This page contains information for Module585, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
GRMZM2G071021 | aldh3 | Module585 | AT3G24503 | ALDH2C4 | aldehyde dehydrogenase 2C4 | aldehyde dehydrogenase 2C4 | |
AC209208.3_FG002 | pip1b | Module585 | AT4G23400 | PIP1;5 | plasma membrane intrinsic protein 1;5 | plasma membrane intrinsic protein 1;5 | |
GRMZM2G014914 | pip2e | Module585 | AT3G53420 | PIP2A | plasma membrane intrinsic protein 2A | plasma membrane intrinsic protein 2A | |
GRMZM2G092125 | pip2b | Module585 | AT2G37170 | PIP2B | plasma membrane intrinsic protein 2 | plasma membrane intrinsic protein 2 | |
GRMZM2G035134 | Module585 | AT4G29530 | AT4G29530 | Pyridoxal phosphate phosphatase-related protein | |||
GRMZM2G174807 | pip1a | Module585 | AT4G23400 | PIP1;5 | plasma membrane intrinsic protein 1;5 | plasma membrane intrinsic protein 1;5 | |
GRMZM2G392975 | pip1d | Module585 | AT4G23400 | PIP1;5 | plasma membrane intrinsic protein 1;5 | plasma membrane intrinsic protein 1;5 |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module585 | 7 | 1 | GO:0005372 | molecular_function | water transmembrane transporter activity | 3.83E-12 | 4 | 11 |
Module585 | 7 | 2 | GO:0015250 | molecular_function | water channel activity | 3.83E-12 | 4 | 11 |
Module585 | 7 | 3 | GO:0006833 | biological_process | water transport | 6.05E-11 | 4 | 17 |
Module585 | 7 | 4 | GO:0042044 | biological_process | fluid transport | 6.05E-11 | 4 | 17 |
Module585 | 7 | 5 | GO:0031225 | cellular_component | anchored component of membrane | 2.82E-09 | 4 | 53 |
Module585 | 7 | 6 | GO:0046658 | cellular_component | anchored component of plasma membrane | 2.82E-09 | 4 | 53 |
Module585 | 7 | 7 | GO:0031226 | cellular_component | intrinsic component of plasma membrane | 7.38E-09 | 4 | 67 |
Module585 | 7 | 8 | GO:0022838 | molecular_function | substrate-specific channel activity | 1.25E-08 | 4 | 73 |
Module585 | 7 | 9 | GO:0022803 | molecular_function | passive transmembrane transporter activity | 1.25E-08 | 4 | 73 |
Module585 | 7 | 10 | GO:0015267 | molecular_function | channel activity | 1.25E-08 | 4 | 73 |
Module585 | 7 | 11 | GO:0044459 | cellular_component | plasma membrane part | 1.06E-07 | 4 | 129 |
Module585 | 7 | 12 | GO:0009414 | biological_process | response to water deprivation | 3.46E-06 | 4 | 243 |
Module585 | 7 | 13 | GO:0009415 | biological_process | response to water | 4.00E-06 | 4 | 252 |
Module585 | 7 | 14 | GO:0001101 | biological_process | response to acid chemical | 7.48E-06 | 5 | 706 |
Module585 | 7 | 15 | GO:0005215 | molecular_function | transporter activity | 1.29E-05 | 5 | 959 |
Module585 | 7 | 16 | GO:1901700 | biological_process | response to oxygen-containing compound | 2.60E-05 | 5 | 910 |
Module585 | 7 | 17 | GO:0016021 | cellular_component | integral component of membrane | 4.64E-05 | 5 | 1436 |
Module585 | 7 | 18 | GO:0031224 | cellular_component | intrinsic component of membrane | 5.73E-05 | 5 | 1498 |
Module585 | 7 | 19 | GO:0022891 | molecular_function | substrate-specific transmembrane transporter activity | 6.66E-05 | 4 | 625 |
Module585 | 7 | 20 | GO:0022892 | molecular_function | substrate-specific transporter activity | 0.000102637 | 4 | 698 |
Module585 | 7 | 21 | GO:0022857 | molecular_function | transmembrane transporter activity | 0.000137951 | 4 | 753 |
Module585 | 7 | 22 | GO:0005773 | cellular_component | vacuole | 0.000185012 | 4 | 838 |
Module585 | 7 | 23 | GO:0044425 | cellular_component | membrane part | 0.000185902 | 5 | 1895 |
Module585 | 7 | 24 | GO:0005886 | cellular_component | plasma membrane | 0.000278918 | 5 | 2055 |
Module585 | 7 | 25 | GO:0010035 | biological_process | response to inorganic substance | 0.000428334 | 4 | 829 |
Module585 | 7 | 26 | GO:0042221 | biological_process | response to chemical | 0.000507083 | 5 | 1681 |
Module585 | 7 | 27 | GO:0071944 | cellular_component | cell periphery | 0.000679234 | 5 | 2455 |
Module585 | 7 | 28 | GO:0006810 | biological_process | transport | 0.000951935 | 5 | 1919 |
Module585 | 7 | 29 | GO:0051234 | biological_process | establishment of localization | 0.000978057 | 5 | 1930 |
Module585 | 7 | 30 | GO:0051179 | biological_process | localization | 0.001095988 | 5 | 1977 |
Module585 | 7 | 31 | GO:0009506 | cellular_component | plasmodesma | 0.001104109 | 3 | 520 |
