This page contains information for Module721, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
GRMZM2G080603 | grp1 | Module721 | AT2G21660 | GRP7 | GLYCINE-RICH RNA-BINDING PROTEIN 7 | cold, circadian rhythm, and rna binding 2 | |
GRMZM2G048277 | Module721 | AT1G26550 | AT1G26550 | FKBP-like peptidyl-prolyl cis-trans isomerase family protein | |||
GRMZM2G101446 | Module721 | AT5G42190 | AT5G42190 | E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein | |||
GRMZM2G146331 | Module721 | AT5G41010 | NRPB12 | DNA directed RNA polymerase, 7 kDa subunit | |||
GRMZM2G165901 | rab15 | Module721 | AT2G21660 | GRP7 | GLYCINE-RICH RNA-BINDING PROTEIN 7 | cold, circadian rhythm, and rna binding 2 | |
GRMZM2G389768 | csd2 | Module721 | AT2G17870 | CSP3 | cold shock domain protein 3 | cold shock domain protein 3 | CSD |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module721 | 6 | 1 | GO:0000380 | biological_process | alternative mRNA splicing, via spliceosome | 9.91E-07 | 2 | 4 |
Module721 | 6 | 2 | GO:0000398 | biological_process | mRNA splicing, via spliceosome | 9.77E-05 | 2 | 35 |
Module721 | 6 | 3 | GO:0000375 | biological_process | RNA splicing, via transesterification reactions | 0.000147976 | 2 | 43 |
Module721 | 6 | 4 | GO:0000377 | biological_process | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | 0.000147976 | 2 | 43 |
Module721 | 6 | 5 | GO:0031981 | cellular_component | nuclear lumen | 0.000183843 | 3 | 601 |
Module721 | 6 | 6 | GO:0070013 | cellular_component | intracellular organelle lumen | 0.000250299 | 3 | 666 |
Module721 | 6 | 7 | GO:0043233 | cellular_component | organelle lumen | 0.000250299 | 3 | 666 |
Module721 | 6 | 8 | GO:0031974 | cellular_component | membrane-enclosed lumen | 0.000259442 | 3 | 674 |
Module721 | 6 | 9 | GO:0010043 | biological_process | response to zinc ion | 0.000270076 | 2 | 58 |
Module721 | 6 | 10 | GO:0044428 | cellular_component | nuclear part | 0.00034072 | 3 | 738 |
Module721 | 6 | 11 | GO:0008380 | biological_process | RNA splicing | 0.000382467 | 2 | 69 |
Module721 | 6 | 12 | GO:1990267 | biological_process | response to transition metal nanoparticle | 0.000621729 | 2 | 88 |
Module721 | 6 | 13 | GO:0006397 | biological_process | mRNA processing | 0.000621729 | 2 | 88 |
Module721 | 6 | 14 | GO:0005777 | cellular_component | peroxisome | 0.00071281 | 2 | 164 |
Module721 | 6 | 15 | GO:0042579 | cellular_component | microbody | 0.00071281 | 2 | 164 |
Module721 | 6 | 16 | GO:0010501 | biological_process | RNA secondary structure unwinding | 0.000890307 | 1 | 2 |
Module721 | 6 | 17 | GO:0016071 | biological_process | mRNA metabolic process | 0.000987033 | 2 | 111 |
Module721 | 6 | 18 | GO:0045087 | biological_process | innate immune response | 0.002403104 | 2 | 174 |
Module721 | 6 | 19 | GO:0044260 | biological_process | cellular macromolecule metabolic process | 0.002484387 | 6 | 4961 |
Module721 | 6 | 20 | GO:0006955 | biological_process | immune response | 0.002569119 | 2 | 180 |
Module721 | 6 | 21 | GO:0002376 | biological_process | immune system process | 0.003160914 | 2 | 200 |
Module721 | 6 | 22 | GO:0048046 | cellular_component | apoplast | 0.003328622 | 2 | 356 |
