This page contains information for Module631, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
GRMZM2G181073 | Module631 | AT4G37210 | AT4G37210 | Tetratricopeptide repeat (TPR)-like superfamily protein | |||
GRMZM2G138829 | Module631 | ||||||
GRMZM2G373527 | Module631 | ||||||
GRMZM2G446253 | Module631 | AT2G36530 | LOS2 | LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2 | Enolase | ||
GRMZM2G529822 | Module631 | ||||||
GRMZM5G833998 | Module631 | ||||||
GRMZM5G834171 | Module631 |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module631 | 7 | 1 | GO:0004634 | molecular_function | phosphopyruvate hydratase activity | 0.000548647 | 1 | 9 |
Module631 | 7 | 2 | GO:0000015 | cellular_component | phosphopyruvate hydratase complex | 0.000852838 | 1 | 9 |
Module631 | 7 | 3 | GO:0016836 | molecular_function | hydro-lyase activity | 0.004450134 | 1 | 73 |
Module631 | 7 | 4 | GO:0006096 | biological_process | glycolytic process | 0.006084892 | 1 | 82 |
Module631 | 7 | 5 | GO:0009185 | biological_process | ribonucleoside diphosphate metabolic process | 0.006084892 | 1 | 82 |
Module631 | 7 | 6 | GO:0009179 | biological_process | purine ribonucleoside diphosphate metabolic process | 0.006084892 | 1 | 82 |
Module631 | 7 | 7 | GO:0009135 | biological_process | purine nucleoside diphosphate metabolic process | 0.006084892 | 1 | 82 |
Module631 | 7 | 8 | GO:0006757 | biological_process | ATP generation from ADP | 0.006084892 | 1 | 82 |
Module631 | 7 | 9 | GO:0046031 | biological_process | ADP metabolic process | 0.006084892 | 1 | 82 |
Module631 | 7 | 10 | GO:0006165 | biological_process | nucleoside diphosphate phosphorylation | 0.006752746 | 1 | 91 |
Module631 | 7 | 11 | GO:0006090 | biological_process | pyruvate metabolic process | 0.006975364 | 1 | 94 |
Module631 | 7 | 12 | GO:0009132 | biological_process | nucleoside diphosphate metabolic process | 0.00704957 | 1 | 95 |
Module631 | 7 | 13 | GO:0044724 | biological_process | single-organism carbohydrate catabolic process | 0.007569012 | 1 | 102 |
Module631 | 7 | 14 | GO:0046939 | biological_process | nucleotide phosphorylation | 0.007643218 | 1 | 103 |
Module631 | 7 | 15 | GO:0016835 | molecular_function | carbon-oxygen lyase activity | 0.007742014 | 1 | 127 |
Module631 | 7 | 16 | GO:0000287 | molecular_function | magnesium ion binding | 0.008107779 | 1 | 133 |
Module631 | 7 | 17 | GO:0046496 | biological_process | nicotinamide nucleotide metabolic process | 0.009869397 | 1 | 133 |
Module631 | 7 | 18 | GO:0019362 | biological_process | pyridine nucleotide metabolic process | 0.010017809 | 1 | 135 |
Module631 | 7 | 19 | GO:0016052 | biological_process | carbohydrate catabolic process | 0.010463045 | 1 | 141 |
Module631 | 7 | 20 | GO:0072524 | biological_process | pyridine-containing compound metabolic process | 0.010537251 | 1 | 142 |
Module631 | 7 | 21 | GO:0006733 | biological_process | oxidoreduction coenzyme metabolic process | 0.010611457 | 1 | 143 |
Module631 | 7 | 22 | GO:0046034 | biological_process | ATP metabolic process | 0.012837637 | 1 | 173 |
Module631 | 7 | 23 | GO:0009144 | biological_process | purine nucleoside triphosphate metabolic process | 0.013505491 | 1 | 182 |
Module631 | 7 | 24 | GO:0009205 | biological_process | purine ribonucleoside triphosphate metabolic process | 0.013505491 | 1 | 182 |
Module631 | 7 | 25 | GO:0009199 | biological_process | ribonucleoside triphosphate metabolic process | 0.013653903 | 1 | 184 |
Module631 | 7 | 26 | GO:0009141 | biological_process | nucleoside triphosphate metabolic process | 0.013876521 | 1 | 187 |
Module631 | 7 | 27 | GO:0009167 | biological_process | purine ribonucleoside monophosphate metabolic process | 0.014321757 | 1 | 193 |
Module631 | 7 | 28 | GO:0009126 | biological_process | purine nucleoside monophosphate metabolic process | 0.014321757 | 1 | 193 |
Module631 | 7 | 29 | GO:0009161 | biological_process | ribonucleoside monophosphate metabolic process | 0.014989611 | 1 | 202 |
Module631 | 7 | 30 | GO:0009123 | biological_process | nucleoside monophosphate metabolic process | 0.015212229 | 1 | 205 |
Module631 | 7 | 31 | GO:0005507 | molecular_function | copper ion binding | 0.016398439 | 1 | 269 |
Module631 | 7 | 32 | GO:0009150 | biological_process | purine ribonucleotide metabolic process | 0.016993173 | 1 | 229 |
Module631 | 7 | 33 | GO:0046128 | biological_process | purine ribonucleoside metabolic process | 0.017067379 | 1 | 230 |
Module631 | 7 | 34 | GO:0042278 | biological_process | purine nucleoside metabolic process | 0.017141585 | 1 | 231 |
Module631 | 7 | 35 | GO:0006163 | biological_process | purine nucleotide metabolic process | 0.017661027 | 1 | 238 |
