This page contains information for Module590, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
GRMZM2G076802 | Module590 | AT4G10130 | AT4G10130 | DNAJ heat shock N-terminal domain-containing protein | |||
GRMZM2G078508 | Module590 | AT4G02980 | ABP1 | endoplasmic reticulum auxin binding protein 1 | endoplasmic reticulum auxin binding protein 1 | ||
GRMZM2G064371 | abp4 | Module590 | AT4G02980 | ABP1 | endoplasmic reticulum auxin binding protein 1 | endoplasmic reticulum auxin binding protein 1 | |
GRMZM2G079468 | Module590 | AT5G19840 | AT5G19840 | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | |||
GRMZM2G322634 | Module590 | AT5G41960 | AT5G41960 | ||||
GRMZM2G359664 | Module590 | AT1G79860 | ROPGEF12 | ROP (rho of plants) guanine nucleotide exchange factor 12 | RHO guanyl-nucleotide exchange factor 12 | ||
GRMZM6G820695 | Module590 | AT1G73320 | AT1G73320 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module590 | 7 | 1 | GO:0010011 | molecular_function | auxin binding | 4.46E-07 | 2 | 5 |
Module590 | 7 | 2 | GO:0005788 | cellular_component | endoplasmic reticulum lumen | 2.42E-06 | 2 | 10 |
Module590 | 7 | 3 | GO:0042562 | molecular_function | hormone binding | 2.94E-06 | 2 | 12 |
Module590 | 7 | 4 | GO:0060089 | molecular_function | molecular transducer activity | 8.67E-05 | 2 | 63 |
Module590 | 7 | 5 | GO:0004872 | molecular_function | receptor activity | 8.67E-05 | 2 | 63 |
Module590 | 7 | 6 | GO:0009734 | biological_process | auxin-activated signaling pathway | 0.000222945 | 2 | 117 |
Module590 | 7 | 7 | GO:0071365 | biological_process | cellular response to auxin stimulus | 0.000242432 | 2 | 122 |
Module590 | 7 | 8 | GO:0044432 | cellular_component | endoplasmic reticulum part | 0.000281234 | 2 | 103 |
Module590 | 7 | 9 | GO:0009826 | biological_process | unidimensional cell growth | 0.000493077 | 2 | 174 |
Module590 | 7 | 10 | GO:0060560 | biological_process | developmental growth involved in morphogenesis | 0.000657598 | 2 | 201 |
Module590 | 7 | 11 | GO:0045793 | biological_process | positive regulation of cell size | 0.000667755 | 1 | 3 |
Module590 | 7 | 12 | GO:0009733 | biological_process | response to auxin | 0.000852897 | 2 | 229 |
Module590 | 7 | 13 | GO:0000902 | biological_process | cell morphogenesis | 0.000867806 | 2 | 231 |
Module590 | 7 | 14 | GO:2000105 | biological_process | positive regulation of DNA-dependent DNA replication | 0.000890274 | 1 | 4 |
Module590 | 7 | 15 | GO:0032877 | biological_process | positive regulation of DNA endoreduplication | 0.000890274 | 1 | 4 |
Module590 | 7 | 16 | GO:0048589 | biological_process | developmental growth | 0.000999681 | 2 | 248 |
Module590 | 7 | 17 | GO:0032989 | biological_process | cellular component morphogenesis | 0.00104022 | 2 | 253 |
Module590 | 7 | 18 | GO:0016049 | biological_process | cell growth | 0.001089916 | 2 | 259 |
Module590 | 7 | 19 | GO:0045740 | biological_process | positive regulation of DNA replication | 0.00111276 | 1 | 5 |
Module590 | 7 | 20 | GO:0051054 | biological_process | positive regulation of DNA metabolic process | 0.00111276 | 1 | 5 |
Module590 | 7 | 21 | GO:0009755 | biological_process | hormone-mediated signaling pathway | 0.001364879 | 2 | 290 |
Module590 | 7 | 22 | GO:0032870 | biological_process | cellular response to hormone stimulus | 0.001618933 | 2 | 316 |
Module590 | 7 | 23 | GO:0071495 | biological_process | cellular response to endogenous stimulus | 0.001670233 | 2 | 321 |
Module590 | 7 | 24 | GO:0040007 | biological_process | growth | 0.001775193 | 2 | 331 |
Module590 | 7 | 25 | GO:0071310 | biological_process | cellular response to organic substance | 0.002371529 | 2 | 383 |
Module590 | 7 | 26 | GO:0051781 | biological_process | positive regulation of cell division | 0.002446981 | 1 | 11 |
Module590 | 7 | 27 | GO:0048869 | biological_process | cellular developmental process | 0.002701345 | 2 | 409 |
Module590 | 7 | 28 | GO:0008361 | biological_process | regulation of cell size | 0.002891457 | 1 | 13 |
Module590 | 7 | 29 | GO:0032875 | biological_process | regulation of DNA endoreduplication | 0.002891457 | 1 | 13 |
