This page contains information for Module699, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
GRMZM2G058522 | sod9 | Module699 | AT1G08830 | CSD1 | copper/zinc superoxide dismutase 1 | copper/zinc superoxide dismutase 1 | |
GRMZM2G025992 | sod2 | Module699 | AT1G08830 | CSD1 | copper/zinc superoxide dismutase 1 | copper/zinc superoxide dismutase 1 | |
GRMZM2G169890 | sod4 | Module699 | AT1G08830 | CSD1 | copper/zinc superoxide dismutase 1 | copper/zinc superoxide dismutase 1 | |
GRMZM2G080828 | Module699 | AT5G46180 | DELTA-OAT | ornithine-delta-aminotransferase | ornithine-delta-aminotransferase | ||
GRMZM2G175728 | Module699 | AT1G12520 | CCS | copper chaperone for SOD1 | copper chaperone for SOD1 | ||
GRMZM2G106928 | Module699 | AT2G28190 | CSD2 | copper/zinc superoxide dismutase 2 | copper/zinc superoxide dismutase 2 |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module699 | 6 | 1 | GO:0004784 | molecular_function | superoxide dismutase activity | 2.65E-15 | 5 | 16 |
Module699 | 6 | 2 | GO:0016721 | molecular_function | oxidoreductase activity, acting on superoxide radicals as acceptor | 2.65E-15 | 5 | 16 |
Module699 | 6 | 3 | GO:0006801 | biological_process | superoxide metabolic process | 5.45E-14 | 5 | 23 |
Module699 | 6 | 4 | GO:0046688 | biological_process | response to copper ion | 5.40E-12 | 4 | 12 |
Module699 | 6 | 5 | GO:0072593 | biological_process | reactive oxygen species metabolic process | 1.14E-11 | 5 | 63 |
Module699 | 6 | 6 | GO:0010039 | biological_process | response to iron ion | 1.63E-10 | 4 | 26 |
Module699 | 6 | 7 | GO:0010193 | biological_process | response to ozone | 5.05E-10 | 4 | 34 |
Module699 | 6 | 8 | GO:0016209 | molecular_function | antioxidant activity | 1.86E-09 | 5 | 208 |
Module699 | 6 | 9 | GO:1990267 | biological_process | response to transition metal nanoparticle | 2.52E-08 | 4 | 88 |
Module699 | 6 | 10 | GO:0000302 | biological_process | response to reactive oxygen species | 1.08E-07 | 4 | 126 |
Module699 | 6 | 11 | GO:0009651 | biological_process | response to salt stress | 3.07E-07 | 5 | 474 |
Module699 | 6 | 12 | GO:0006970 | biological_process | response to osmotic stress | 4.74E-07 | 5 | 517 |
Module699 | 6 | 13 | GO:0071457 | biological_process | cellular response to ozone | 4.96E-07 | 2 | 3 |
Module699 | 6 | 14 | GO:0042742 | biological_process | defense response to bacterium | 1.55E-06 | 4 | 245 |
Module699 | 6 | 15 | GO:0071324 | biological_process | cellular response to disaccharide stimulus | 1.65E-06 | 2 | 5 |
Module699 | 6 | 16 | GO:0071329 | biological_process | cellular response to sucrose stimulus | 1.65E-06 | 2 | 5 |
Module699 | 6 | 17 | GO:0071493 | biological_process | cellular response to UV-B | 2.48E-06 | 2 | 6 |
Module699 | 6 | 18 | GO:0071484 | biological_process | cellular response to light intensity | 2.48E-06 | 2 | 6 |
Module699 | 6 | 19 | GO:0009617 | biological_process | response to bacterium | 3.44E-06 | 4 | 299 |
Module699 | 6 | 20 | GO:0000303 | biological_process | response to superoxide | 4.62E-06 | 2 | 8 |
Module699 | 6 | 21 | GO:0000305 | biological_process | response to oxygen radical | 4.62E-06 | 2 | 8 |
Module699 | 6 | 22 | GO:0034644 | biological_process | cellular response to UV | 5.94E-06 | 2 | 9 |
Module699 | 6 | 23 | GO:0006979 | biological_process | response to oxidative stress | 1.00E-05 | 4 | 391 |
Module699 | 6 | 24 | GO:0098542 | biological_process | defense response to other organism | 1.05E-05 | 4 | 396 |
Module699 | 6 | 25 | GO:0071472 | biological_process | cellular response to salt stress | 1.50E-05 | 2 | 14 |
Module699 | 6 | 26 | GO:0035195 | biological_process | gene silencing by miRNA | 2.24E-05 | 2 | 17 |
Module699 | 6 | 27 | GO:0010038 | biological_process | response to metal ion | 3.07E-05 | 4 | 519 |
Module699 | 6 | 28 | GO:0071470 | biological_process | cellular response to osmotic stress | 3.46E-05 | 2 | 21 |
Module699 | 6 | 29 | GO:0034614 | biological_process | cellular response to reactive oxygen species | 3.80E-05 | 2 | 22 |
