This page contains information for Module722, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
GRMZM2G081158 | arftf34 | Module722 | AT1G30330 | ARF6 | auxin response factor 6 | auxin response factor 6 | ARF |
GRMZM2G073750 | pza02619 | Module722 | AT1G30330 | ARF6 | auxin response factor 6 | auxin response factor 6 | ARF |
GRMZM2G096048 | Module722 | AT3G48550 | AT3G48550 | ||||
GRMZM2G475882 | arftf30 | Module722 | AT5G37020 | ARF8 | auxin response factor 8 | auxin response factor 8 | ARF |
GRMZM2G077755 | tcptf26 | Module722 | AT3G47620 | TCP14 | TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 | TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 | TCP |
GRMZM2G078274 | arftf3 | Module722 | AT5G37020 | ARF8 | auxin response factor 8 | auxin response factor 8 | ARF |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module722 | 6 | 1 | GO:0009725 | biological_process | response to hormone | 6.84E-07 | 5 | 790 |
Module722 | 6 | 2 | GO:0009719 | biological_process | response to endogenous stimulus | 8.71E-07 | 5 | 829 |
Module722 | 6 | 3 | GO:0046983 | molecular_function | protein dimerization activity | 1.14E-06 | 4 | 538 |
Module722 | 6 | 4 | GO:0090567 | biological_process | reproductive shoot system development | 1.31E-06 | 4 | 308 |
Module722 | 6 | 5 | GO:0010033 | biological_process | response to organic substance | 1.83E-06 | 5 | 961 |
Module722 | 6 | 6 | GO:0009734 | biological_process | auxin-activated signaling pathway | 6.30E-06 | 3 | 117 |
Module722 | 6 | 7 | GO:0071365 | biological_process | cellular response to auxin stimulus | 7.14E-06 | 3 | 122 |
Module722 | 6 | 8 | GO:0048367 | biological_process | shoot system development | 8.39E-06 | 4 | 490 |
Module722 | 6 | 9 | GO:0061458 | biological_process | reproductive system development | 2.17E-05 | 4 | 622 |
Module722 | 6 | 10 | GO:0048608 | biological_process | reproductive structure development | 2.17E-05 | 4 | 622 |
Module722 | 6 | 11 | GO:0042221 | biological_process | response to chemical | 3.00E-05 | 5 | 1681 |
Module722 | 6 | 12 | GO:0003006 | biological_process | developmental process involved in reproduction | 4.55E-05 | 4 | 750 |
Module722 | 6 | 13 | GO:0009733 | biological_process | response to auxin | 4.72E-05 | 3 | 229 |
Module722 | 6 | 14 | GO:0044702 | biological_process | single organism reproductive process | 5.15E-05 | 4 | 774 |
Module722 | 6 | 15 | GO:0009791 | biological_process | post-embryonic development | 6.23E-05 | 4 | 812 |
Module722 | 6 | 16 | GO:0009755 | biological_process | hormone-mediated signaling pathway | 9.55E-05 | 3 | 290 |
Module722 | 6 | 17 | GO:0009908 | biological_process | flower development | 0.000100513 | 3 | 295 |
Module722 | 6 | 18 | GO:0022414 | biological_process | reproductive process | 0.000100773 | 4 | 917 |
Module722 | 6 | 19 | GO:0000003 | biological_process | reproduction | 0.00010296 | 4 | 922 |
Module722 | 6 | 20 | GO:0048731 | biological_process | system development | 0.000115386 | 4 | 949 |
Module722 | 6 | 21 | GO:0032870 | biological_process | cellular response to hormone stimulus | 0.000123334 | 3 | 316 |
Module722 | 6 | 22 | GO:0071495 | biological_process | cellular response to endogenous stimulus | 0.000129227 | 3 | 321 |
Module722 | 6 | 23 | GO:0003677 | molecular_function | DNA binding | 0.000176095 | 4 | 1891 |
Module722 | 6 | 24 | GO:0071310 | biological_process | cellular response to organic substance | 0.000218295 | 3 | 383 |
Module722 | 6 | 25 | GO:0070887 | biological_process | cellular response to chemical stimulus | 0.000351789 | 3 | 450 |
Module722 | 6 | 26 | GO:0050789 | biological_process | regulation of biological process | 0.000353501 | 5 | 2751 |
Module722 | 6 | 27 | GO:2001141 | biological_process | regulation of RNA biosynthetic process | 0.000389684 | 4 | 1293 |