Module590 | 7 | 30 | GO:0090068 | biological_process | positive regulation of cell cycle process | 0.002891457 | 1 | 13 |
Module590 | 7 | 31 | GO:0070887 | biological_process | cellular response to chemical stimulus | 0.003264039 | 2 | 450 |
Module590 | 7 | 32 | GO:0090329 | biological_process | regulation of DNA-dependent DNA replication | 0.003557924 | 1 | 16 |
Module590 | 7 | 33 | GO:0045787 | biological_process | positive regulation of cell cycle | 0.003557924 | 1 | 16 |
Module590 | 7 | 34 | GO:0005088 | molecular_function | Ras guanyl-nucleotide exchange factor activity | 0.003652964 | 1 | 15 |
Module590 | 7 | 35 | GO:0005089 | molecular_function | Rho guanyl-nucleotide exchange factor activity | 0.003652964 | 1 | 15 |
Module590 | 7 | 36 | GO:0009653 | biological_process | anatomical structure morphogenesis | 0.004595361 | 2 | 535 |
Module590 | 7 | 37 | GO:0006275 | biological_process | regulation of DNA replication | 0.005111859 | 1 | 23 |
Module590 | 7 | 38 | GO:0005783 | cellular_component | endoplasmic reticulum | 0.005982508 | 2 | 479 |
Module590 | 7 | 39 | GO:0005085 | molecular_function | guanyl-nucleotide exchange factor activity | 0.006082707 | 1 | 25 |
Module590 | 7 | 40 | GO:0042023 | biological_process | DNA endoreduplication | 0.006220822 | 1 | 28 |
Module590 | 7 | 41 | GO:0044786 | biological_process | cell cycle DNA replication | 0.006442516 | 1 | 29 |
Module590 | 7 | 42 | GO:0051052 | biological_process | regulation of DNA metabolic process | 0.006885804 | 1 | 31 |
Module590 | 7 | 43 | GO:0007165 | biological_process | signal transduction | 0.007738851 | 2 | 697 |
Module590 | 7 | 44 | GO:0023052 | biological_process | signaling | 0.007936481 | 2 | 706 |
Module590 | 7 | 45 | GO:0044700 | biological_process | single organism signaling | 0.007936481 | 2 | 706 |
Module590 | 7 | 46 | GO:0010564 | biological_process | regulation of cell cycle process | 0.008436276 | 1 | 38 |
Module590 | 7 | 47 | GO:0032535 | biological_process | regulation of cellular component size | 0.009100269 | 1 | 41 |
Module590 | 7 | 48 | GO:0090066 | biological_process | regulation of anatomical structure size | 0.009100269 | 1 | 41 |
Module590 | 7 | 49 | GO:0051302 | biological_process | regulation of cell division | 0.009542767 | 1 | 43 |
Module590 | 7 | 50 | GO:0009725 | biological_process | response to hormone | 0.0098961 | 2 | 790 |
Module590 | 7 | 51 | GO:0009719 | biological_process | response to endogenous stimulus | 0.010876069 | 2 | 829 |
Module590 | 7 | 52 | GO:0070013 | cellular_component | intracellular organelle lumen | 0.011431214 | 2 | 666 |
Module590 | 7 | 53 | GO:0043233 | cellular_component | organelle lumen | 0.011431214 | 2 | 666 |
Module590 | 7 | 54 | GO:0006261 | biological_process | DNA-dependent DNA replication | 0.011532376 | 1 | 52 |
Module590 | 7 | 55 | GO:0031974 | cellular_component | membrane-enclosed lumen | 0.011701519 | 2 | 674 |
Module590 | 7 | 56 | GO:0007154 | biological_process | cell communication | 0.011766376 | 2 | 863 |
Module590 | 7 | 57 | GO:0080147 | biological_process | root hair cell development | 0.012194987 | 1 | 55 |
Module590 | 7 | 58 | GO:0010033 | biological_process | response to organic substance | 0.014518246 | 2 | 961 |
Module590 | 7 | 59 | GO:0045935 | biological_process | positive regulation of nucleobase-containing compound metabolic process | 0.014622025 | 1 | 66 |
Module590 | 7 | 60 | GO:0048764 | biological_process | trichoblast maturation | 0.014842468 | 1 | 67 |
Module590 | 7 | 61 | GO:0048765 | biological_process | root hair cell differentiation | 0.014842468 | 1 | 67 |
Module590 | 7 | 62 | GO:0048469 | biological_process | cell maturation | 0.015062877 | 1 | 68 |
Module590 | 7 | 63 | GO:0010054 | biological_process | trichoblast differentiation | 0.015283254 | 1 | 69 |
Module590 | 7 | 64 | GO:0000910 | biological_process | cytokinesis | 0.015283254 | 1 | 69 |
Module590 | 7 | 65 | GO:0010557 | biological_process | positive regulation of macromolecule biosynthetic process | 0.016384645 | 1 | 74 |
Module590 | 7 | 66 | GO:0031328 | biological_process | positive regulation of cellular biosynthetic process | 0.016824971 | 1 | 76 |
