This page contains information for Module593, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
GRMZM2G085019 | me3 | Module593 | AT1G79750 | NADP-ME4 | NADP-malic enzyme 4 | NADP-malic enzyme 4 | |
GRMZM2G001696 | pck1 | Module593 | AT4G37870 | PCK1 | phosphoenolpyruvate carboxykinase 1 | phosphoenolpyruvate carboxykinase 1 | |
GRMZM2G086258 | dct2 | Module593 | AT5G64290 | DIT2.1 | dicarboxylate transport 2.1 | dicarboxylate transport 2.1 | |
GRMZM2G058261 | Module593 | AT1G56000 | AT1G56000 | FAD/NAD(P)-binding oxidoreductase family protein | |||
GRMZM2G095287 | Module593 | AT5G64380 | AT5G64380 | Inositol monophosphatase family protein | |||
GRMZM2G138258 | Module593 | AT5G12470 | AT5G12470 | Protein of unknown function (DUF3411) | |||
GRMZM2G306345 | pdk1 | Module593 | AT4G15530 | PPDK | pyruvate orthophosphate dikinase | pyruvate orthophosphate dikinase |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module593 | 7 | 1 | GO:0043648 | biological_process | dicarboxylic acid metabolic process | 0.00026331 | 2 | 70 |
Module593 | 7 | 2 | GO:0044281 | biological_process | small molecule metabolic process | 0.00066475 | 4 | 1482 |
Module593 | 7 | 3 | GO:0050242 | molecular_function | pyruvate, phosphate dikinase activity | 0.000731417 | 1 | 2 |
Module593 | 7 | 4 | GO:0015131 | molecular_function | oxaloacetate transmembrane transporter activity | 0.000731417 | 1 | 2 |
Module593 | 7 | 5 | GO:0015729 | biological_process | oxaloacetate transport | 0.00074195 | 1 | 2 |
Module593 | 7 | 6 | GO:0016781 | molecular_function | phosphotransferase activity, paired acceptors | 0.001096959 | 1 | 3 |
Module593 | 7 | 7 | GO:0019676 | biological_process | ammonia assimilation cycle | 0.00111276 | 1 | 3 |
Module593 | 7 | 8 | GO:0009507 | cellular_component | chloroplast | 0.001328523 | 5 | 2032 |
Module593 | 7 | 9 | GO:0004473 | molecular_function | malate dehydrogenase (decarboxylating) (NADP+) activity | 0.001462389 | 1 | 4 |
Module593 | 7 | 10 | GO:0005313 | molecular_function | L-glutamate transmembrane transporter activity | 0.001462389 | 1 | 4 |
Module593 | 7 | 11 | GO:0015813 | biological_process | L-glutamate transport | 0.001483459 | 1 | 4 |
Module593 | 7 | 12 | GO:0044434 | cellular_component | chloroplast part | 0.001571333 | 4 | 1117 |
Module593 | 7 | 13 | GO:0044435 | cellular_component | plastid part | 0.001670266 | 4 | 1135 |
Module593 | 7 | 14 | GO:0009536 | cellular_component | plastid | 0.001707918 | 5 | 2141 |
Module593 | 7 | 15 | GO:0004612 | molecular_function | phosphoenolpyruvate carboxykinase (ATP) activity | 0.001827708 | 1 | 5 |
Module593 | 7 | 16 | GO:0042132 | molecular_function | fructose 1,6-bisphosphate 1-phosphatase activity | 0.001827708 | 1 | 5 |
Module593 | 7 | 17 | GO:0015140 | molecular_function | malate transmembrane transporter activity | 0.001827708 | 1 | 5 |
Module593 | 7 | 18 | GO:0071423 | biological_process | malate transmembrane transport | 0.001854049 | 1 | 5 |
Module593 | 7 | 19 | GO:0015807 | biological_process | L-amino acid transport | 0.001854049 | 1 | 5 |
Module593 | 7 | 20 | GO:0015556 | molecular_function | C4-dicarboxylate transmembrane transporter activity | 0.002192915 | 1 | 6 |