Module722 | 6 | 28 | GO:0006355 | biological_process | regulation of transcription, DNA-templated | 0.000389684 | 4 | 1293 |
Module722 | 6 | 29 | GO:1903506 | biological_process | regulation of nucleic acid-templated transcription | 0.000389684 | 4 | 1293 |
Module722 | 6 | 30 | GO:0051252 | biological_process | regulation of RNA metabolic process | 0.000402846 | 4 | 1304 |
Module722 | 6 | 31 | GO:0019219 | biological_process | regulation of nucleobase-containing compound metabolic process | 0.000439118 | 4 | 1333 |
Module722 | 6 | 32 | GO:0007275 | biological_process | multicellular organism development | 0.000457466 | 4 | 1347 |
Module722 | 6 | 33 | GO:0065007 | biological_process | biological regulation | 0.000481287 | 5 | 2926 |
Module722 | 6 | 34 | GO:0010556 | biological_process | regulation of macromolecule biosynthetic process | 0.000494443 | 4 | 1374 |
Module722 | 6 | 35 | GO:2000112 | biological_process | regulation of cellular macromolecule biosynthetic process | 0.000494443 | 4 | 1374 |
Module722 | 6 | 36 | GO:0044707 | biological_process | single-multicellular organism process | 0.000521754 | 4 | 1393 |
Module722 | 6 | 37 | GO:0048856 | biological_process | anatomical structure development | 0.000541072 | 4 | 1406 |
Module722 | 6 | 38 | GO:0031326 | biological_process | regulation of cellular biosynthetic process | 0.000542579 | 4 | 1407 |
Module722 | 6 | 39 | GO:0051171 | biological_process | regulation of nitrogen compound metabolic process | 0.000545603 | 4 | 1409 |
Module722 | 6 | 40 | GO:0010468 | biological_process | regulation of gene expression | 0.000553218 | 4 | 1414 |
Module722 | 6 | 41 | GO:0097659 | biological_process | nucleic acid-templated transcription | 0.000553218 | 4 | 1414 |
Module722 | 6 | 42 | GO:0006351 | biological_process | transcription, DNA-templated | 0.000553218 | 4 | 1414 |
Module722 | 6 | 43 | GO:0032774 | biological_process | RNA biosynthetic process | 0.000560911 | 4 | 1419 |
Module722 | 6 | 44 | GO:0009889 | biological_process | regulation of biosynthetic process | 0.000565565 | 4 | 1422 |
Module722 | 6 | 45 | GO:0032501 | biological_process | multicellular organismal process | 0.000680663 | 4 | 1491 |
Module722 | 6 | 46 | GO:0080090 | biological_process | regulation of primary metabolic process | 0.000747136 | 4 | 1527 |
Module722 | 6 | 47 | GO:0060255 | biological_process | regulation of macromolecule metabolic process | 0.000756732 | 4 | 1532 |
Module722 | 6 | 48 | GO:0044767 | biological_process | single-organism developmental process | 0.000768367 | 4 | 1538 |
Module722 | 6 | 49 | GO:0031323 | biological_process | regulation of cellular metabolic process | 0.000800038 | 4 | 1554 |
Module722 | 6 | 50 | GO:0032502 | biological_process | developmental process | 0.000859878 | 4 | 1583 |
Module722 | 6 | 51 | GO:0034654 | biological_process | nucleobase-containing compound biosynthetic process | 0.000894268 | 4 | 1599 |
Module722 | 6 | 52 | GO:0050896 | biological_process | response to stimulus | 0.001227238 | 5 | 3528 |
Module722 | 6 | 53 | GO:0007165 | biological_process | signal transduction | 0.001273693 | 3 | 697 |
Module722 | 6 | 54 | GO:0003676 | molecular_function | nucleic acid binding | 0.00130158 | 4 | 3117 |
Module722 | 6 | 55 | GO:0019222 | biological_process | regulation of metabolic process | 0.001302032 | 4 | 1761 |
Module722 | 6 | 56 | GO:0023052 | biological_process | signaling | 0.00132237 | 3 | 706 |
Module722 | 6 | 57 | GO:0044700 | biological_process | single organism signaling | 0.00132237 | 3 | 706 |
Module722 | 6 | 58 | GO:0018130 | biological_process | heterocycle biosynthetic process | 0.001429967 | 4 | 1804 |
Module722 | 6 | 59 | GO:0019438 | biological_process | aromatic compound biosynthetic process | 0.001470396 | 4 | 1817 |
Module722 | 6 | 60 | GO:0016070 | biological_process | RNA metabolic process | 0.001590053 | 4 | 1854 |
