This page contains information for Module683, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
GRMZM2G042250 | rld2 | Module683 | AT5G60690 | REV | REVOLUTA | Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein | HB |
GRMZM2G023291 | hb124 | Module683 | AT2G34710 | PHB | PHABULOSA | Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein | HB |
GRMZM2G109987 | rld1 | Module683 | AT5G60690 | REV | REVOLUTA | Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein | HB |
GRMZM2G178102 | hb25 | Module683 | AT2G34710 | PHB | PHABULOSA | Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein | HB |
GRMZM2G003509 | hb119 | Module683 | AT2G34710 | PHB | PHABULOSA | Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein | HB |
GRMZM2G423337 | Module683 | AT2G34710 | PHB | PHABULOSA | Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein | HB |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module683 | 6 | 1 | GO:0009855 | biological_process | determination of bilateral symmetry | 3.82E-13 | 4 | 7 |
Module683 | 6 | 2 | GO:0009799 | biological_process | specification of symmetry | 7.64E-13 | 4 | 8 |
Module683 | 6 | 3 | GO:0009943 | biological_process | adaxial/abaxial axis specification | 5.40E-12 | 4 | 12 |
Module683 | 6 | 4 | GO:0009944 | biological_process | polarity specification of adaxial/abaxial axis | 5.40E-12 | 4 | 12 |
Module683 | 6 | 5 | GO:0065001 | biological_process | specification of axis polarity | 7.80E-12 | 4 | 13 |
Module683 | 6 | 6 | GO:0009798 | biological_process | axis specification | 5.28E-11 | 4 | 20 |
Module683 | 6 | 7 | GO:0010014 | biological_process | meristem initiation | 5.28E-11 | 4 | 20 |
Module683 | 6 | 8 | GO:0009955 | biological_process | adaxial/abaxial pattern specification | 1.38E-10 | 4 | 25 |
Module683 | 6 | 9 | GO:0080060 | biological_process | integument development | 1.96E-10 | 3 | 4 |
Module683 | 6 | 10 | GO:0009933 | biological_process | meristem structural organization | 1.94E-09 | 4 | 47 |
Module683 | 6 | 11 | GO:0048532 | biological_process | anatomical structure arrangement | 2.30E-09 | 4 | 49 |
Module683 | 6 | 12 | GO:0010072 | biological_process | primary shoot apical meristem specification | 8.08E-09 | 3 | 11 |
Module683 | 6 | 13 | GO:0090421 | biological_process | embryonic meristem initiation | 2.74E-08 | 3 | 16 |
Module683 | 6 | 14 | GO:0009880 | biological_process | embryonic pattern specification | 2.74E-08 | 3 | 16 |
Module683 | 6 | 15 | GO:0048508 | biological_process | embryonic meristem development | 6.50E-08 | 3 | 21 |
Module683 | 6 | 16 | GO:0003002 | biological_process | regionalization | 6.94E-08 | 4 | 113 |
Module683 | 6 | 17 | GO:0043565 | molecular_function | sequence-specific DNA binding | 9.95E-08 | 5 | 460 |
Module683 | 6 | 18 | GO:0007389 | biological_process | pattern specification process | 1.18E-07 | 4 | 129 |
Module683 | 6 | 19 | GO:0048507 | biological_process | meristem development | 1.55E-07 | 4 | 138 |
Module683 | 6 | 20 | GO:0048481 | biological_process | plant ovule development | 5.59E-07 | 3 | 42 |
Module683 | 6 | 21 | GO:0035670 | biological_process | plant-type ovary development | 5.59E-07 | 3 | 42 |
Module683 | 6 | 22 | GO:0003700 | molecular_function | transcription factor activity, sequence-specific DNA binding | 7.15E-07 | 5 | 683 |