Module721 | 6 | 23 | GO:0071427 | biological_process | mRNA-containing ribonucleoprotein complex export from nucleus | 0.003557265 | 1 | 8 |
Module721 | 6 | 24 | GO:0006406 | biological_process | mRNA export from nucleus | 0.003557265 | 1 | 8 |
Module721 | 6 | 25 | GO:0051028 | biological_process | mRNA transport | 0.003557265 | 1 | 8 |
Module721 | 6 | 26 | GO:0005665 | cellular_component | DNA-directed RNA polymerase II, core complex | 0.00397501 | 1 | 14 |
Module721 | 6 | 27 | GO:0071426 | biological_process | ribonucleoprotein complex export from nucleus | 0.00400118 | 1 | 9 |
Module721 | 6 | 28 | GO:0071166 | biological_process | ribonucleoprotein complex localization | 0.00400118 | 1 | 9 |
Module721 | 6 | 29 | GO:0016070 | biological_process | RNA metabolic process | 0.004248783 | 4 | 1854 |
Module721 | 6 | 30 | GO:0000418 | cellular_component | DNA-directed RNA polymerase IV complex | 0.004258535 | 1 | 15 |
Module721 | 6 | 31 | GO:0051236 | biological_process | establishment of RNA localization | 0.004444931 | 1 | 10 |
Module721 | 6 | 32 | GO:0006403 | biological_process | RNA localization | 0.004444931 | 1 | 10 |
Module721 | 6 | 33 | GO:0006405 | biological_process | RNA export from nucleus | 0.004444931 | 1 | 10 |
Module721 | 6 | 34 | GO:0050657 | biological_process | nucleic acid transport | 0.004444931 | 1 | 10 |
Module721 | 6 | 35 | GO:0050658 | biological_process | RNA transport | 0.004444931 | 1 | 10 |
Module721 | 6 | 36 | GO:0043170 | biological_process | macromolecule metabolic process | 0.00452442 | 6 | 5482 |
Module721 | 6 | 37 | GO:0003729 | molecular_function | mRNA binding | 0.004867947 | 1 | 16 |
Module721 | 6 | 38 | GO:0044822 | molecular_function | poly(A) RNA binding | 0.004867947 | 1 | 16 |
Module721 | 6 | 39 | GO:0005730 | cellular_component | nucleolus | 0.00510536 | 2 | 442 |
Module721 | 6 | 40 | GO:0003676 | molecular_function | nucleic acid binding | 0.00551965 | 4 | 3117 |
Module721 | 6 | 41 | GO:0003697 | molecular_function | single-stranded DNA binding | 0.006385287 | 1 | 21 |
Module721 | 6 | 42 | GO:0009506 | cellular_component | plasmodesma | 0.007032812 | 2 | 520 |
Module721 | 6 | 43 | GO:0055044 | cellular_component | symplast | 0.007032812 | 2 | 520 |
Module721 | 6 | 44 | GO:0005911 | cellular_component | cell-cell junction | 0.007032812 | 2 | 520 |
Module721 | 6 | 45 | GO:0030054 | cellular_component | cell junction | 0.007032812 | 2 | 520 |
Module721 | 6 | 46 | GO:0005576 | cellular_component | extracellular region | 0.007112878 | 2 | 523 |
Module721 | 6 | 47 | GO:0009409 | biological_process | response to cold | 0.007303323 | 2 | 307 |
Module721 | 6 | 48 | GO:0006396 | biological_process | RNA processing | 0.007489205 | 2 | 311 |
Module721 | 6 | 49 | GO:0051168 | biological_process | nuclear export | 0.007546577 | 1 | 17 |
Module721 | 6 | 50 | GO:0090304 | biological_process | nucleic acid metabolic process | 0.007844662 | 4 | 2185 |
Module721 | 6 | 51 | GO:0032392 | biological_process | DNA geometric change | 0.008873386 | 1 | 20 |
Module721 | 6 | 52 | GO:0032508 | biological_process | DNA duplex unwinding | 0.008873386 | 1 | 20 |