Module722 | 6 | 61 | GO:1901362 | biological_process | organic cyclic compound biosynthetic process | 0.00183574 | 4 | 1924 |
Module722 | 6 | 62 | GO:0007154 | biological_process | cell communication | 0.002373537 | 3 | 863 |
Module722 | 6 | 63 | GO:0005634 | cellular_component | nucleus | 0.002773837 | 4 | 2423 |
Module722 | 6 | 64 | GO:0090304 | biological_process | nucleic acid metabolic process | 0.003001195 | 4 | 2185 |
Module722 | 6 | 65 | GO:0005515 | molecular_function | protein binding | 0.003499723 | 4 | 3991 |
Module722 | 6 | 66 | GO:0050794 | biological_process | regulation of cellular process | 0.004176171 | 4 | 2381 |
Module722 | 6 | 67 | GO:0034645 | biological_process | cellular macromolecule biosynthetic process | 0.005088772 | 4 | 2507 |
Module722 | 6 | 68 | GO:0010467 | biological_process | gene expression | 0.005127726 | 4 | 2512 |
Module722 | 6 | 69 | GO:0044271 | biological_process | cellular nitrogen compound biosynthetic process | 0.005237946 | 4 | 2526 |
Module722 | 6 | 70 | GO:0009059 | biological_process | macromolecule biosynthetic process | 0.00525383 | 4 | 2528 |
Module722 | 6 | 71 | GO:0051716 | biological_process | cellular response to stimulus | 0.005421436 | 3 | 1149 |
Module722 | 6 | 72 | GO:0006139 | biological_process | nucleobase-containing compound metabolic process | 0.005823508 | 4 | 2597 |
Module722 | 6 | 73 | GO:0046483 | biological_process | heterocycle metabolic process | 0.008476518 | 4 | 2866 |
Module722 | 6 | 74 | GO:0006725 | biological_process | cellular aromatic compound metabolic process | 0.008969392 | 4 | 2909 |
Module722 | 6 | 75 | GO:1901360 | biological_process | organic cyclic compound metabolic process | 0.010067158 | 4 | 2999 |
Module722 | 6 | 76 | GO:0010229 | biological_process | inflorescence development | 0.011450825 | 1 | 31 |
Module722 | 6 | 77 | GO:0010029 | biological_process | regulation of seed germination | 0.015855136 | 1 | 43 |
Module722 | 6 | 78 | GO:1900140 | biological_process | regulation of seedling development | 0.016221452 | 1 | 44 |
Module722 | 6 | 79 | GO:0009735 | biological_process | response to cytokinin | 0.017685626 | 1 | 48 |
Module722 | 6 | 80 | GO:0034641 | biological_process | cellular nitrogen compound metabolic process | 0.018885389 | 4 | 3545 |
Module722 | 6 | 81 | GO:0044249 | biological_process | cellular biosynthetic process | 0.018905295 | 4 | 3546 |
Module722 | 6 | 82 | GO:1901576 | biological_process | organic substance biosynthetic process | 0.02012703 | 4 | 3606 |
Module722 | 6 | 83 | GO:0008283 | biological_process | cell proliferation | 0.021703117 | 1 | 59 |
Module722 | 6 | 84 | GO:0009058 | biological_process | biosynthetic process | 0.023516678 | 4 | 3760 |
Module722 | 6 | 85 | GO:1901363 | molecular_function | heterocyclic compound binding | 0.023977849 | 4 | 6456 |
Module722 | 6 | 86 | GO:0097159 | molecular_function | organic cyclic compound binding | 0.024052233 | 4 | 6461 |
Module722 | 6 | 87 | GO:0006807 | biological_process | nitrogen compound metabolic process | 0.026599246 | 4 | 3887 |
Module722 | 6 | 88 | GO:0009739 | biological_process | response to gibberellin | 0.028973965 | 1 | 79 |
Module722 | 6 | 89 | GO:0009845 | biological_process | seed germination | 0.030422933 | 1 | 83 |
Module722 | 6 | 90 | GO:0031347 | biological_process | regulation of defense response | 0.032231709 | 1 | 88 |
Module722 | 6 | 91 | GO:0090351 | biological_process | seedling development | 0.032954464 | 1 | 90 |
Module722 | 6 | 92 | GO:0080134 | biological_process | regulation of response to stress | 0.040158287 | 1 | 110 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
arftf34 | pza02619 | 0.0659 |
arftf34 | arftf30 | 0.0482 |
GRMZM2G096048 | arftf30 | 0.035 |
arftf30 | tcptf26 | 0.0355 |
arftf30 | arftf3 | 0.0552 |