Module683 | 6 | 23 | GO:0001071 | molecular_function | nucleic acid binding transcription factor activity | 7.20E-07 | 5 | 684 |
Module683 | 6 | 24 | GO:0048440 | biological_process | carpel development | 1.14E-06 | 3 | 53 |
Module683 | 6 | 25 | GO:0048467 | biological_process | gynoecium development | 1.84E-06 | 3 | 62 |
Module683 | 6 | 26 | GO:0009888 | biological_process | tissue development | 5.87E-06 | 4 | 342 |
Module683 | 6 | 27 | GO:0048438 | biological_process | floral whorl development | 1.13E-05 | 3 | 113 |
Module683 | 6 | 28 | GO:0010016 | biological_process | shoot system morphogenesis | 1.16E-05 | 3 | 114 |
Module683 | 6 | 29 | GO:0048437 | biological_process | floral organ development | 1.72E-05 | 3 | 130 |
Module683 | 6 | 30 | GO:0050794 | biological_process | regulation of cellular process | 3.03E-05 | 6 | 2381 |
Module683 | 6 | 31 | GO:0009653 | biological_process | anatomical structure morphogenesis | 3.46E-05 | 4 | 535 |
Module683 | 6 | 32 | GO:2001141 | biological_process | regulation of RNA biosynthetic process | 4.46E-05 | 5 | 1293 |
Module683 | 6 | 33 | GO:0006355 | biological_process | regulation of transcription, DNA-templated | 4.46E-05 | 5 | 1293 |
Module683 | 6 | 34 | GO:1903506 | biological_process | regulation of nucleic acid-templated transcription | 4.46E-05 | 5 | 1293 |
Module683 | 6 | 35 | GO:0051252 | biological_process | regulation of RNA metabolic process | 4.65E-05 | 5 | 1304 |
Module683 | 6 | 36 | GO:0019219 | biological_process | regulation of nucleobase-containing compound metabolic process | 5.18E-05 | 5 | 1333 |
Module683 | 6 | 37 | GO:0010556 | biological_process | regulation of macromolecule biosynthetic process | 6.01E-05 | 5 | 1374 |
Module683 | 6 | 38 | GO:2000112 | biological_process | regulation of cellular macromolecule biosynthetic process | 6.01E-05 | 5 | 1374 |
Module683 | 6 | 39 | GO:0031326 | biological_process | regulation of cellular biosynthetic process | 6.76E-05 | 5 | 1407 |
Module683 | 6 | 40 | GO:0051171 | biological_process | regulation of nitrogen compound metabolic process | 6.80E-05 | 5 | 1409 |
Module683 | 6 | 41 | GO:0010468 | biological_process | regulation of gene expression | 6.92E-05 | 5 | 1414 |
Module683 | 6 | 42 | GO:0097659 | biological_process | nucleic acid-templated transcription | 6.92E-05 | 5 | 1414 |
Module683 | 6 | 43 | GO:0006351 | biological_process | transcription, DNA-templated | 6.92E-05 | 5 | 1414 |
Module683 | 6 | 44 | GO:0009793 | biological_process | embryo development ending in seed dormancy | 7.00E-05 | 3 | 208 |
Module683 | 6 | 45 | GO:0032774 | biological_process | RNA biosynthetic process | 7.04E-05 | 5 | 1419 |
Module683 | 6 | 46 | GO:0009889 | biological_process | regulation of biosynthetic process | 7.12E-05 | 5 | 1422 |
Module683 | 6 | 47 | GO:0050789 | biological_process | regulation of biological process | 7.21E-05 | 6 | 2751 |
Module683 | 6 | 48 | GO:0080090 | biological_process | regulation of primary metabolic process | 0.000100942 | 5 | 1527 |
Module683 | 6 | 49 | GO:0060255 | biological_process | regulation of macromolecule metabolic process | 0.000102573 | 5 | 1532 |
Module683 | 6 | 50 | GO:0065007 | biological_process | biological regulation | 0.00010436 | 6 | 2926 |