Module699 | 6 | 30 | GO:0006952 | biological_process | defense response | 4.02E-05 | 4 | 556 |
Module699 | 6 | 31 | GO:0071322 | biological_process | cellular response to carbohydrate stimulus | 4.54E-05 | 2 | 24 |
Module699 | 6 | 32 | GO:0016491 | molecular_function | oxidoreductase activity | 4.65E-05 | 5 | 1587 |
Module699 | 6 | 33 | GO:0043207 | biological_process | response to external biotic stimulus | 5.33E-05 | 4 | 597 |
Module699 | 6 | 34 | GO:0051707 | biological_process | response to other organism | 5.33E-05 | 4 | 597 |
Module699 | 6 | 35 | GO:0046872 | molecular_function | metal ion binding | 5.33E-05 | 6 | 3184 |
Module699 | 6 | 36 | GO:0043169 | molecular_function | cation binding | 5.45E-05 | 6 | 3196 |
Module699 | 6 | 37 | GO:0009607 | biological_process | response to biotic stimulus | 6.18E-05 | 4 | 620 |
Module699 | 6 | 38 | GO:0034249 | biological_process | negative regulation of cellular amide metabolic process | 7.15E-05 | 2 | 30 |
Module699 | 6 | 39 | GO:0034599 | biological_process | cellular response to oxidative stress | 7.15E-05 | 2 | 30 |
Module699 | 6 | 40 | GO:0017148 | biological_process | negative regulation of translation | 7.15E-05 | 2 | 30 |
Module699 | 6 | 41 | GO:0009628 | biological_process | response to abiotic stimulus | 7.24E-05 | 5 | 1427 |
Module699 | 6 | 42 | GO:0055114 | biological_process | oxidation-reduction process | 9.10E-05 | 5 | 1495 |
Module699 | 6 | 43 | GO:0001101 | biological_process | response to acid chemical | 0.000102946 | 4 | 706 |
Module699 | 6 | 44 | GO:0035194 | biological_process | posttranscriptional gene silencing by RNA | 0.000121525 | 2 | 39 |
Module699 | 6 | 45 | GO:0016441 | biological_process | posttranscriptional gene silencing | 0.000154992 | 2 | 44 |
Module699 | 6 | 46 | GO:0009605 | biological_process | response to external stimulus | 0.000179705 | 4 | 814 |
Module699 | 6 | 47 | GO:0034285 | biological_process | response to disaccharide | 0.000184665 | 2 | 48 |
Module699 | 6 | 48 | GO:0031047 | biological_process | gene silencing by RNA | 0.000184665 | 2 | 48 |
Module699 | 6 | 49 | GO:0009744 | biological_process | response to sucrose | 0.000184665 | 2 | 48 |
Module699 | 6 | 50 | GO:0010035 | biological_process | response to inorganic substance | 0.000192987 | 4 | 829 |
Module699 | 6 | 51 | GO:0010224 | biological_process | response to UV-B | 0.000208606 | 2 | 51 |
Module699 | 6 | 52 | GO:0071482 | biological_process | cellular response to light stimulus | 0.000225369 | 2 | 53 |
Module699 | 6 | 53 | GO:0071478 | biological_process | cellular response to radiation | 0.000225369 | 2 | 53 |
Module699 | 6 | 54 | GO:0051704 | biological_process | multi-organism process | 0.000269343 | 4 | 903 |
Module699 | 6 | 55 | GO:1901700 | biological_process | response to oxygen-containing compound | 0.000277563 | 4 | 910 |
Module699 | 6 | 56 | GO:0051248 | biological_process | negative regulation of protein metabolic process | 0.000279497 | 2 | 59 |
Module699 | 6 | 57 | GO:0032269 | biological_process | negative regulation of cellular protein metabolic process | 0.000279497 | 2 | 59 |
Module699 | 6 | 58 | GO:0016458 | biological_process | gene silencing | 0.000371455 | 2 | 68 |
Module699 | 6 | 59 | GO:0006950 | biological_process | response to stress | 0.000440517 | 5 | 2065 |
Module699 | 6 | 60 | GO:0009411 | biological_process | response to UV | 0.000451869 | 2 | 75 |
Module699 | 6 | 61 | GO:0040029 | biological_process | regulation of gene expression, epigenetic | 0.000451869 | 2 | 75 |
Module699 | 6 | 62 | GO:0044710 | biological_process | single-organism metabolic process | 0.000502893 | 6 | 3802 |
Module699 | 6 | 63 | GO:0034248 | biological_process | regulation of cellular amide metabolic process | 0.00051405 | 2 | 80 |
Module699 | 6 | 64 | GO:0006417 | biological_process | regulation of translation | 0.00051405 | 2 | 80 |
