_process | photoinhibition | 0.00385356 | 1 | 13 |
Module558 | 7 | 11 | GO:0043565 | molecular_function | sequence-specific DNA binding | 0.004534675 | 2 | 460 |
Module558 | 7 | 12 | GO:0080090 | biological_process | regulation of primary metabolic process | 0.005316623 | 3 | 1527 |
Module558 | 7 | 13 | GO:0060255 | biological_process | regulation of macromolecule metabolic process | 0.005367422 | 3 | 1532 |
Module558 | 7 | 14 | GO:0031323 | biological_process | regulation of cellular metabolic process | 0.005594648 | 3 | 1554 |
Module558 | 7 | 15 | GO:0042548 | biological_process | regulation of photosynthesis, light reaction | 0.006219439 | 1 | 21 |
Module558 | 7 | 16 | GO:0043467 | biological_process | regulation of generation of precursor metabolites and energy | 0.00681025 | 1 | 23 |
Module558 | 7 | 17 | GO:0009788 | biological_process | negative regulation of abscisic acid-activated signaling pathway | 0.007991081 | 1 | 27 |
Module558 | 7 | 18 | GO:1901420 | biological_process | negative regulation of response to alcohol | 0.007991081 | 1 | 27 |
Module558 | 7 | 19 | GO:0019222 | biological_process | regulation of metabolic process | 0.008040523 | 3 | 1761 |
Module558 | 7 | 20 | GO:0010109 | biological_process | regulation of photosynthesis | 0.008876013 | 1 | 30 |
Module558 | 7 | 21 | GO:0003700 | molecular_function | transcription factor activity, sequence-specific DNA binding | 0.00982077 | 2 | 683 |
Module558 | 7 | 22 | GO:0001071 | molecular_function | nucleic acid binding transcription factor activity | 0.00984875 | 2 | 684 |
Module558 | 7 | 23 | GO:0009968 | biological_process | negative regulation of signal transduction | 0.010644101 | 1 | 36 |
Module558 | 7 | 24 | GO:0010648 | biological_process | negative regulation of cell communication | 0.010938552 | 1 | 37 |
Module558 | 7 | 25 | GO:0023057 | biological_process | negative regulation of signaling | 0.010938552 | 1 | 37 |
Module558 | 7 | 26 | GO:0009787 | biological_process | regulation of abscisic acid-activated signaling pathway | 0.013291796 | 1 | 45 |
Module558 | 7 | 27 | GO:1901419 | biological_process | regulation of response to alcohol | 0.013291796 | 1 | 45 |
Module558 | 7 | 28 | GO:0004722 | molecular_function | protein serine/threonine phosphatase activity | 0.015516268 | 1 | 64 |
Module558 | 7 | 29 | GO:0043549 | biological_process | regulation of kinase activity | 0.015934173 | 1 | 54 |
Module558 | 7 | 30 | GO:0045859 | biological_process | regulation of protein kinase activity | 0.015934173 | 1 | 54 |
Module558 | 7 | 31 | GO:0001932 | biological_process | regulation of protein phosphorylation | 0.016227443 | 1 | 55 |
Module558 | 7 | 32 | GO:0009767 | biological_process | photosynthetic electron transport chain | 0.016227443 | 1 | 55 |
Module558 | 7 | 33 | GO:0042325 | biological_process | regulation of phosphorylation | 0.017399865 | 1 | 59 |
Module558 | 7 | 34 | GO:0051248 | biological_process | negative regulation of protein metabolic process | 0.017399865 | 1 | 59 |
Module558 | 7 | 35 | GO:0032269 | biological_process | negative regulation of cellular protein metabolic process | 0.017399865 | 1 | 59 |
Module558 | 7 | 36 | GO:0051338 | biological_process | regulation of transferase activity | 0.018278494 | 1 | 62 |
Module558 | 7 | 37 | GO:0044260 | biological_process | cellular macromolecule metabolic process | 0.01835274 | 4 | 4961 |
Module558 | 7 | 38 | GO:0009644 | biological_process | response to high light intensity | 0.018863919 | 1 | 64 |
Module558 | 7 | 39 | GO:0050794 | biological_process | regulation of cellular process | 0.019122122 | 3 | 2381 |
Module558 | 7 | 40 | GO:0048585 | biological_process | negative regulation of response to stimulus | 0.020326337 | 1 | 69 |