Module683 | 6 | 51 | GO:0003677 | molecular_function | DNA binding | 0.000109919 | 5 | 1891 |
Module683 | 6 | 52 | GO:0031323 | biological_process | regulation of cellular metabolic process | 0.000109997 | 5 | 1554 |
Module683 | 6 | 53 | GO:0034654 | biological_process | nucleobase-containing compound biosynthetic process | 0.000126505 | 5 | 1599 |
Module683 | 6 | 54 | GO:0048827 | biological_process | phyllome development | 0.000158906 | 3 | 274 |
Module683 | 6 | 55 | GO:0009790 | biological_process | embryo development | 0.000171243 | 3 | 281 |
Module683 | 6 | 56 | GO:0048316 | biological_process | seed development | 0.000174879 | 3 | 283 |
Module683 | 6 | 57 | GO:0009908 | biological_process | flower development | 0.000197766 | 3 | 295 |
Module683 | 6 | 58 | GO:0019222 | biological_process | regulation of metabolic process | 0.000202794 | 5 | 1761 |
Module683 | 6 | 59 | GO:0010154 | biological_process | fruit development | 0.000211979 | 3 | 302 |
Module683 | 6 | 60 | GO:0090567 | biological_process | reproductive shoot system development | 0.000224682 | 3 | 308 |
Module683 | 6 | 61 | GO:0018130 | biological_process | heterocycle biosynthetic process | 0.000228141 | 5 | 1804 |
Module683 | 6 | 62 | GO:0019438 | biological_process | aromatic compound biosynthetic process | 0.000236275 | 5 | 1817 |
Module683 | 6 | 63 | GO:0016070 | biological_process | RNA metabolic process | 0.000260687 | 5 | 1854 |
Module683 | 6 | 64 | GO:1901362 | biological_process | organic cyclic compound biosynthetic process | 0.000312286 | 5 | 1924 |
Module683 | 6 | 65 | GO:0090304 | biological_process | nucleic acid metabolic process | 0.000579461 | 5 | 2185 |
Module683 | 6 | 66 | GO:0048367 | biological_process | shoot system development | 0.000880289 | 3 | 490 |
Module683 | 6 | 67 | GO:0099402 | biological_process | plant organ development | 0.001058848 | 3 | 522 |
Module683 | 6 | 68 | GO:0034645 | biological_process | cellular macromolecule biosynthetic process | 0.001126363 | 5 | 2507 |
Module683 | 6 | 69 | GO:0010467 | biological_process | gene expression | 0.001137232 | 5 | 2512 |
Module683 | 6 | 70 | GO:0044271 | biological_process | cellular nitrogen compound biosynthetic process | 0.001168105 | 5 | 2526 |
Module683 | 6 | 71 | GO:0009059 | biological_process | macromolecule biosynthetic process | 0.001172569 | 5 | 2528 |
Module683 | 6 | 72 | GO:0003676 | molecular_function | nucleic acid binding | 0.00124795 | 5 | 3117 |
Module683 | 6 | 73 | GO:0007275 | biological_process | multicellular organism development | 0.001263338 | 4 | 1347 |
Module683 | 6 | 74 | GO:0006139 | biological_process | nucleobase-containing compound metabolic process | 0.001334923 | 5 | 2597 |
Module683 | 6 | 75 | GO:0044707 | biological_process | single-multicellular organism process | 0.001436633 | 4 | 1393 |
Module683 | 6 | 76 | GO:0048856 | biological_process | anatomical structure development | 0.001488579 | 4 | 1406 |
Module683 | 6 | 77 | GO:0061458 | biological_process | reproductive system development | 0.001762541 | 3 | 622 |
Module683 | 6 | 78 | GO:0048608 | biological_process | reproductive structure development | 0.001762541 | 3 | 622 |
