This page contains information for Module568, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
GRMZM2G015295 | ahh1 | Module568 | AT4G13940 | HOG1 | HOMOLOGY-DEPENDENT GENE SILENCING 1 | S-adenosyl-L-homocysteine hydrolase | |
GRMZM2G078143 | gly1 | Module568 | AT4G13930 | SHM4 | serine hydroxymethyltransferase 4 | serine hydroxymethyltransferase 4 | |
GRMZM2G165747 | Module568 | AT5G17920 | ATMS1 | methionine synthesis 1 | Cobalamin-independent synthase family protein | ||
GRMZM2G300801 | Module568 | AT4G35630 | PSAT | phosphoserine aminotransferase | phosphoserine aminotransferase | ||
GRMZM2G449274 | Module568 | AT2G27140 | AT2G27140 | HSP20-like chaperones superfamily protein | |||
GRMZM2G149751 | Module568 | AT5G17920 | ATMS1 | methionine synthesis 1 | Cobalamin-independent synthase family protein | ||
GRMZM2G540538 | Module568 | AT5G03300 | ADK2 | adenosine kinase 2 | adenosine kinase 2 |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module568 | 7 | 1 | GO:0003871 | molecular_function | 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity | 3.34E-07 | 2 | 3 |
Module568 | 7 | 2 | GO:0042085 | molecular_function | 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity | 3.34E-07 | 2 | 3 |
Module568 | 7 | 3 | GO:0044281 | biological_process | small molecule metabolic process | 1.75E-06 | 6 | 1482 |
Module568 | 7 | 4 | GO:1901605 | biological_process | alpha-amino acid metabolic process | 2.32E-06 | 4 | 271 |
Module568 | 7 | 5 | GO:0008172 | molecular_function | S-methyltransferase activity | 2.34E-06 | 2 | 7 |
Module568 | 7 | 6 | GO:0046686 | biological_process | response to cadmium ion | 1.50E-05 | 4 | 433 |
Module568 | 7 | 7 | GO:0006520 | biological_process | cellular amino acid metabolic process | 1.61E-05 | 4 | 441 |
Module568 | 7 | 8 | GO:0006730 | biological_process | one-carbon metabolic process | 2.52E-05 | 2 | 18 |
Module568 | 7 | 9 | GO:0010038 | biological_process | response to metal ion | 3.07E-05 | 4 | 519 |
Module568 | 7 | 10 | GO:1901607 | biological_process | alpha-amino acid biosynthetic process | 3.20E-05 | 3 | 160 |
Module568 | 7 | 11 | GO:0009086 | biological_process | methionine biosynthetic process | 3.46E-05 | 2 | 21 |
Module568 | 7 | 12 | GO:0006563 | biological_process | L-serine metabolic process | 5.77E-05 | 2 | 27 |
Module568 | 7 | 13 | GO:0006555 | biological_process | methionine metabolic process | 5.77E-05 | 2 | 27 |
Module568 | 7 | 14 | GO:0008652 | biological_process | cellular amino acid biosynthetic process | 6.91E-05 | 3 | 207 |
Module568 | 7 | 15 | GO:0005507 | molecular_function | copper ion binding | 8.41E-05 | 3 | 269 |
Module568 | 7 | 16 | GO:0008168 | molecular_function | methyltransferase activity | 0.000101938 | 3 | 287 |
Module568 | 7 | 17 | GO:0000097 | biological_process | sulfur amino acid biosynthetic process | 0.000103383 | 2 | 36 |
Module568 | 7 | 18 | GO:0016741 | molecular_function | transferase activity, transferring one-carbon groups | 0.000118586 | 3 | 302 |
Module568 | 7 | 19 | GO:0009067 | biological_process | aspartate family amino acid biosynthetic process | 0.000147976 | 2 | 43 |
Module568 | 7 | 20 | GO:0009069 | biological_process | serine family amino acid metabolic process | 0.000162169 | 2 | 45 |