Module631 | 7 | 36 | GO:0009259 | biological_process | ribonucleotide metabolic process | 0.017735233 | 1 | 239 |
Module631 | 7 | 37 | GO:0006732 | biological_process | coenzyme metabolic process | 0.018106263 | 1 | 244 |
Module631 | 7 | 38 | GO:0009119 | biological_process | ribonucleoside metabolic process | 0.018328881 | 1 | 247 |
Module631 | 7 | 39 | GO:0016829 | molecular_function | lyase activity | 0.019507437 | 1 | 320 |
Module631 | 7 | 40 | GO:0009116 | biological_process | nucleoside metabolic process | 0.019516177 | 1 | 263 |
Module631 | 7 | 41 | GO:0019693 | biological_process | ribose phosphate metabolic process | 0.019961413 | 1 | 269 |
Module631 | 7 | 42 | GO:0072521 | biological_process | purine-containing compound metabolic process | 0.020035619 | 1 | 270 |
Module631 | 7 | 43 | GO:0005740 | cellular_component | mitochondrial envelope | 0.020089074 | 1 | 212 |
Module631 | 7 | 44 | GO:1901657 | biological_process | glycosyl compound metabolic process | 0.021074503 | 1 | 284 |
Module631 | 7 | 45 | GO:0044712 | biological_process | single-organism catabolic process | 0.021668151 | 1 | 292 |
Module631 | 7 | 46 | GO:0009409 | biological_process | response to cold | 0.022781241 | 1 | 307 |
Module631 | 7 | 47 | GO:0051186 | biological_process | cofactor metabolic process | 0.023745919 | 1 | 320 |
Module631 | 7 | 48 | GO:0009117 | biological_process | nucleotide metabolic process | 0.024487979 | 1 | 330 |
Module631 | 7 | 49 | GO:0044429 | cellular_component | mitochondrial part | 0.024542784 | 1 | 259 |
Module631 | 7 | 50 | GO:0006753 | biological_process | nucleoside phosphate metabolic process | 0.025081627 | 1 | 338 |
Module631 | 7 | 51 | GO:0006091 | biological_process | generation of precursor metabolites and energy | 0.025155833 | 1 | 339 |
Module631 | 7 | 52 | GO:0009737 | biological_process | response to abscisic acid | 0.026639953 | 1 | 359 |
Module631 | 7 | 53 | GO:0055086 | biological_process | nucleobase-containing small molecule metabolic process | 0.028643514 | 1 | 386 |
Module631 | 7 | 54 | GO:0097305 | biological_process | response to alcohol | 0.030276046 | 1 | 408 |
Module631 | 7 | 55 | GO:0032787 | biological_process | monocarboxylic acid metabolic process | 0.030498664 | 1 | 411 |
Module631 | 7 | 56 | GO:0046686 | biological_process | response to cadmium ion | 0.032131196 | 1 | 433 |
Module631 | 7 | 57 | GO:0044445 | cellular_component | cytosolic part | 0.032786885 | 1 | 346 |
Module631 | 7 | 58 | GO:0033993 | biological_process | response to lipid | 0.033095874 | 1 | 446 |
Module631 | 7 | 59 | GO:0009266 | biological_process | response to temperature stimulus | 0.03317008 | 1 | 447 |
Module631 | 7 | 60 | GO:0048046 | cellular_component | apoplast | 0.033734483 | 1 | 356 |
Module631 | 7 | 61 | GO:0009416 | biological_process | response to light stimulus | 0.034357376 | 1 | 463 |
Module631 | 7 | 62 | GO:0009651 | biological_process | response to salt stress | 0.035173642 | 1 | 474 |
Module631 | 7 | 63 | GO:0009314 | biological_process | response to radiation | 0.03539626 | 1 | 477 |
Module631 | 7 | 64 | GO:0044723 | biological_process | single-organism carbohydrate metabolic process | 0.038290294 | 1 | 516 |
Module631 | 7 | 65 | GO:0006970 | biological_process | response to osmotic stress | 0.0383645 | 1 | 517 |
Module631 | 7 | 66 | GO:0010038 | biological_process | response to metal ion | 0.038512912 | 1 | 519 |
Module631 | 7 | 67 | GO:1901135 | biological_process | carbohydrate derivative metabolic process | 0.038661324 | 1 | 521 |
Module631 | 7 | 68 | GO:0019637 | biological_process | organophosphate metabolic process | 0.040071238 | 1 | 540 |
Module631 | 7 | 69 | GO:1902494 | cellular_component | catalytic complex | 0.040841467 | 1 | 431 |
Module631 | 7 | 70 | GO:1901575 | biological_process | organic substance catabolic process | 0.044672009 | 1 | 602 |
Module631 | 7 | 71 | GO:0009056 | biological_process | catabolic process | 0.048233897 | 1 | 650 |
Module631 | 7 | 72 | GO:0009506 | cellular_component | plasmodesma | 0.049275088 | 1 | 520 |
Module631 | 7 | 73 | GO:0055044 | cellular_component | symplast | 0.049275088 | 1 | 520 |
Module631 | 7 | 74 | GO:0005911 | cellular_component | cell-cell junction | 0.049275088 | 1 | 520 |
Module631 | 7 | 75 | GO:0030054 | cellular_component | cell junction | 0.049275088 | 1 | 520 |
Module631 | 7 | 76 | GO:0005576 | cellular_component | extracellular region | 0.049559367 | 1 | 523 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
GRMZM2G181073 | GRMZM2G138829 | 0.05 |
GRMZM2G181073 | GRMZM5G834171 | 0.0523 |
GRMZM2G138829 | GRMZM2G529822 | 0.0447 |
GRMZM2G373527 | GRMZM5G834171 | 0.0431 |
GRMZM2G446253 | GRMZM2G529822 | 0.0351 |
GRMZM2G529822 | GRMZM5G833998 | 0.047 |