Module585 | 7 | 32 | GO:0055044 | cellular_component | symplast | 0.001104109 | 3 | 520 |
Module585 | 7 | 33 | GO:0005911 | cellular_component | cell-cell junction | 0.001104109 | 3 | 520 |
Module585 | 7 | 34 | GO:0030054 | cellular_component | cell junction | 0.001104109 | 3 | 520 |
Module585 | 7 | 35 | GO:0009941 | cellular_component | chloroplast envelope | 0.001266796 | 3 | 545 |
Module585 | 7 | 36 | GO:0050269 | molecular_function | coniferyl-aldehyde dehydrogenase activity | 0.001279707 | 1 | 3 |
Module585 | 7 | 37 | GO:0006950 | biological_process | response to stress | 0.001346137 | 5 | 2065 |
Module585 | 7 | 38 | GO:0009651 | biological_process | response to salt stress | 0.00136154 | 3 | 474 |
Module585 | 7 | 39 | GO:0009526 | cellular_component | plastid envelope | 0.001429503 | 3 | 568 |
Module585 | 7 | 40 | GO:0050896 | biological_process | response to stimulus | 0.001743154 | 6 | 3528 |
Module585 | 7 | 41 | GO:0006970 | biological_process | response to osmotic stress | 0.001750433 | 3 | 517 |
Module585 | 7 | 42 | GO:0015669 | biological_process | gas transport | 0.00207638 | 1 | 4 |
Module585 | 7 | 43 | GO:0009628 | biological_process | response to abiotic stimulus | 0.003367574 | 4 | 1427 |
Module585 | 7 | 44 | GO:0004030 | molecular_function | aldehyde dehydrogenase [NAD(P)+] activity | 0.003409434 | 1 | 8 |
Module585 | 7 | 45 | GO:0044765 | biological_process | single-organism transport | 0.003465363 | 4 | 1438 |
Module585 | 7 | 46 | GO:1902578 | biological_process | single-organism localization | 0.003723351 | 4 | 1466 |
Module585 | 7 | 47 | GO:0031967 | cellular_component | organelle envelope | 0.00450864 | 3 | 844 |
Module585 | 7 | 48 | GO:0031975 | cellular_component | envelope | 0.004648288 | 3 | 853 |
Module585 | 7 | 49 | GO:0051262 | biological_process | protein tetramerization | 0.004666658 | 1 | 9 |
Module585 | 7 | 50 | GO:0019755 | biological_process | one-carbon compound transport | 0.004666658 | 1 | 9 |
Module585 | 7 | 51 | GO:0005739 | cellular_component | mitochondrion | 0.005703047 | 3 | 916 |
Module585 | 7 | 52 | GO:0009507 | cellular_component | chloroplast | 0.005802294 | 4 | 2032 |
Module585 | 7 | 53 | GO:0009536 | cellular_component | plastid | 0.007082289 | 4 | 2141 |
Module585 | 7 | 54 | GO:0044434 | cellular_component | chloroplast part | 0.010035413 | 3 | 1117 |
Module585 | 7 | 55 | GO:0044435 | cellular_component | plastid part | 0.010499811 | 3 | 1135 |
Module585 | 7 | 56 | GO:0051259 | biological_process | protein oligomerization | 0.010859824 | 1 | 21 |
Module585 | 7 | 57 | GO:0009737 | biological_process | response to abscisic acid | 0.013601285 | 2 | 359 |
Module585 | 7 | 58 | GO:0097305 | biological_process | response to alcohol | 0.017359751 | 2 | 408 |
Module585 | 7 | 59 | GO:0016020 | cellular_component | membrane | 0.017802447 | 5 | 4716 |
Module585 | 7 | 60 | GO:0033993 | biological_process | response to lipid | 0.02055223 | 2 | 446 |
Module585 | 7 | 61 | GO:0016620 | molecular_function | oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | 0.021983782 | 1 | 52 |
Module585 | 7 | 62 | GO:0016903 | molecular_function | oxidoreductase activity, acting on the aldehyde or oxo group of donors | 0.027831218 | 1 | 66 |
Module585 | 7 | 63 | GO:0016036 | biological_process | cellular response to phosphate starvation | 0.028228084 | 1 | 55 |
Module585 | 7 | 64 | GO:0009699 | biological_process | phenylpropanoid biosynthetic process | 0.029241553 | 1 | 57 |
Module585 | 7 | 65 | GO:0044444 | cellular_component | cytoplasmic part | 0.035441995 | 5 | 5412 |
Module585 | 7 | 66 | GO:0009698 | biological_process | phenylpropanoid metabolic process | 0.039326517 | 1 | 77 |
Module585 | 7 | 67 | GO:0009267 | biological_process | cellular response to starvation | 0.040831488 | 1 | 80 |
Module585 | 7 | 68 | GO:0044550 | biological_process | secondary metabolite biosynthetic process | 0.042834973 | 1 | 84 |
Module585 | 7 | 69 | GO:0042594 | biological_process | response to starvation | 0.043835369 | 1 | 86 |
Module585 | 7 | 70 | GO:0031669 | biological_process | cellular response to nutrient levels | 0.04633244 | 1 | 91 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
aldh3 | pip1b | 0.0374 |
pip1b | pip1a | 0.0427 |
pip1b | pip1d | 0.0461 |
pip2e | pip2b | 0.0397 |
pip2e | pip1a | 0.038 |
pip2b | GRMZM2G035134 | 0.0373 |
pip2b | pip1a | 0.0477 |
pip1a | pip1d | 0.0383 |