Module568 | 7 | 21 | GO:0010035 | biological_process | response to inorganic substance | 0.000192987 | 4 | 829 |
Module568 | 7 | 22 | GO:1901564 | biological_process | organonitrogen compound metabolic process | 0.000213118 | 5 | 1779 |
Module568 | 7 | 23 | GO:0009066 | biological_process | aspartate family amino acid metabolic process | 0.000225369 | 2 | 53 |
Module568 | 7 | 24 | GO:0000096 | biological_process | sulfur amino acid metabolic process | 0.000251714 | 2 | 56 |
Module568 | 7 | 25 | GO:0019752 | biological_process | carboxylic acid metabolic process | 0.000287182 | 4 | 918 |
Module568 | 7 | 26 | GO:0043436 | biological_process | oxoacid metabolic process | 0.00030715 | 4 | 934 |
Module568 | 7 | 27 | GO:0006082 | biological_process | organic acid metabolic process | 0.000309716 | 4 | 936 |
Module568 | 7 | 28 | GO:0044710 | biological_process | single-organism metabolic process | 0.000502893 | 6 | 3802 |
Module568 | 7 | 29 | GO:0006807 | biological_process | nitrogen compound metabolic process | 0.000574286 | 6 | 3887 |
Module568 | 7 | 30 | GO:0016053 | biological_process | organic acid biosynthetic process | 0.000695101 | 3 | 452 |
Module568 | 7 | 31 | GO:0046394 | biological_process | carboxylic acid biosynthetic process | 0.000695101 | 3 | 452 |
Module568 | 7 | 32 | GO:0004013 | molecular_function | adenosylhomocysteinase activity | 0.000731417 | 1 | 2 |
Module568 | 7 | 33 | GO:0004001 | molecular_function | adenosine kinase activity | 0.000731417 | 1 | 2 |
Module568 | 7 | 34 | GO:0016801 | molecular_function | hydrolase activity, acting on ether bonds | 0.000731417 | 1 | 2 |
Module568 | 7 | 35 | GO:0016802 | molecular_function | trialkylsulfonium hydrolase activity | 0.000731417 | 1 | 2 |
Module568 | 7 | 36 | GO:0042084 | molecular_function | 5-methyltetrahydrofolate-dependent methyltransferase activity | 0.000731417 | 1 | 2 |
Module568 | 7 | 37 | GO:0008705 | molecular_function | methionine synthase activity | 0.000731417 | 1 | 2 |
Module568 | 7 | 38 | GO:0030170 | molecular_function | pyridoxal phosphate binding | 0.000755236 | 2 | 118 |
Module568 | 7 | 39 | GO:0044272 | biological_process | sulfur compound biosynthetic process | 0.000802047 | 2 | 100 |
Module568 | 7 | 40 | GO:0080094 | biological_process | response to trehalose-6-phosphate | 0.000890307 | 1 | 2 |
Module568 | 7 | 41 | GO:0044711 | biological_process | single-organism biosynthetic process | 0.000930899 | 4 | 1244 |
Module568 | 7 | 42 | GO:1901566 | biological_process | organonitrogen compound biosynthetic process | 0.001152099 | 4 | 1315 |
Module568 | 7 | 43 | GO:0044283 | biological_process | small molecule biosynthetic process | 0.001319705 | 3 | 563 |
Module568 | 7 | 44 | GO:0046683 | biological_process | response to organophosphorus | 0.001335212 | 1 | 3 |
Module568 | 7 | 45 | GO:0006166 | biological_process | purine ribonucleoside salvage | 0.001335212 | 1 | 3 |
Module568 | 7 | 46 | GO:0016740 | molecular_function | transferase activity | 0.001680433 | 5 | 3316 |
Module568 | 7 | 47 | GO:0006790 | biological_process | sulfur compound metabolic process | 0.001745831 | 2 | 148 |
Module568 | 7 | 48 | GO:0006167 | biological_process | AMP biosynthetic process | 0.001779953 | 1 | 4 |
