Module588
This page contains information for Module588, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format ) is provided for downloding, which can be opened and viewed within the Cytoscape software . Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
The list of genes within the module (containing 7 genes) Click to Show / Hide Gene List
Maize Gene Symbol Moule No. Arabidopsis Homologue Arabidopsis Homologue Symbol Arabidopsis Homologue Name Arabidopsis Homologue Description Arabidopsis Homologue TF_Family
GRMZM2G073805 gras72 Module588 AT2G37650 AT2G37650 GRAS family transcription factor GRAS
GRMZM2G073823 gras68 Module588 AT2G37650 AT2G37650 GRAS family transcription factor GRAS
GRMZM2G328133 Module588
GRMZM2G452896 Module588 AT2G24280 AT2G24280 alpha/beta-Hydrolases superfamily protein
GRMZM2G470422 c2h5 Module588 AT1G34370 STOP1 sensitive to proton rhizotoxicity 1 C2H2 and C2HC zinc fingers superfamily protein C2H2
GRMZM5G892627 Module588 AT3G55700 AT3G55700 UDP-Glycosyltransferase superfamily protein
GRMZM2G401997 Module588 AT2G34000 AT2G34000 RING/U-box superfamily protein
Gene Ontology enrichment analysis Click to Show / Hide Results
Module No. Number of genes within the module GO_Rank GO ID GO catogery GO term pValue Number of genes with the GO within the module Number of genes with the GO within the genome (background set)
Module588 7 1 GO:0008236 molecular_function serine-type peptidase activity 0.044121805 1 184
Module588 7 2 GO:0017171 molecular_function serine hydrolase activity 0.044121805 1 184
Module588 7 3 GO:0008270 molecular_function zinc ion binding 0.044684541 2 1508
Module588 7 4 GO:2001141 biological_process regulation of RNA biosynthetic process 0.048399432 2 1293
Module588 7 5 GO:0006355 biological_process regulation of transcription, DNA-templated 0.048399432 2 1293
Module588 7 6 GO:1903506 biological_process regulation of nucleic acid-templated transcription 0.048399432 2 1293
Module588 7 7 GO:0051252 biological_process regulation of RNA metabolic process 0.049170056 2 1304
A development heatmap for the genes within the module (showing these genes' tissue-specific expression patterns)Click to Download the Heatmap
A subnetwork extracted for the genes witin module
All gene pairs of the subnetwork Click to Show / Hide Gene Pairs
Gene A Gene B Partial correlation coefficient
gras72 gras68 0.0499
gras72 GRMZM5G892627 0.0458
GRMZM2G328133 GRMZM5G892627 0.0353
GRMZM2G452896 GRMZM5G892627 0.036
c2h5 GRMZM5G892627 0.047
GRMZM5G892627 GRMZM2G401997 0.0366
A sif file of the subnetwork (This file conains the information of the subnetwork, which be opened using Cytoscape to produce a visualization of the subenetwork.)Click to Download the SIF file
Visualization of the subnetwork Click to Visualize the Subnetwork