This page contains information for Module753, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
AC217947.4_FG002 | Module753 | AT4G30210 | ATR2 | P450 reductase 2 | P450 reductase 2 | ||
GRMZM2G142919 | Module753 | AT2G38060 | PHT4;2 | phosphate transporter 4;2 | phosphate transporter 4;2 | ||
GRMZM2G314652 | Module753 | AT3G06350 | MEE32 | MATERNAL EFFECT EMBRYO ARREST 32 | dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative | ||
GRMZM2G033799 | got5 | Module753 | AT2G22250 | AAT | aspartate aminotransferase | aspartate aminotransferase | |
GRMZM5G877500 | eps1 | Module753 | AT2G45300 | AT2G45300 | RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta | ||
GRMZM2G164562 | Module753 | AT1G48850 | EMB1144 | embryo defective 1144 | chorismate synthase, putative / 5-enolpyruvylshikimate-3-phosphate phospholyase, putative |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module753 | 6 | 1 | GO:0019632 | biological_process | shikimate metabolic process | 4.12E-09 | 3 | 9 |
Module753 | 6 | 2 | GO:0033587 | biological_process | shikimate biosynthetic process | 9.91E-07 | 2 | 4 |
Module753 | 6 | 3 | GO:0009073 | biological_process | aromatic amino acid family biosynthetic process | 1.21E-06 | 3 | 54 |
Module753 | 6 | 4 | GO:0009423 | biological_process | chorismate biosynthetic process | 2.48E-06 | 2 | 6 |
Module753 | 6 | 5 | GO:0009072 | biological_process | aromatic amino acid family metabolic process | 3.98E-06 | 3 | 80 |
Module753 | 6 | 6 | GO:0043650 | biological_process | dicarboxylic acid biosynthetic process | 1.29E-05 | 2 | 13 |
Module753 | 6 | 7 | GO:0046417 | biological_process | chorismate metabolic process | 1.50E-05 | 2 | 14 |
Module753 | 6 | 8 | GO:1901615 | biological_process | organic hydroxy compound metabolic process | 3.70E-05 | 3 | 168 |
Module753 | 6 | 9 | GO:0008652 | biological_process | cellular amino acid biosynthetic process | 6.91E-05 | 3 | 207 |
Module753 | 6 | 10 | GO:0009570 | cellular_component | chloroplast stroma | 0.00014814 | 4 | 607 |
Module753 | 6 | 11 | GO:0009532 | cellular_component | plastid stroma | 0.000162985 | 4 | 622 |
Module753 | 6 | 12 | GO:0019752 | biological_process | carboxylic acid metabolic process | 0.000287182 | 4 | 918 |
Module753 | 6 | 13 | GO:0043436 | biological_process | oxoacid metabolic process | 0.00030715 | 4 | 934 |
Module753 | 6 | 14 | GO:0006082 | biological_process | organic acid metabolic process | 0.000309716 | 4 | 936 |
Module753 | 6 | 15 | GO:0043648 | biological_process | dicarboxylic acid metabolic process | 0.000393638 | 2 | 70 |
Module753 | 6 | 16 | GO:0032787 | biological_process | monocarboxylic acid metabolic process | 0.000525903 | 3 | 411 |
Module753 | 6 | 17 | GO:0048037 | molecular_function | cofactor binding | 0.000593041 | 3 | 521 |
Module753 | 6 | 18 | GO:0006520 | biological_process | cellular amino acid metabolic process | 0.000646683 | 3 | 441 |
Module753 | 6 | 19 | GO:1901617 | biological_process | organic hydroxy compound biosynthetic process | 0.000694127 | 2 | 93 |
Module753 | 6 | 20 | GO:0016053 | biological_process | organic acid biosynthetic process | 0.000695101 | 3 | 452 |
Module753 | 6 | 21 | GO:0046394 | biological_process | carboxylic acid biosynthetic process | 0.000695101 | 3 | 452 |