Module683 | 6 | 79 | GO:0032501 | biological_process | multicellular organismal process | 0.001862394 | 4 | 1491 |
Module683 | 6 | 80 | GO:0044767 | biological_process | single-organism developmental process | 0.002095988 | 4 | 1538 |
Module683 | 6 | 81 | GO:0046483 | biological_process | heterocycle metabolic process | 0.0021426 | 5 | 2866 |
Module683 | 6 | 82 | GO:0006725 | biological_process | cellular aromatic compound metabolic process | 0.002300886 | 5 | 2909 |
Module683 | 6 | 83 | GO:0032502 | biological_process | developmental process | 0.002338782 | 4 | 1583 |
Module683 | 6 | 84 | GO:1901360 | biological_process | organic cyclic compound metabolic process | 0.002661621 | 5 | 2999 |
Module683 | 6 | 85 | GO:0005634 | cellular_component | nucleus | 0.002773837 | 4 | 2423 |
Module683 | 6 | 86 | GO:0003006 | biological_process | developmental process involved in reproduction | 0.003024909 | 3 | 750 |
Module683 | 6 | 87 | GO:0044702 | biological_process | single organism reproductive process | 0.003311304 | 3 | 774 |
Module683 | 6 | 88 | GO:0009791 | biological_process | post-embryonic development | 0.003798908 | 3 | 812 |
Module683 | 6 | 89 | GO:0009956 | biological_process | radial pattern formation | 0.004444931 | 1 | 10 |
Module683 | 6 | 90 | GO:0022414 | biological_process | reproductive process | 0.005374525 | 3 | 917 |
Module683 | 6 | 91 | GO:0000003 | biological_process | reproduction | 0.005458248 | 3 | 922 |
Module683 | 6 | 92 | GO:0034641 | biological_process | cellular nitrogen compound metabolic process | 0.005890896 | 5 | 3545 |
Module683 | 6 | 93 | GO:0044249 | biological_process | cellular biosynthetic process | 0.005898746 | 5 | 3546 |
Module683 | 6 | 94 | GO:0048731 | biological_process | system development | 0.005924475 | 3 | 949 |
Module683 | 6 | 95 | GO:1901576 | biological_process | organic substance biosynthetic process | 0.006384782 | 5 | 3606 |
Module683 | 6 | 96 | GO:0009058 | biological_process | biosynthetic process | 0.007774097 | 5 | 3760 |
Module683 | 6 | 97 | GO:0006807 | biological_process | nitrogen compound metabolic process | 0.009085607 | 5 | 3887 |
Module683 | 6 | 98 | GO:0008276 | molecular_function | protein methyltransferase activity | 0.017431399 | 1 | 48 |
Module683 | 6 | 99 | GO:0010051 | biological_process | xylem and phloem pattern formation | 0.021185818 | 1 | 48 |
Module683 | 6 | 100 | GO:0044260 | biological_process | cellular macromolecule metabolic process | 0.028095226 | 5 | 4961 |
Module683 | 6 | 101 | GO:0008213 | biological_process | protein alkylation | 0.032071098 | 1 | 73 |
Module683 | 6 | 102 | GO:0006479 | biological_process | protein methylation | 0.032071098 | 1 | 73 |
Module683 | 6 | 103 | GO:1901363 | molecular_function | heterocyclic compound binding | 0.038045297 | 5 | 6456 |
Module683 | 6 | 104 | GO:0097159 | molecular_function | organic cyclic compound binding | 0.03817846 | 5 | 6461 |
Module683 | 6 | 105 | GO:0043170 | biological_process | macromolecule metabolic process | 0.044146345 | 5 | 5482 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
rld2 | hb124 | 0.0419 |
rld2 | rld1 | 0.0455 |
rld2 | hb25 | 0.0506 |
rld2 | GRMZM2G423337 | 0.0508 |
hb124 | GRMZM2G423337 | 0.0722 |
rld1 | hb25 | 0.0365 |
hb25 | hb119 | 0.0514 |
hb25 | GRMZM2G423337 | 0.0508 |