Module590 | 7 | 67 | GO:0051173 | biological_process | positive regulation of nitrogen compound metabolic process | 0.017265166 | 1 | 78 |
Module590 | 7 | 68 | GO:0009891 | biological_process | positive regulation of biosynthetic process | 0.017265166 | 1 | 78 |
Module590 | 7 | 69 | GO:0009860 | biological_process | pollen tube growth | 0.017925211 | 1 | 81 |
Module590 | 7 | 70 | GO:0010053 | biological_process | root epidermal cell differentiation | 0.018145161 | 1 | 82 |
Module590 | 7 | 71 | GO:0090627 | biological_process | plant epidermal cell differentiation | 0.018584961 | 1 | 84 |
Module590 | 7 | 72 | GO:0051716 | biological_process | cellular response to stimulus | 0.020555101 | 2 | 1149 |
Module590 | 7 | 73 | GO:0010604 | biological_process | positive regulation of macromolecule metabolic process | 0.021221007 | 1 | 96 |
Module590 | 7 | 74 | GO:0021700 | biological_process | developmental maturation | 0.02187928 | 1 | 99 |
Module590 | 7 | 75 | GO:0009932 | biological_process | cell tip growth | 0.022537258 | 1 | 102 |
Module590 | 7 | 76 | GO:0051726 | biological_process | regulation of cell cycle | 0.022537258 | 1 | 102 |
Module590 | 7 | 77 | GO:0031325 | biological_process | positive regulation of cellular metabolic process | 0.023194941 | 1 | 105 |
Module590 | 7 | 78 | GO:0048868 | biological_process | pollen tube development | 0.024947319 | 1 | 113 |
Module590 | 7 | 79 | GO:0016043 | biological_process | cellular component organization | 0.026223497 | 2 | 1303 |
Module590 | 7 | 80 | GO:0048588 | biological_process | developmental cell growth | 0.026260227 | 1 | 119 |
Module590 | 7 | 81 | GO:0012505 | cellular_component | endomembrane system | 0.028943707 | 2 | 1074 |
Module590 | 7 | 82 | GO:0006260 | biological_process | DNA replication | 0.029537338 | 1 | 134 |
Module590 | 7 | 83 | GO:0048856 | biological_process | anatomical structure development | 0.030368605 | 2 | 1406 |
Module590 | 7 | 84 | GO:0009893 | biological_process | positive regulation of metabolic process | 0.030628072 | 1 | 139 |
Module590 | 7 | 85 | GO:0000904 | biological_process | cell morphogenesis involved in differentiation | 0.03128212 | 1 | 142 |
Module590 | 7 | 86 | GO:0071840 | biological_process | cellular component organization or biogenesis | 0.031585959 | 2 | 1435 |
Module590 | 7 | 87 | GO:0010015 | biological_process | root morphogenesis | 0.031717989 | 1 | 144 |
Module590 | 7 | 88 | GO:0090558 | biological_process | plant epidermis development | 0.034765408 | 1 | 158 |
Module590 | 7 | 89 | GO:0044767 | biological_process | single-organism developmental process | 0.036085646 | 2 | 1538 |
Module590 | 7 | 90 | GO:0051301 | biological_process | cell division | 0.037806427 | 1 | 172 |
Module590 | 7 | 91 | GO:0032502 | biological_process | developmental process | 0.038136772 | 2 | 1583 |
Module590 | 7 | 92 | GO:0009856 | biological_process | pollination | 0.038457242 | 1 | 175 |
Module590 | 7 | 93 | GO:0044706 | biological_process | multi-multicellular organism process | 0.038457242 | 1 | 175 |
Module590 | 7 | 94 | GO:0022402 | biological_process | cell cycle process | 0.039974668 | 1 | 182 |
Module590 | 7 | 95 | GO:0048522 | biological_process | positive regulation of cellular process | 0.041057567 | 1 | 187 |
Module590 | 7 | 96 | GO:0048468 | biological_process | cell development | 0.042572255 | 1 | 194 |
Module590 | 7 | 97 | GO:0042221 | biological_process | response to chemical | 0.042780215 | 2 | 1681 |
Module590 | 7 | 98 | GO:0008270 | molecular_function | zinc ion binding | 0.044684541 | 2 | 1508 |
Module590 | 7 | 99 | GO:0009793 | biological_process | embryo development ending in seed dormancy | 0.045596846 | 1 | 208 |
Module590 | 7 | 100 | GO:0044763 | biological_process | single-organism cellular process | 0.046310613 | 3 | 4840 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
GRMZM2G076802 | GRMZM2G078508 | 0.0463 |
GRMZM2G076802 | GRMZM2G079468 | 0.0394 |
GRMZM2G076802 | GRMZM2G359664 | 0.0357 |
GRMZM2G076802 | GRMZM6G820695 | 0.0355 |
GRMZM2G078508 | abp4 | 0.0801 |
GRMZM2G078508 | GRMZM2G322634 | 0.035 |