This page contains information for Module713, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
GRMZM2G074742 | iaa9 | Module713 | AT3G17600 | IAA31 | indole-3-acetic acid inducible 31 | indole-3-acetic acid inducible 31 | AUX/IAA |
GRMZM2G004696 | iaa8 | Module713 | AT1G04250 | AXR3 | AUXIN RESISTANT 3 | AUX/IAA transcriptional regulator family protein | AUX/IAA |
GRMZM2G130953 | bif1 | Module713 | AT1G04250 | AXR3 | AUXIN RESISTANT 3 | AUX/IAA transcriptional regulator family protein | AUX/IAA |
GRMZM2G016802 | Module713 | AT3G46530 | RPP13 | RECOGNITION OF PERONOSPORA PARASITICA 13 | NB-ARC domain-containing disease resistance protein | ||
GRMZM2G147243 | iaa28 | Module713 | AT4G29080 | PAP2 | phytochrome-associated protein 2 | phytochrome-associated protein 2 | AUX/IAA |
GRMZM2G163826 | Module713 | AT3G56960 | PIP5K4 | phosphatidyl inositol monophosphate 5 kinase 4 | phosphatidyl inositol monophosphate 5 kinase 4 |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module713 | 6 | 1 | GO:0009734 | biological_process | auxin-activated signaling pathway | 1.25E-05 | 3 | 117 |
Module713 | 6 | 2 | GO:0071365 | biological_process | cellular response to auxin stimulus | 1.42E-05 | 3 | 122 |
Module713 | 6 | 3 | GO:0046983 | molecular_function | protein dimerization activity | 1.63E-05 | 4 | 538 |
Module713 | 6 | 4 | GO:0009733 | biological_process | response to auxin | 9.33E-05 | 3 | 229 |
Module713 | 6 | 5 | GO:0009755 | biological_process | hormone-mediated signaling pathway | 0.000188005 | 3 | 290 |
Module713 | 6 | 6 | GO:0032870 | biological_process | cellular response to hormone stimulus | 0.000242379 | 3 | 316 |
Module713 | 6 | 7 | GO:0071495 | biological_process | cellular response to endogenous stimulus | 0.00025389 | 3 | 321 |
Module713 | 6 | 8 | GO:0071310 | biological_process | cellular response to organic substance | 0.000427379 | 3 | 383 |
Module713 | 6 | 9 | GO:0034248 | biological_process | regulation of cellular amide metabolic process | 0.00051405 | 2 | 80 |
Module713 | 6 | 10 | GO:0006417 | biological_process | regulation of translation | 0.00051405 | 2 | 80 |
Module713 | 6 | 11 | GO:0070887 | biological_process | cellular response to chemical stimulus | 0.000686128 | 3 | 450 |
Module713 | 6 | 12 | GO:0010608 | biological_process | posttranscriptional regulation of gene expression | 0.00100478 | 2 | 112 |
Module713 | 6 | 13 | GO:2001141 | biological_process | regulation of RNA biosynthetic process | 0.001079872 | 4 | 1293 |
Module713 | 6 | 14 | GO:0006355 | biological_process | regulation of transcription, DNA-templated | 0.001079872 | 4 | 1293 |
Module713 | 6 | 15 | GO:1903506 | biological_process | regulation of nucleic acid-templated transcription | 0.001079872 | 4 | 1293 |
Module713 | 6 | 16 | GO:0051252 | biological_process | regulation of RNA metabolic process | 0.001115561 | 4 | 1304 |
Module713 | 6 | 17 | GO:0019219 | biological_process | regulation of nucleobase-containing compound metabolic process | 0.001213754 | 4 | 1333 |
Module713 | 6 | 18 | GO:0010556 | biological_process | regulation of macromolecule biosynthetic process | 0.001363093 | 4 | 1374 |
Module713 | 6 | 19 | GO:2000112 | biological_process | regulation of cellular macromolecule biosynthetic process | 0.001363093 | 4 | 1374 |