Module593 | 7 | 21 | GO:0015172 | molecular_function | acidic amino acid transmembrane transporter activity | 0.002192915 | 1 | 6 |
Module593 | 7 | 22 | GO:0051289 | biological_process | protein homotetramerization | 0.002594898 | 1 | 7 |
Module593 | 7 | 23 | GO:0015800 | biological_process | acidic amino acid transport | 0.002594898 | 1 | 7 |
Module593 | 7 | 24 | GO:0019752 | biological_process | carboxylic acid metabolic process | 0.002839193 | 3 | 918 |
Module593 | 7 | 25 | GO:0004470 | molecular_function | malic enzyme activity | 0.002922995 | 1 | 8 |
Module593 | 7 | 26 | GO:0015179 | molecular_function | L-amino acid transmembrane transporter activity | 0.002922995 | 1 | 8 |
Module593 | 7 | 27 | GO:0043436 | biological_process | oxoacid metabolic process | 0.002984829 | 3 | 934 |
Module593 | 7 | 28 | GO:0006082 | biological_process | organic acid metabolic process | 0.003003362 | 3 | 936 |
Module593 | 7 | 29 | GO:0051262 | biological_process | protein tetramerization | 0.003335307 | 1 | 9 |
Module593 | 7 | 30 | GO:0005310 | molecular_function | dicarboxylic acid transmembrane transporter activity | 0.004017281 | 1 | 11 |
Module593 | 7 | 31 | GO:0015743 | biological_process | malate transport | 0.004075276 | 1 | 11 |
Module593 | 7 | 32 | GO:0050308 | molecular_function | sugar-phosphatase activity | 0.004381821 | 1 | 12 |
Module593 | 7 | 33 | GO:0051260 | biological_process | protein homooligomerization | 0.004814806 | 1 | 13 |
Module593 | 7 | 34 | GO:0015740 | biological_process | C4-dicarboxylate transport | 0.004814806 | 1 | 13 |
Module593 | 7 | 35 | GO:0004611 | molecular_function | phosphoenolpyruvate carboxykinase activity | 0.005110566 | 1 | 14 |
Module593 | 7 | 36 | GO:0006094 | biological_process | gluconeogenesis | 0.005184406 | 1 | 14 |
Module593 | 7 | 37 | GO:0016829 | molecular_function | lyase activity | 0.005402732 | 2 | 320 |
Module593 | 7 | 38 | GO:0006541 | biological_process | glutamine metabolic process | 0.006292547 | 1 | 17 |
Module593 | 7 | 39 | GO:0019203 | molecular_function | carbohydrate phosphatase activity | 0.006566724 | 1 | 18 |
Module593 | 7 | 40 | GO:0016615 | molecular_function | malate dehydrogenase activity | 0.006566724 | 1 | 18 |
Module593 | 7 | 41 | GO:0019319 | biological_process | hexose biosynthetic process | 0.006661708 | 1 | 18 |
Module593 | 7 | 42 | GO:0006108 | biological_process | malate metabolic process | 0.006661708 | 1 | 18 |
Module593 | 7 | 43 | GO:0006536 | biological_process | glutamate metabolic process | 0.006661708 | 1 | 18 |
Module593 | 7 | 44 | GO:0006814 | biological_process | sodium ion transport | 0.00703076 | 1 | 19 |
Module593 | 7 | 45 | GO:0051259 | biological_process | protein oligomerization | 0.007768533 | 1 | 21 |
Module593 | 7 | 46 | GO:0006835 | biological_process | dicarboxylic acid transport | 0.008505868 | 1 | 23 |
Module593 | 7 | 47 | GO:0044446 | cellular_component | intracellular organelle part | 0.009238054 | 5 | 3055 |
Module593 | 7 | 48 | GO:0044422 | cellular_component | organelle part | 0.009309102 | 5 | 3060 |
Module593 | 7 | 49 | GO:0046686 | biological_process | response to cadmium ion | 0.009657689 | 2 | 433 |