Module558 | 7 | 41 | GO:0051174 | biological_process | regulation of phosphorus metabolic process | 0.021203002 | 1 | 72 |
Module558 | 7 | 42 | GO:0019220 | biological_process | regulation of phosphate metabolic process | 0.021203002 | 1 | 72 |
Module558 | 7 | 43 | GO:0031399 | biological_process | regulation of protein modification process | 0.021203002 | 1 | 72 |
Module558 | 7 | 44 | GO:0009738 | biological_process | abscisic acid-activated signaling pathway | 0.022370974 | 1 | 76 |
Module558 | 7 | 45 | GO:0071215 | biological_process | cellular response to abscisic acid stimulus | 0.026159665 | 1 | 89 |
Module558 | 7 | 46 | GO:0043170 | biological_process | macromolecule metabolic process | 0.027367181 | 4 | 5482 |
Module558 | 7 | 47 | GO:0009642 | biological_process | response to light intensity | 0.028776146 | 1 | 98 |
Module558 | 7 | 48 | GO:0050789 | biological_process | regulation of biological process | 0.028798452 | 3 | 2751 |
Module558 | 7 | 49 | GO:0006470 | biological_process | protein dephosphorylation | 0.02906654 | 1 | 99 |
Module558 | 7 | 50 | GO:0004721 | molecular_function | phosphoprotein phosphatase activity | 0.030613043 | 1 | 127 |
Module558 | 7 | 51 | GO:0009966 | biological_process | regulation of signal transduction | 0.03167716 | 1 | 108 |
Module558 | 7 | 52 | GO:0023051 | biological_process | regulation of signaling | 0.032256582 | 1 | 110 |
Module558 | 7 | 53 | GO:0010646 | biological_process | regulation of cell communication | 0.033125227 | 1 | 113 |
Module558 | 7 | 54 | GO:0019684 | biological_process | photosynthesis, light reaction | 0.033703999 | 1 | 115 |
Module558 | 7 | 55 | GO:0065007 | biological_process | biological regulation | 0.034255073 | 3 | 2926 |
Module558 | 7 | 56 | GO:0097306 | biological_process | cellular response to alcohol | 0.035149792 | 1 | 120 |
Module558 | 7 | 57 | GO:0043086 | biological_process | negative regulation of catalytic activity | 0.036305258 | 1 | 124 |
Module558 | 7 | 58 | GO:0044092 | biological_process | negative regulation of molecular function | 0.038613076 | 1 | 132 |
Module558 | 7 | 59 | GO:0071396 | biological_process | cellular response to lipid | 0.038901262 | 1 | 133 |
Module558 | 7 | 60 | GO:0022900 | biological_process | electron transport chain | 0.041204414 | 1 | 141 |
Module558 | 7 | 61 | GO:0016311 | biological_process | dephosphorylation | 0.045224967 | 1 | 155 |
Module558 | 7 | 62 | GO:0009408 | biological_process | response to heat | 0.045798298 | 1 | 157 |
Module558 | 7 | 63 | GO:0031324 | biological_process | negative regulation of cellular metabolic process | 0.047230496 | 1 | 162 |
Module558 | 7 | 64 | GO:2001141 | biological_process | regulation of RNA biosynthetic process | 0.048399432 | 2 | 1293 |
Module558 | 7 | 65 | GO:0006355 | biological_process | regulation of transcription, DNA-templated | 0.048399432 | 2 | 1293 |
Module558 | 7 | 66 | GO:1903506 | biological_process | regulation of nucleic acid-templated transcription | 0.048399432 | 2 | 1293 |
Module558 | 7 | 67 | GO:0010605 | biological_process | negative regulation of macromolecule metabolic process | 0.04866108 | 1 | 167 |
Module558 | 7 | 68 | GO:0051252 | biological_process | regulation of RNA metabolic process | 0.049170056 | 2 | 1304 |
Module558 | 7 | 69 | GO:0032268 | biological_process | regulation of cellular protein metabolic process | 0.049518657 | 1 | 170 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
GRMZM2G001243 | GRMZM2G073842 | 0.037 |
GRMZM2G001243 | wrky68 | 0.0493 |
GRMZM2G001243 | GRMZM2G437575 | 0.0745 |
wrky68 | GRMZM2G437575 | 0.0658 |
wrky68 | wrky82 | 0.035 |
thx24 | GRMZM2G437575 | 0.0351 |
GRMZM2G437575 | GRMZM2G160046 | 0.044 |