Module721 | 6 | 53 | GO:0016591 | cellular_component | DNA-directed RNA polymerase II, holoenzyme | 0.009635301 | 1 | 34 |
Module721 | 6 | 54 | GO:0009737 | biological_process | response to abscisic acid | 0.009888327 | 2 | 359 |
Module721 | 6 | 55 | GO:0005618 | cellular_component | cell wall | 0.009998547 | 2 | 622 |
Module721 | 6 | 56 | GO:0030312 | cellular_component | external encapsulating structure | 0.010030089 | 2 | 623 |
Module721 | 6 | 57 | GO:0055029 | cellular_component | nuclear DNA-directed RNA polymerase complex | 0.011893399 | 1 | 42 |
Module721 | 6 | 58 | GO:0000428 | cellular_component | DNA-directed RNA polymerase complex | 0.011893399 | 1 | 42 |
Module721 | 6 | 59 | GO:0030880 | cellular_component | RNA polymerase complex | 0.011893399 | 1 | 42 |
Module721 | 6 | 60 | GO:0005634 | cellular_component | nucleus | 0.012092553 | 3 | 2423 |
Module721 | 6 | 61 | GO:0097305 | biological_process | response to alcohol | 0.012651399 | 2 | 408 |
Module721 | 6 | 62 | GO:0003677 | molecular_function | DNA binding | 0.012777468 | 3 | 1891 |
Module721 | 6 | 63 | GO:0003723 | molecular_function | RNA binding | 0.01285125 | 2 | 611 |
Module721 | 6 | 64 | GO:0010467 | biological_process | gene expression | 0.013108714 | 4 | 2512 |
Module721 | 6 | 65 | GO:0006139 | biological_process | nucleobase-containing compound metabolic process | 0.014800678 | 4 | 2597 |
Module721 | 6 | 66 | GO:0033993 | biological_process | response to lipid | 0.015006168 | 2 | 446 |
Module721 | 6 | 67 | GO:0009266 | biological_process | response to temperature stimulus | 0.015070587 | 2 | 447 |
Module721 | 6 | 68 | GO:0009651 | biological_process | response to salt stress | 0.016856746 | 2 | 474 |
Module721 | 6 | 69 | GO:0003755 | molecular_function | peptidyl-prolyl cis-trans isomerase activity | 0.016954917 | 1 | 56 |
Module721 | 6 | 70 | GO:0051169 | biological_process | nuclear transport | 0.017242231 | 1 | 39 |
Module721 | 6 | 71 | GO:0006913 | biological_process | nucleocytoplasmic transport | 0.017242231 | 1 | 39 |
Module721 | 6 | 72 | GO:0016859 | molecular_function | cis-trans isomerase activity | 0.017856683 | 1 | 59 |
Module721 | 6 | 73 | GO:0003690 | molecular_function | double-stranded DNA binding | 0.018157125 | 1 | 60 |
Module721 | 6 | 74 | GO:0000413 | biological_process | protein peptidyl-prolyl isomerization | 0.018996568 | 1 | 43 |
Module721 | 6 | 75 | GO:0006970 | biological_process | response to osmotic stress | 0.019884853 | 2 | 517 |
Module721 | 6 | 76 | GO:0010038 | biological_process | response to metal ion | 0.020031091 | 2 | 519 |
Module721 | 6 | 77 | GO:0018208 | biological_process | peptidyl-proline modification | 0.020310607 | 1 | 46 |
Module721 | 6 | 78 | GO:0061695 | cellular_component | transferase complex, transferring phosphorus-containing groups | 0.020330697 | 1 | 72 |
Module721 | 6 | 79 | GO:0044237 | biological_process | cellular metabolic process | 0.020532266 | 6 | 7053 |
Module721 | 6 | 80 | GO:0046483 | biological_process | heterocycle metabolic process | 0.021144355 | 4 | 2866 |
Module721 | 6 | 81 | GO:0015931 | biological_process | nucleobase-containing compound transport | 0.021623179 | 1 | 49 |