Module593 | 7 | 50 | GO:0046364 | biological_process | monosaccharide biosynthetic process | 0.011083088 | 1 | 30 |
Module593 | 7 | 51 | GO:0015171 | molecular_function | amino acid transmembrane transporter activity | 0.011286976 | 1 | 31 |
Module593 | 7 | 52 | GO:1903825 | biological_process | organic acid transmembrane transport | 0.013654947 | 1 | 37 |
Module593 | 7 | 53 | GO:0010038 | biological_process | response to metal ion | 0.013701127 | 2 | 519 |
Module593 | 7 | 54 | GO:0006006 | biological_process | glucose metabolic process | 0.01438878 | 1 | 39 |
Module593 | 7 | 55 | GO:0006865 | biological_process | amino acid transport | 0.015855136 | 1 | 43 |
Module593 | 7 | 56 | GO:0009817 | biological_process | defense response to fungus, incompatible interaction | 0.015855136 | 1 | 43 |
Module593 | 7 | 57 | GO:0043207 | biological_process | response to external biotic stimulus | 0.01792036 | 2 | 597 |
Module593 | 7 | 58 | GO:0051707 | biological_process | response to other organism | 0.01792036 | 2 | 597 |
Module593 | 7 | 59 | GO:0044444 | cellular_component | cytoplasmic part | 0.018167886 | 6 | 5412 |
Module593 | 7 | 60 | GO:0009064 | biological_process | glutamine family amino acid metabolic process | 0.018782612 | 1 | 51 |
Module593 | 7 | 61 | GO:0005342 | molecular_function | organic acid transmembrane transporter activity | 0.018872511 | 1 | 52 |
Module593 | 7 | 62 | GO:0046943 | molecular_function | carboxylic acid transmembrane transporter activity | 0.018872511 | 1 | 52 |
Module593 | 7 | 63 | GO:0009607 | biological_process | response to biotic stimulus | 0.019261587 | 2 | 620 |
Module593 | 7 | 64 | GO:0016036 | biological_process | cellular response to phosphate starvation | 0.020243735 | 1 | 55 |
Module593 | 7 | 65 | GO:0098656 | biological_process | anion transmembrane transport | 0.022432155 | 1 | 61 |
Module593 | 7 | 66 | GO:0050897 | molecular_function | cobalt ion binding | 0.023185284 | 1 | 64 |
Module593 | 7 | 67 | GO:0009706 | cellular_component | chloroplast inner membrane | 0.023648675 | 1 | 42 |
Module593 | 7 | 68 | GO:0044710 | biological_process | single-organism metabolic process | 0.024506673 | 4 | 3802 |
Module593 | 7 | 69 | GO:0009528 | cellular_component | plastid inner membrane | 0.024763072 | 1 | 44 |
Module593 | 7 | 70 | GO:0008514 | molecular_function | organic anion transmembrane transporter activity | 0.02605168 | 1 | 72 |
Module593 | 7 | 71 | GO:0046942 | biological_process | carboxylic acid transport | 0.026434103 | 1 | 72 |
Module593 | 7 | 72 | GO:0015849 | biological_process | organic acid transport | 0.026434103 | 1 | 72 |
Module593 | 7 | 73 | GO:0051287 | molecular_function | NAD binding | 0.026767183 | 1 | 74 |
Module593 | 7 | 74 | GO:0019318 | biological_process | hexose metabolic process | 0.027886102 | 1 | 76 |
Module593 | 7 | 75 | GO:0042803 | molecular_function | protein homodimerization activity | 0.028554024 | 1 | 79 |
Module593 | 7 | 76 | GO:0016831 | molecular_function | carboxy-lyase activity | 0.028554024 | 1 | 79 |
Module593 | 7 | 77 | GO:0005829 | cellular_component | cytosol | 0.029207382 | 3 | 1321 |