Module699 | 6 | 65 | GO:0009743 | biological_process | response to carbohydrate | 0.00052696 | 2 | 81 |
Module699 | 6 | 66 | GO:0071214 | biological_process | cellular response to abiotic stimulus | 0.000650218 | 2 | 90 |
Module699 | 6 | 67 | GO:0009642 | biological_process | response to light intensity | 0.000770433 | 2 | 98 |
Module699 | 6 | 68 | GO:0010558 | biological_process | negative regulation of macromolecule biosynthetic process | 0.000883805 | 2 | 105 |
Module699 | 6 | 69 | GO:2000113 | biological_process | negative regulation of cellular macromolecule biosynthetic process | 0.000883805 | 2 | 105 |
Module699 | 6 | 70 | GO:0019544 | biological_process | arginine catabolic process to glutamate | 0.000890307 | 1 | 2 |
Module699 | 6 | 71 | GO:0031327 | biological_process | negative regulation of cellular biosynthetic process | 0.000987033 | 2 | 111 |
Module699 | 6 | 72 | GO:0010608 | biological_process | posttranscriptional regulation of gene expression | 0.00100478 | 2 | 112 |
Module699 | 6 | 73 | GO:0009890 | biological_process | negative regulation of biosynthetic process | 0.001040736 | 2 | 114 |
Module699 | 6 | 74 | GO:0051172 | biological_process | negative regulation of nitrogen compound metabolic process | 0.001058946 | 2 | 115 |
Module699 | 6 | 75 | GO:0016531 | molecular_function | copper chaperone activity | 0.001096959 | 1 | 3 |
Module699 | 6 | 76 | GO:0010629 | biological_process | negative regulation of gene expression | 0.001289467 | 2 | 127 |
Module699 | 6 | 77 | GO:0016530 | molecular_function | metallochaperone activity | 0.001827708 | 1 | 5 |
Module699 | 6 | 78 | GO:0043167 | molecular_function | ion binding | 0.002005628 | 6 | 5827 |
Module699 | 6 | 79 | GO:0031324 | biological_process | negative regulation of cellular metabolic process | 0.002087156 | 2 | 162 |
Module699 | 6 | 80 | GO:0010605 | biological_process | negative regulation of macromolecule metabolic process | 0.002216188 | 2 | 167 |
Module699 | 6 | 81 | GO:0032268 | biological_process | regulation of cellular protein metabolic process | 0.002295401 | 2 | 170 |
Module699 | 6 | 82 | GO:0051246 | biological_process | regulation of protein metabolic process | 0.002597307 | 2 | 181 |
Module699 | 6 | 83 | GO:0006591 | biological_process | ornithine metabolic process | 0.002668939 | 1 | 6 |
Module699 | 6 | 84 | GO:0006527 | biological_process | arginine catabolic process | 0.002668939 | 1 | 6 |
Module699 | 6 | 85 | GO:0071229 | biological_process | cellular response to acid chemical | 0.00268276 | 2 | 184 |
Module699 | 6 | 86 | GO:0042221 | biological_process | response to chemical | 0.002936735 | 4 | 1681 |
Module699 | 6 | 87 | GO:0048523 | biological_process | negative regulation of cellular process | 0.004742963 | 2 | 246 |
Module699 | 6 | 88 | GO:0006561 | biological_process | proline biosynthetic process | 0.004888517 | 1 | 11 |
Module699 | 6 | 89 | GO:1901701 | biological_process | cellular response to oxygen-containing compound | 0.004933205 | 2 | 251 |
Module699 | 6 | 90 | GO:0050896 | biological_process | response to stimulus | 0.005758661 | 5 | 3528 |
Module699 | 6 | 91 | GO:0009065 | biological_process | glutamine family amino acid catabolic process | 0.005775195 | 1 | 13 |
Module699 | 6 | 92 | GO:0006525 | biological_process | arginine metabolic process | 0.006218288 | 1 | 14 |
Module699 | 6 | 93 | GO:0009892 | biological_process | negative regulation of metabolic process | 0.006537793 | 2 | 290 |
Module699 | 6 | 94 | GO:0006560 | biological_process | proline metabolic process | 0.006661215 | 1 | 15 |
Module699 | 6 | 95 | GO:0006536 | biological_process | glutamate metabolic process | 0.007989011 | 1 | 18 |
Module699 | 6 | 96 | GO:0008047 | molecular_function | enzyme activator activity | 0.009110726 | 1 | 25 |
Module699 | 6 | 97 | GO:0071248 | biological_process | cellular response to metal ion | 0.009315327 | 1 | 21 |
Module699 | 6 | 98 | GO:0071241 | biological_process | cellular response to inorganic substance | 0.01108145 | 1 | 25 |