Module721 | 6 | 82 | GO:0003899 | molecular_function | DNA-directed RNA polymerase activity | 0.022056178 | 1 | 73 |
Module721 | 6 | 83 | GO:0006725 | biological_process | cellular aromatic compound metabolic process | 0.022306404 | 4 | 2909 |
Module721 | 6 | 84 | GO:0006952 | biological_process | defense response | 0.022821419 | 2 | 556 |
Module721 | 6 | 85 | GO:0034062 | molecular_function | RNA polymerase activity | 0.023552512 | 1 | 78 |
Module721 | 6 | 86 | GO:0044446 | cellular_component | intracellular organelle part | 0.024243912 | 3 | 3055 |
Module721 | 6 | 87 | GO:0044422 | cellular_component | organelle part | 0.024363184 | 3 | 3060 |
Module721 | 6 | 88 | GO:1901360 | biological_process | organic cyclic compound metabolic process | 0.024878232 | 4 | 2999 |
Module721 | 6 | 89 | GO:0010119 | biological_process | regulation of stomatal movement | 0.025552106 | 1 | 58 |
Module721 | 6 | 90 | GO:0044238 | biological_process | primary metabolic process | 0.026623751 | 6 | 7365 |
Module721 | 6 | 91 | GO:0007623 | biological_process | circadian rhythm | 0.027294071 | 1 | 62 |
Module721 | 6 | 92 | GO:0048511 | biological_process | rhythmic process | 0.027294071 | 1 | 62 |
Module721 | 6 | 93 | GO:0061458 | biological_process | reproductive system development | 0.028189133 | 2 | 622 |
Module721 | 6 | 94 | GO:0048608 | biological_process | reproductive structure development | 0.028189133 | 2 | 622 |
Module721 | 6 | 95 | GO:0001101 | biological_process | response to acid chemical | 0.03571306 | 2 | 706 |
Module721 | 6 | 96 | GO:0071704 | biological_process | organic substance metabolic process | 0.03748409 | 6 | 7797 |
Module721 | 6 | 97 | GO:0003006 | biological_process | developmental process involved in reproduction | 0.039949416 | 2 | 750 |
Module721 | 6 | 98 | GO:0044451 | cellular_component | nucleoplasm part | 0.04038395 | 1 | 144 |
Module721 | 6 | 99 | GO:0010118 | biological_process | stomatal movement | 0.041566517 | 1 | 95 |
Module721 | 6 | 100 | GO:0010228 | biological_process | vegetative to reproductive phase transition of meristem | 0.043284588 | 1 | 99 |
Module721 | 6 | 101 | GO:0005654 | cellular_component | nucleoplasm | 0.04369932 | 1 | 156 |
Module721 | 6 | 102 | GO:0043228 | cellular_component | non-membrane-bounded organelle | 0.043812015 | 2 | 1333 |
Module721 | 6 | 103 | GO:0043232 | cellular_component | intracellular non-membrane-bounded organelle | 0.043812015 | 2 | 1333 |
Module721 | 6 | 104 | GO:0009725 | biological_process | response to hormone | 0.043969616 | 2 | 790 |
Module721 | 6 | 105 | GO:0034641 | biological_process | cellular nitrogen compound metabolic process | 0.044874376 | 4 | 3545 |
Module721 | 6 | 106 | GO:0009791 | biological_process | post-embryonic development | 0.046247514 | 2 | 812 |
Module721 | 6 | 107 | GO:0009719 | biological_process | response to endogenous stimulus | 0.048039525 | 2 | 829 |
Module721 | 6 | 108 | GO:0010035 | biological_process | response to inorganic substance | 0.048039525 | 2 | 829 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
grp1 | GRMZM2G048277 | 0.0352 |
grp1 | GRMZM2G101446 | 0.035 |
grp1 | rab15 | 0.0596 |
grp1 | csd2 | 0.0448 |
GRMZM2G048277 | GRMZM2G146331 | 0.0442 |