Module713 | 6 | 20 | GO:0031326 | biological_process | regulation of cellular biosynthetic process | 0.00149263 | 4 | 1407 |
Module713 | 6 | 21 | GO:0051171 | biological_process | regulation of nitrogen compound metabolic process | 0.001500757 | 4 | 1409 |
Module713 | 6 | 22 | GO:0010468 | biological_process | regulation of gene expression | 0.001521214 | 4 | 1414 |
Module713 | 6 | 23 | GO:0097659 | biological_process | nucleic acid-templated transcription | 0.001521214 | 4 | 1414 |
Module713 | 6 | 24 | GO:0006351 | biological_process | transcription, DNA-templated | 0.001521214 | 4 | 1414 |
Module713 | 6 | 25 | GO:0032774 | biological_process | RNA biosynthetic process | 0.001541872 | 4 | 1419 |
Module713 | 6 | 26 | GO:0009889 | biological_process | regulation of biosynthetic process | 0.001554364 | 4 | 1422 |
Module713 | 6 | 27 | GO:0080090 | biological_process | regulation of primary metabolic process | 0.002039523 | 4 | 1527 |
Module713 | 6 | 28 | GO:0060255 | biological_process | regulation of macromolecule metabolic process | 0.002065051 | 4 | 1532 |
Module713 | 6 | 29 | GO:0031323 | biological_process | regulation of cellular metabolic process | 0.002180121 | 4 | 1554 |
Module713 | 6 | 30 | GO:0016308 | molecular_function | 1-phosphatidylinositol-4-phosphate 5-kinase activity | 0.002192915 | 1 | 6 |
Module713 | 6 | 31 | GO:0032268 | biological_process | regulation of cellular protein metabolic process | 0.002295401 | 2 | 170 |
Module713 | 6 | 32 | GO:0034654 | biological_process | nucleobase-containing compound biosynthetic process | 0.002429795 | 4 | 1599 |
Module713 | 6 | 33 | GO:0007165 | biological_process | signal transduction | 0.002449492 | 3 | 697 |
Module713 | 6 | 34 | GO:0023052 | biological_process | signaling | 0.002541794 | 3 | 706 |
Module713 | 6 | 35 | GO:0044700 | biological_process | single organism signaling | 0.002541794 | 3 | 706 |
Module713 | 6 | 36 | GO:0051246 | biological_process | regulation of protein metabolic process | 0.002597307 | 2 | 181 |
Module713 | 6 | 37 | GO:0005634 | cellular_component | nucleus | 0.002773837 | 4 | 2423 |
Module713 | 6 | 38 | GO:0019222 | biological_process | regulation of metabolic process | 0.003500508 | 4 | 1761 |
Module713 | 6 | 39 | GO:0009725 | biological_process | response to hormone | 0.003511448 | 3 | 790 |
Module713 | 6 | 40 | GO:0018130 | biological_process | heterocycle biosynthetic process | 0.003833618 | 4 | 1804 |
Module713 | 6 | 41 | GO:0019438 | biological_process | aromatic compound biosynthetic process | 0.003938636 | 4 | 1817 |
Module713 | 6 | 42 | GO:0009719 | biological_process | response to endogenous stimulus | 0.004030919 | 3 | 829 |
Module713 | 6 | 43 | GO:0016070 | biological_process | RNA metabolic process | 0.004248783 | 4 | 1854 |
Module713 | 6 | 44 | GO:0007154 | biological_process | cell communication | 0.004521321 | 3 | 863 |
Module713 | 6 | 45 | GO:1901362 | biological_process | organic cyclic compound biosynthetic process | 0.004882648 | 4 | 1924 |
Module713 | 6 | 46 | GO:0010033 | biological_process | response to organic substance | 0.006139412 | 3 | 961 |
Module713 | 6 | 47 | GO:0090304 | biological_process | nucleic acid metabolic process | 0.007844662 | 4 | 2185 |
