This page contains information for Module742, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
GRMZM2G119933 | Module742 | AT1G51310 | AT1G51310 | transferases;tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferases | |||
GRMZM2G100116 | Module742 | AT4G03020 | AT4G03020 | transducin family protein / WD-40 repeat family protein | |||
GRMZM2G145029 | ippi2 | Module742 | AT5G16440 | IPP1 | isopentenyl diphosphate isomerase 1 | isopentenyl diphosphate isomerase 1 | |
GRMZM2G179454 | cmu2 | Module742 | AT5G10870 | CM2 | chorismate mutase 2 | chorismate mutase 2 | |
GRMZM5G869779 | fgp2 | Module742 | AT5G05980 | DFB | DHFS-FPGS homolog B | DHFS-FPGS homolog B | |
GRMZM2G159082 | Module742 |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module742 | 6 | 1 | GO:0004452 | molecular_function | isopentenyl-diphosphate delta-isomerase activity | 0.000914188 | 1 | 3 |
Module742 | 6 | 2 | GO:0046900 | biological_process | tetrahydrofolylpolyglutamate metabolic process | 0.001186899 | 1 | 4 |
Module742 | 6 | 3 | GO:0046901 | biological_process | tetrahydrofolylpolyglutamate biosynthetic process | 0.001186899 | 1 | 4 |
Module742 | 6 | 4 | GO:0008652 | biological_process | cellular amino acid biosynthetic process | 0.001380541 | 2 | 207 |
Module742 | 6 | 5 | GO:0004326 | molecular_function | tetrahydrofolylpolyglutamate synthase activity | 0.001523275 | 1 | 5 |
Module742 | 6 | 6 | GO:0004106 | molecular_function | chorismate mutase activity | 0.001523275 | 1 | 5 |
Module742 | 6 | 7 | GO:0046490 | biological_process | isopentenyl diphosphate metabolic process | 0.001779953 | 1 | 6 |
Module742 | 6 | 8 | GO:0009240 | biological_process | isopentenyl diphosphate biosynthetic process | 0.001779953 | 1 | 6 |
Module742 | 6 | 9 | GO:0016863 | molecular_function | intramolecular oxidoreductase activity, transposing C=C bonds | 0.002436349 | 1 | 8 |
Module742 | 6 | 10 | GO:0016853 | molecular_function | isomerase activity | 0.002806106 | 2 | 280 |
Module742 | 6 | 11 | GO:0044711 | biological_process | single-organism biosynthetic process | 0.002922792 | 3 | 1244 |
Module742 | 6 | 12 | GO:0010449 | biological_process | root meristem growth | 0.00385356 | 1 | 13 |
Module742 | 6 | 13 | GO:0046417 | biological_process | chorismate metabolic process | 0.004149526 | 1 | 14 |
Module742 | 6 | 14 | GO:0016783 | molecular_function | sulfurtransferase activity | 0.004260493 | 1 | 14 |
Module742 | 6 | 15 | GO:0009396 | biological_process | folic acid-containing compound biosynthetic process | 0.005332729 | 1 | 18 |
Module742 | 6 | 16 | GO:0006730 | biological_process | one-carbon metabolic process | 0.005332729 | 1 | 18 |
Module742 | 6 | 17 | GO:0042559 | biological_process | pteridine-containing compound biosynthetic process | 0.005923935 | 1 | 20 |
Module742 | 6 | 18 | GO:0006520 | biological_process | cellular amino acid metabolic process | 0.006136272 | 2 | 441 |
Module742 | 6 | 19 | GO:0016053 | biological_process | organic acid biosynthetic process | 0.006439413 | 2 | 452 |
Module742 | 6 | 20 | GO:0046394 | biological_process | carboxylic acid biosynthetic process | 0.006439413 | 2 | 452 |
Module742 | 6 | 21 | GO:0016782 | molecular_function | transferase activity, transferring sulfur-containing groups | 0.007294802 | 1 | 24 |
Module742 | 6 | 22 | GO:0006760 | biological_process | folic acid-containing compound metabolic process | 0.008581102 | 1 | 29 |
Module742 | 6 | 23 | GO:0042558 | biological_process | pteridine-containing compound metabolic process | 0.009170859 | 1 | 31 |
Module742 | 6 | 24 | GO:0044283 | biological_process | small molecule biosynthetic process | 0.009883238 | 2 | 563 |
Module742 | 6 | 25 | GO:0035266 | biological_process | meristem growth | 0.010055001 | 1 | 34 |
Module742 | 6 | 26 | GO:0042398 | biological_process | cellular modified amino acid biosynthetic process | 0.011821511 | 1 | 40 |
Module742 | 6 | 27 | GO:0048767 | biological_process | root hair elongation | 0.011821511 | 1 | 40 |
Module742 | 6 | 28 | GO:0016860 | molecular_function | intramolecular oxidoreductase activity | 0.014245645 | 1 | 47 |
Module742 | 6 | 29 | GO:0009073 | biological_process | aromatic amino acid family biosynthetic process | 0.015934173 | 1 | 54 |
Module742 | 6 | 30 | GO:0080147 | biological_process | root hair cell development | 0.016227443 | 1 | 55 |