Module568 | 7 | 49 | GO:0046033 | biological_process | AMP metabolic process | 0.001779953 | 1 | 4 |
Module568 | 7 | 50 | GO:0043167 | molecular_function | ion binding | 0.002005628 | 6 | 5827 |
Module568 | 7 | 51 | GO:0044763 | biological_process | single-organism cellular process | 0.002142117 | 6 | 4840 |
Module568 | 7 | 52 | GO:0043174 | biological_process | nucleoside salvage | 0.002224528 | 1 | 5 |
Module568 | 7 | 53 | GO:0035999 | biological_process | tetrahydrofolate interconversion | 0.002224528 | 1 | 5 |
Module568 | 7 | 54 | GO:0006564 | biological_process | L-serine biosynthetic process | 0.002668939 | 1 | 6 |
Module568 | 7 | 55 | GO:0004372 | molecular_function | glycine hydroxymethyltransferase activity | 0.002922995 | 1 | 8 |
Module568 | 7 | 56 | GO:0019206 | molecular_function | nucleoside kinase activity | 0.002922995 | 1 | 8 |
Module568 | 7 | 57 | GO:0042221 | biological_process | response to chemical | 0.002936735 | 4 | 1681 |
Module568 | 7 | 58 | GO:0043101 | biological_process | purine-containing compound salvage | 0.003557265 | 1 | 8 |
Module568 | 7 | 59 | GO:0006346 | biological_process | methylation-dependent chromatin silencing | 0.00400118 | 1 | 9 |
Module568 | 7 | 60 | GO:0046914 | molecular_function | transition metal ion binding | 0.004036406 | 4 | 2226 |
Module568 | 7 | 61 | GO:0016742 | molecular_function | hydroxymethyl-, formyl- and related transferase activity | 0.005110566 | 1 | 14 |
Module568 | 7 | 62 | GO:0046653 | biological_process | tetrahydrofolate metabolic process | 0.005775195 | 1 | 13 |
Module568 | 7 | 63 | GO:0044249 | biological_process | cellular biosynthetic process | 0.005898746 | 5 | 3546 |
Module568 | 7 | 64 | GO:0032259 | biological_process | methylation | 0.005979314 | 2 | 277 |
Module568 | 7 | 65 | GO:0005886 | cellular_component | plasma membrane | 0.006057179 | 4 | 2055 |
Module568 | 7 | 66 | GO:1901576 | biological_process | organic substance biosynthetic process | 0.006384782 | 5 | 3606 |
Module568 | 7 | 67 | GO:0006544 | biological_process | glycine metabolic process | 0.007103978 | 1 | 16 |
Module568 | 7 | 68 | GO:0009058 | biological_process | biosynthetic process | 0.007774097 | 5 | 3760 |
Module568 | 7 | 69 | GO:0010197 | biological_process | polar nucleus fusion | 0.008873386 | 1 | 20 |
Module568 | 7 | 70 | GO:0009559 | biological_process | embryo sac central cell differentiation | 0.008873386 | 1 | 20 |
Module568 | 7 | 71 | GO:0000741 | biological_process | karyogamy | 0.009757104 | 1 | 22 |
Module568 | 7 | 72 | GO:0009070 | biological_process | serine family amino acid biosynthetic process | 0.010198717 | 1 | 23 |
Module568 | 7 | 73 | GO:0045814 | biological_process | negative regulation of gene expression, epigenetic | 0.010198717 | 1 | 23 |
Module568 | 7 | 74 | GO:0006342 | biological_process | chromatin silencing | 0.010198717 | 1 | 23 |
Module568 | 7 | 75 | GO:0048046 | cellular_component | apoplast | 0.010606638 | 2 | 356 |
Module568 | 7 | 76 | GO:0048284 | biological_process | organelle fusion | 0.010640165 | 1 | 24 |
Module568 | 7 | 77 | GO:0006997 | biological_process | nucleus organization | 0.01152257 | 1 | 26 |
Module568 | 7 | 78 | GO:0071944 | cellular_component | cell periphery | 0.011900032 | 4 | 2455 |