Module713 | 6 | 48 | GO:0016307 | molecular_function | phosphatidylinositol phosphate kinase activity | 0.009110726 | 1 | 25 |
Module713 | 6 | 49 | GO:0051716 | biological_process | cellular response to stimulus | 0.010157409 | 3 | 1149 |
Module713 | 6 | 50 | GO:0050794 | biological_process | regulation of cellular process | 0.010772094 | 4 | 2381 |
Module713 | 6 | 51 | GO:0034645 | biological_process | cellular macromolecule biosynthetic process | 0.013013592 | 4 | 2507 |
Module713 | 6 | 52 | GO:0010467 | biological_process | gene expression | 0.013108714 | 4 | 2512 |
Module713 | 6 | 53 | GO:0044271 | biological_process | cellular nitrogen compound biosynthetic process | 0.013377626 | 4 | 2526 |
Module713 | 6 | 54 | GO:0009059 | biological_process | macromolecule biosynthetic process | 0.013416353 | 4 | 2528 |
Module713 | 6 | 55 | GO:0006139 | biological_process | nucleobase-containing compound metabolic process | 0.014800678 | 4 | 2597 |
Module713 | 6 | 56 | GO:0046854 | biological_process | phosphatidylinositol phosphorylation | 0.016364083 | 1 | 37 |
Module713 | 6 | 57 | GO:0046834 | biological_process | lipid phosphorylation | 0.016364083 | 1 | 37 |
Module713 | 6 | 58 | GO:0050789 | biological_process | regulation of biological process | 0.018241482 | 4 | 2751 |
Module713 | 6 | 59 | GO:0046483 | biological_process | heterocycle metabolic process | 0.021144355 | 4 | 2866 |
Module713 | 6 | 60 | GO:0006725 | biological_process | cellular aromatic compound metabolic process | 0.022306404 | 4 | 2909 |
Module713 | 6 | 61 | GO:0065007 | biological_process | biological regulation | 0.022777603 | 4 | 2926 |
Module713 | 6 | 62 | GO:1901360 | biological_process | organic cyclic compound metabolic process | 0.024878232 | 4 | 2999 |
Module713 | 6 | 63 | GO:0043531 | molecular_function | ADP binding | 0.025693765 | 1 | 71 |
Module713 | 6 | 64 | GO:0042221 | biological_process | response to chemical | 0.028941834 | 3 | 1681 |
Module713 | 6 | 65 | GO:0005515 | molecular_function | protein binding | 0.034144264 | 4 | 3991 |
Module713 | 6 | 66 | GO:0046488 | biological_process | phosphatidylinositol metabolic process | 0.03898459 | 1 | 89 |
Module713 | 6 | 67 | GO:0030258 | biological_process | lipid modification | 0.040706518 | 1 | 93 |
Module713 | 6 | 68 | GO:0006412 | biological_process | translation | 0.043051303 | 2 | 781 |
Module713 | 6 | 69 | GO:0043043 | biological_process | peptide biosynthetic process | 0.043867191 | 2 | 789 |
Module713 | 6 | 70 | GO:0050896 | biological_process | response to stimulus | 0.044130452 | 4 | 3528 |
Module713 | 6 | 71 | GO:0034641 | biological_process | cellular nitrogen compound metabolic process | 0.044874376 | 4 | 3545 |
Module713 | 6 | 72 | GO:0044249 | biological_process | cellular biosynthetic process | 0.044918392 | 4 | 3546 |
Module713 | 6 | 73 | GO:0006518 | biological_process | peptide metabolic process | 0.046247514 | 2 | 812 |
Module713 | 6 | 74 | GO:0043604 | biological_process | amide biosynthetic process | 0.047298306 | 2 | 822 |
Module713 | 6 | 75 | GO:1901576 | biological_process | organic substance biosynthetic process | 0.047611528 | 4 | 3606 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
iaa9 | iaa8 | 0.0394 |
iaa8 | bif1 | 0.1021 |
iaa8 | iaa28 | 0.035 |
bif1 | GRMZM2G016802 | 0.0451 |
bif1 | GRMZM2G163826 | 0.0392 |