Module742 | 6 | 31 | GO:0008033 | biological_process | tRNA processing | 0.017985683 | 1 | 61 |
Module742 | 6 | 32 | GO:0048764 | biological_process | trichoblast maturation | 0.019741566 | 1 | 67 |
Module742 | 6 | 33 | GO:0048765 | biological_process | root hair cell differentiation | 0.019741566 | 1 | 67 |
Module742 | 6 | 34 | GO:0048469 | biological_process | cell maturation | 0.020033984 | 1 | 68 |
Module742 | 6 | 35 | GO:0016114 | biological_process | terpenoid biosynthetic process | 0.020326337 | 1 | 69 |
Module742 | 6 | 36 | GO:0010054 | biological_process | trichoblast differentiation | 0.020326337 | 1 | 69 |
Module742 | 6 | 37 | GO:0043648 | biological_process | dicarboxylic acid metabolic process | 0.020618624 | 1 | 70 |
Module742 | 6 | 38 | GO:0008654 | biological_process | phospholipid biosynthetic process | 0.021203002 | 1 | 72 |
Module742 | 6 | 39 | GO:0016866 | molecular_function | intramolecular transferase activity | 0.021457132 | 1 | 71 |
Module742 | 6 | 40 | GO:0006575 | biological_process | cellular modified amino acid metabolic process | 0.021495093 | 1 | 73 |
Module742 | 6 | 41 | GO:0009072 | biological_process | aromatic amino acid family metabolic process | 0.0235379 | 1 | 80 |
Module742 | 6 | 42 | GO:0010053 | biological_process | root epidermal cell differentiation | 0.024120972 | 1 | 82 |
Module742 | 6 | 43 | GO:0090627 | biological_process | plant epidermal cell differentiation | 0.024703782 | 1 | 84 |
Module742 | 6 | 44 | GO:0019752 | biological_process | carboxylic acid metabolic process | 0.02535763 | 2 | 918 |
Module742 | 6 | 45 | GO:0043436 | biological_process | oxoacid metabolic process | 0.026206505 | 2 | 934 |
Module742 | 6 | 46 | GO:0006082 | biological_process | organic acid metabolic process | 0.026313493 | 2 | 936 |
Module742 | 6 | 47 | GO:0006721 | biological_process | terpenoid metabolic process | 0.026741561 | 1 | 91 |
Module742 | 6 | 48 | GO:0048731 | biological_process | system development | 0.027013656 | 2 | 949 |
Module742 | 6 | 49 | GO:0021700 | biological_process | developmental maturation | 0.02906654 | 1 | 99 |
Module742 | 6 | 50 | GO:0008299 | biological_process | isoprenoid biosynthetic process | 0.029356869 | 1 | 100 |
Module742 | 6 | 51 | GO:0009108 | biological_process | coenzyme biosynthetic process | 0.030807539 | 1 | 105 |
Module742 | 6 | 52 | GO:0016881 | molecular_function | acid-amino acid ligase activity | 0.031303949 | 1 | 104 |
Module742 | 6 | 53 | GO:0006725 | biological_process | cellular aromatic compound metabolic process | 0.033699315 | 3 | 2909 |
Module742 | 6 | 54 | GO:0034470 | biological_process | ncRNA processing | 0.033993288 | 1 | 116 |
Module742 | 6 | 55 | GO:0006720 | biological_process | isoprenoid metabolic process | 0.034860764 | 1 | 119 |
Module742 | 6 | 56 | GO:0048588 | biological_process | developmental cell growth | 0.034860764 | 1 | 119 |
Module742 | 6 | 57 | GO:1901360 | biological_process | organic cyclic compound metabolic process | 0.036705339 | 3 | 2999 |
Module742 | 6 | 58 | GO:0006399 | biological_process | tRNA metabolic process | 0.038036511 | 1 | 130 |
Module742 | 6 | 59 | GO:0048507 | biological_process | meristem development | 0.040341218 | 1 | 138 |
Module742 | 6 | 60 | GO:0010015 | biological_process | root morphogenesis | 0.042067028 | 1 | 144 |
Module742 | 6 | 61 | GO:0005829 | cellular_component | cytosol | 0.043062078 | 2 | 1321 |
Module742 | 6 | 62 | GO:0051188 | biological_process | cofactor biosynthetic process | 0.045224967 | 1 | 155 |
Module742 | 6 | 63 | GO:0090558 | biological_process | plant epidermis development | 0.046084867 | 1 | 158 |
Module742 | 6 | 64 | GO:0006644 | biological_process | phospholipid metabolic process | 0.046084867 | 1 | 158 |
Module742 | 6 | 65 | GO:1901607 | biological_process | alpha-amino acid biosynthetic process | 0.04665781 | 1 | 160 |
Module742 | 6 | 66 | GO:0016879 | molecular_function | ligase activity, forming carbon-nitrogen bonds | 0.048125278 | 1 | 161 |
Module742 | 6 | 67 | GO:1901566 | biological_process | organonitrogen compound biosynthetic process | 0.049945807 | 2 | 1315 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
GRMZM2G119933 | GRMZM2G100116 | 0.0437 |
GRMZM2G119933 | fgp2 | 0.035 |
GRMZM2G100116 | ippi2 | 0.0402 |
GRMZM2G100116 | cmu2 | 0.0357 |
fgp2 | GRMZM2G159082 | 0.0469 |