Module593 | 7 | 78 | GO:0009267 | biological_process | cellular response to starvation | 0.029336369 | 1 | 80 |
Module593 | 7 | 79 | GO:0005737 | cellular_component | cytoplasm | 0.030504884 | 6 | 5900 |
Module593 | 7 | 80 | GO:0042594 | biological_process | response to starvation | 0.031508523 | 1 | 86 |
Module593 | 7 | 81 | GO:0009605 | biological_process | response to external stimulus | 0.032246523 | 2 | 814 |
Module593 | 7 | 82 | GO:0009624 | biological_process | response to nematode | 0.032593141 | 1 | 89 |
Module593 | 7 | 83 | GO:0031669 | biological_process | cellular response to nutrient levels | 0.033315679 | 1 | 91 |
Module593 | 7 | 84 | GO:0010035 | biological_process | response to inorganic substance | 0.03336999 | 2 | 829 |
Module593 | 7 | 85 | GO:0006090 | biological_process | pyruvate metabolic process | 0.034398677 | 1 | 94 |
Module593 | 7 | 86 | GO:0009941 | cellular_component | chloroplast envelope | 0.034764361 | 2 | 545 |
Module593 | 7 | 87 | GO:0009526 | cellular_component | plastid envelope | 0.037539709 | 2 | 568 |
Module593 | 7 | 88 | GO:0031667 | biological_process | response to nutrient levels | 0.03764185 | 1 | 103 |
Module593 | 7 | 89 | GO:0015711 | biological_process | organic anion transport | 0.038720968 | 1 | 106 |
Module593 | 7 | 90 | GO:0051704 | biological_process | multi-organism process | 0.039150759 | 2 | 903 |
Module593 | 7 | 91 | GO:0043231 | cellular_component | intracellular membrane-bounded organelle | 0.03971031 | 6 | 6165 |
Module593 | 7 | 92 | GO:0043227 | cellular_component | membrane-bounded organelle | 0.039748989 | 6 | 6166 |
Module593 | 7 | 93 | GO:0005996 | biological_process | monosaccharide metabolic process | 0.040517348 | 1 | 111 |
Module593 | 7 | 94 | GO:0009570 | cellular_component | chloroplast stroma | 0.042446517 | 2 | 607 |
Module593 | 7 | 95 | GO:0031969 | cellular_component | chloroplast membrane | 0.042449792 | 1 | 76 |
Module593 | 7 | 96 | GO:0009814 | biological_process | defense response, incompatible interaction | 0.042669458 | 1 | 117 |
Module593 | 7 | 97 | GO:0031668 | biological_process | cellular response to extracellular stimulus | 0.043027767 | 1 | 118 |
Module593 | 7 | 98 | GO:0005975 | biological_process | carbohydrate metabolic process | 0.043359564 | 2 | 954 |
Module593 | 7 | 99 | GO:0071496 | biological_process | cellular response to external stimulus | 0.043385969 | 1 | 119 |
Module593 | 7 | 100 | GO:0016830 | molecular_function | carbon-carbon lyase activity | 0.043455846 | 1 | 121 |
Module593 | 7 | 101 | GO:0009532 | cellular_component | plastid stroma | 0.04439938 | 2 | 622 |
Module593 | 7 | 102 | GO:0008509 | molecular_function | anion transmembrane transporter activity | 0.045569041 | 1 | 127 |
Module593 | 7 | 103 | GO:0042170 | cellular_component | plastid membrane | 0.047375732 | 1 | 85 |
Module593 | 7 | 104 | GO:0009991 | biological_process | response to extracellular stimulus | 0.047676032 | 1 | 131 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
me3 | pck1 | 0.0358 |
me3 | GRMZM2G138258 | 0.0362 |
pck1 | GRMZM2G138258 | 0.0446 |
dct2 | GRMZM2G058261 | 0.0385 |
dct2 | GRMZM2G095287 | 0.0392 |
dct2 | GRMZM2G138258 | 0.0475 |
GRMZM2G138258 | pdk1 | 0.0453 |