Module568 | 7 | 79 | GO:0006760 | biological_process | folic acid-containing compound metabolic process | 0.012844948 | 1 | 29 |
Module568 | 7 | 80 | GO:0042558 | biological_process | pteridine-containing compound metabolic process | 0.013725714 | 1 | 31 |
Module568 | 7 | 81 | GO:0048037 | molecular_function | cofactor binding | 0.013873008 | 2 | 521 |
Module568 | 7 | 82 | GO:0019205 | molecular_function | nucleobase-containing compound kinase activity | 0.014543881 | 1 | 40 |
Module568 | 7 | 83 | GO:0046872 | molecular_function | metal ion binding | 0.015195619 | 4 | 3184 |
Module568 | 7 | 84 | GO:0043169 | molecular_function | cation binding | 0.015404931 | 4 | 3196 |
Module568 | 7 | 85 | GO:0016769 | molecular_function | transferase activity, transferring nitrogenous groups | 0.017431399 | 1 | 48 |
Module568 | 7 | 86 | GO:0008483 | molecular_function | transaminase activity | 0.017431399 | 1 | 48 |
Module568 | 7 | 87 | GO:0043094 | biological_process | cellular metabolic compound salvage | 0.01768106 | 1 | 40 |
Module568 | 7 | 88 | GO:0016441 | biological_process | posttranscriptional gene silencing | 0.019434744 | 1 | 44 |
Module568 | 7 | 89 | GO:0044699 | biological_process | single-organism process | 0.019877174 | 6 | 7015 |
Module568 | 7 | 90 | GO:0009561 | biological_process | megagametogenesis | 0.020310607 | 1 | 46 |
Module568 | 7 | 91 | GO:0044237 | biological_process | cellular metabolic process | 0.020532266 | 6 | 7053 |
Module568 | 7 | 92 | GO:0003824 | molecular_function | catalytic activity | 0.02113986 | 6 | 8627 |
Module568 | 7 | 93 | GO:0005576 | cellular_component | extracellular region | 0.022183773 | 2 | 523 |
Module568 | 7 | 94 | GO:0010043 | biological_process | response to zinc ion | 0.025552106 | 1 | 58 |
Module568 | 7 | 95 | GO:0044238 | biological_process | primary metabolic process | 0.026623751 | 6 | 7365 |
Module568 | 7 | 96 | GO:0009570 | cellular_component | chloroplast stroma | 0.029405097 | 2 | 607 |
Module568 | 7 | 97 | GO:0045892 | biological_process | negative regulation of transcription, DNA-templated | 0.029467876 | 1 | 67 |
Module568 | 7 | 98 | GO:1903507 | biological_process | negative regulation of nucleic acid-templated transcription | 0.029467876 | 1 | 67 |
Module568 | 7 | 99 | GO:1902679 | biological_process | negative regulation of RNA biosynthetic process | 0.029467876 | 1 | 67 |
Module568 | 7 | 100 | GO:0051253 | biological_process | negative regulation of RNA metabolic process | 0.029902151 | 1 | 68 |
Module568 | 7 | 101 | GO:0016458 | biological_process | gene silencing | 0.029902151 | 1 | 68 |
Module568 | 7 | 102 | GO:0009168 | biological_process | purine ribonucleoside monophosphate biosynthetic process | 0.030770215 | 1 | 70 |
Module568 | 7 | 103 | GO:0009127 | biological_process | purine nucleoside monophosphate biosynthetic process | 0.030770215 | 1 | 70 |
Module568 | 7 | 104 | GO:0009532 | cellular_component | plastid stroma | 0.030787338 | 2 | 622 |
Module568 | 7 | 105 | GO:0006575 | biological_process | cellular modified amino acid metabolic process | 0.032071098 | 1 | 73 |
Module568 | 7 | 106 | GO:0040029 | biological_process | regulation of gene expression, epigenetic | 0.032937544 | 1 | 75 |