Module699 | 6 | 99 | GO:0009816 | biological_process | defense response to bacterium, incompatible interaction | 0.01108145 | 1 | 25 |
Module699 | 6 | 100 | GO:0071310 | biological_process | cellular response to organic substance | 0.011202658 | 2 | 383 |
Module699 | 6 | 101 | GO:0009084 | biological_process | glutamine family amino acid biosynthetic process | 0.012404319 | 1 | 28 |
Module699 | 6 | 102 | GO:0033554 | biological_process | cellular response to stress | 0.012711021 | 2 | 409 |
Module699 | 6 | 103 | GO:1901566 | biological_process | organonitrogen compound biosynthetic process | 0.014789576 | 3 | 1315 |
Module699 | 6 | 104 | GO:0048519 | biological_process | negative regulation of biological process | 0.0151998 | 2 | 449 |
Module699 | 6 | 105 | GO:0070887 | biological_process | cellular response to chemical stimulus | 0.015264594 | 2 | 450 |
Module699 | 6 | 106 | GO:0009416 | biological_process | response to light stimulus | 0.016118192 | 2 | 463 |
Module699 | 6 | 107 | GO:0009314 | biological_process | response to radiation | 0.017060745 | 2 | 477 |
Module699 | 6 | 108 | GO:0016769 | molecular_function | transferase activity, transferring nitrogenous groups | 0.017431399 | 1 | 48 |
Module699 | 6 | 109 | GO:0008483 | molecular_function | transaminase activity | 0.017431399 | 1 | 48 |
Module699 | 6 | 110 | GO:0044699 | biological_process | single-organism process | 0.019877174 | 6 | 7015 |
Module699 | 6 | 111 | GO:0044237 | biological_process | cellular metabolic process | 0.020532266 | 6 | 7053 |
Module699 | 6 | 112 | GO:0003824 | molecular_function | catalytic activity | 0.02113986 | 6 | 8627 |
Module699 | 6 | 113 | GO:1901606 | biological_process | alpha-amino acid catabolic process | 0.021623179 | 1 | 49 |
Module699 | 6 | 114 | GO:0009064 | biological_process | glutamine family amino acid metabolic process | 0.022497413 | 1 | 51 |
Module699 | 6 | 115 | GO:0009063 | biological_process | cellular amino acid catabolic process | 0.022934286 | 1 | 52 |
Module699 | 6 | 116 | GO:0042538 | biological_process | hyperosmotic salinity response | 0.023807543 | 1 | 54 |
Module699 | 6 | 117 | GO:0006972 | biological_process | hyperosmotic response | 0.029467876 | 1 | 67 |
Module699 | 6 | 118 | GO:0005737 | cellular_component | cytoplasm | 0.030504884 | 6 | 5900 |
Module699 | 6 | 119 | GO:0043648 | biological_process | dicarboxylic acid metabolic process | 0.030770215 | 1 | 70 |
Module699 | 6 | 120 | GO:1901564 | biological_process | organonitrogen compound metabolic process | 0.033701862 | 3 | 1779 |
Module699 | 6 | 121 | GO:0016054 | biological_process | organic acid catabolic process | 0.036828558 | 1 | 84 |
Module699 | 6 | 122 | GO:0046395 | biological_process | carboxylic acid catabolic process | 0.036828558 | 1 | 84 |
Module699 | 6 | 123 | GO:0030170 | molecular_function | pyridoxal phosphate binding | 0.042397787 | 1 | 118 |
Module699 | 6 | 124 | GO:0009570 | cellular_component | chloroplast stroma | 0.042446517 | 2 | 607 |
Module699 | 6 | 125 | GO:0006412 | biological_process | translation | 0.043051303 | 2 | 781 |
Module699 | 6 | 126 | GO:0043043 | biological_process | peptide biosynthetic process | 0.043867191 | 2 | 789 |
Module699 | 6 | 127 | GO:0009532 | cellular_component | plastid stroma | 0.04439938 | 2 | 622 |
Module699 | 6 | 128 | GO:0006518 | biological_process | peptide metabolic process | 0.046247514 | 2 | 812 |
Module699 | 6 | 129 | GO:0044282 | biological_process | small molecule catabolic process | 0.047140867 | 1 | 108 |
Module699 | 6 | 130 | GO:0043604 | biological_process | amide biosynthetic process | 0.047298306 | 2 | 822 |
Module699 | 6 | 131 | GO:1901565 | biological_process | organonitrogen compound catabolic process | 0.049277641 | 1 | 113 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
sod9 | sod2 | 0.1899 |
sod9 | sod4 | 0.178 |
sod2 | sod4 | 0.1395 |
sod2 | GRMZM2G175728 | 0.0958 |
sod4 | GRMZM2G080828 | 0.0351 |
GRMZM2G175728 | GRMZM2G106928 | 0.0661 |