Module568 | 7 | 107 | GO:0009156 | biological_process | ribonucleoside monophosphate biosynthetic process | 0.034668498 | 1 | 79 |
Module568 | 7 | 108 | GO:0009124 | biological_process | nucleoside monophosphate biosynthetic process | 0.035965018 | 1 | 82 |
Module568 | 7 | 109 | GO:0045934 | biological_process | negative regulation of nucleobase-containing compound metabolic process | 0.035965018 | 1 | 82 |
Module568 | 7 | 110 | GO:0071704 | biological_process | organic substance metabolic process | 0.03748409 | 6 | 7797 |
Module568 | 7 | 111 | GO:0046129 | biological_process | purine ribonucleoside biosynthetic process | 0.037691454 | 1 | 86 |
Module568 | 7 | 112 | GO:0042451 | biological_process | purine nucleoside biosynthetic process | 0.037691454 | 1 | 86 |
Module568 | 7 | 113 | GO:1990267 | biological_process | response to transition metal nanoparticle | 0.038553706 | 1 | 88 |
Module568 | 7 | 114 | GO:0009553 | biological_process | embryo sac development | 0.039415313 | 1 | 90 |
Module568 | 7 | 115 | GO:0009152 | biological_process | purine ribonucleotide biosynthetic process | 0.039845875 | 1 | 91 |
Module568 | 7 | 116 | GO:0006164 | biological_process | purine nucleotide biosynthetic process | 0.041566517 | 1 | 95 |
Module568 | 7 | 117 | GO:0006996 | biological_process | organelle organization | 0.042040281 | 2 | 771 |
Module568 | 7 | 118 | GO:0042455 | biological_process | ribonucleoside biosynthetic process | 0.042425874 | 1 | 97 |
Module568 | 7 | 119 | GO:0009163 | biological_process | nucleoside biosynthetic process | 0.042425874 | 1 | 97 |
Module568 | 7 | 120 | GO:0050896 | biological_process | response to stimulus | 0.044130452 | 4 | 3528 |
Module568 | 7 | 121 | GO:0009260 | biological_process | ribonucleotide biosynthetic process | 0.044142661 | 1 | 101 |
Module568 | 7 | 122 | GO:0046390 | biological_process | ribose phosphate biosynthetic process | 0.044142661 | 1 | 101 |
Module568 | 7 | 123 | GO:0010558 | biological_process | negative regulation of macromolecule biosynthetic process | 0.045856883 | 1 | 105 |
Module568 | 7 | 124 | GO:2000113 | biological_process | negative regulation of cellular macromolecule biosynthetic process | 0.045856883 | 1 | 105 |
Module568 | 7 | 125 | GO:0016569 | biological_process | covalent chromatin modification | 0.046285038 | 1 | 106 |
Module568 | 7 | 126 | GO:1901659 | biological_process | glycosyl compound biosynthetic process | 0.048423411 | 1 | 111 |
Module568 | 7 | 127 | GO:0031327 | biological_process | negative regulation of cellular biosynthetic process | 0.048423411 | 1 | 111 |
Module568 | 7 | 128 | GO:0010608 | biological_process | posttranscriptional regulation of gene expression | 0.048850606 | 1 | 112 |
Module568 | 7 | 129 | GO:0072522 | biological_process | purine-containing compound biosynthetic process | 0.049277641 | 1 | 113 |
Module568 | 7 | 130 | GO:0009890 | biological_process | negative regulation of biosynthetic process | 0.049704516 | 1 | 114 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
ahh1 | gly1 | 0.0455 |
ahh1 | GRMZM2G449274 | 0.0431 |
ahh1 | GRMZM2G540538 | 0.0351 |
gly1 | GRMZM2G165747 | 0.0383 |
gly1 | GRMZM2G300801 | 0.0363 |
gly1 | GRMZM2G449274 | 0.038 |
GRMZM2G165747 | GRMZM2G449274 | 0.0416 |
GRMZM2G449274 | GRMZM2G149751 | 0.0542 |