Module753 | 6 | 22 | GO:0033853 | molecular_function | aspartate-prephenate aminotransferase activity | 0.000731417 | 1 | 2 |
Module753 | 6 | 23 | GO:0033854 | molecular_function | glutamate-prephenate aminotransferase activity | 0.000731417 | 1 | 2 |
Module753 | 6 | 24 | GO:0004107 | molecular_function | chorismate synthase activity | 0.000731417 | 1 | 2 |
Module753 | 6 | 25 | GO:0016835 | molecular_function | carbon-oxygen lyase activity | 0.000874081 | 2 | 127 |
Module753 | 6 | 26 | GO:0004764 | molecular_function | shikimate 3-dehydrogenase (NADP+) activity | 0.001096959 | 1 | 3 |
Module753 | 6 | 27 | GO:0003855 | molecular_function | 3-dehydroquinate dehydratase activity | 0.001096959 | 1 | 3 |
Module753 | 6 | 28 | GO:0044283 | biological_process | small molecule biosynthetic process | 0.001319705 | 3 | 563 |
Module753 | 6 | 29 | GO:0044434 | cellular_component | chloroplast part | 0.001571333 | 4 | 1117 |
Module753 | 6 | 30 | GO:0044435 | cellular_component | plastid part | 0.001670266 | 4 | 1135 |
Module753 | 6 | 31 | GO:0009536 | cellular_component | plastid | 0.001707918 | 5 | 2141 |
Module753 | 6 | 32 | GO:0044281 | biological_process | small molecule metabolic process | 0.001819911 | 4 | 1482 |
Module753 | 6 | 33 | GO:0003958 | molecular_function | NADPH-hemoprotein reductase activity | 0.001827708 | 1 | 5 |
Module753 | 6 | 34 | GO:0044763 | biological_process | single-organism cellular process | 0.002142117 | 6 | 4840 |
Module753 | 6 | 35 | GO:0016653 | molecular_function | oxidoreductase activity, acting on NAD(P)H, heme protein as acceptor | 0.002558011 | 1 | 7 |
Module753 | 6 | 36 | GO:0072330 | biological_process | monocarboxylic acid biosynthetic process | 0.00401764 | 2 | 226 |
Module753 | 6 | 37 | GO:0016829 | molecular_function | lyase activity | 0.005402732 | 2 | 320 |
Module753 | 6 | 38 | GO:0005315 | molecular_function | inorganic phosphate transmembrane transporter activity | 0.006202851 | 1 | 17 |
Module753 | 6 | 39 | GO:0009095 | biological_process | aromatic amino acid family biosynthetic process, prephenate pathway | 0.006661215 | 1 | 15 |
Module753 | 6 | 40 | GO:0050662 | molecular_function | coenzyme binding | 0.007091987 | 2 | 368 |
Module753 | 6 | 41 | GO:0044710 | biological_process | single-organism metabolic process | 0.008190526 | 5 | 3802 |
Module753 | 6 | 42 | GO:0044446 | cellular_component | intracellular organelle part | 0.009238054 | 5 | 3055 |
Module753 | 6 | 43 | GO:0044422 | cellular_component | organelle part | 0.009309102 | 5 | 3060 |
Module753 | 6 | 44 | GO:0044711 | biological_process | single-organism biosynthetic process | 0.012678427 | 3 | 1244 |
Module753 | 6 | 45 | GO:0016838 | molecular_function | carbon-oxygen lyase activity, acting on phosphates | 0.014182445 | 1 | 39 |
Module753 | 6 | 46 | GO:0010181 | molecular_function | FMN binding | 0.014543881 | 1 | 40 |
Module753 | 6 | 47 | GO:0009507 | cellular_component | chloroplast | 0.014749834 | 4 | 2032 |
Module753 | 6 | 48 | GO:1901566 | biological_process | organonitrogen compound biosynthetic process | 0.014789576 | 3 | 1315 |
Module753 | 6 | 49 | GO:0016769 | molecular_function | transferase activity, transferring nitrogenous groups | 0.017431399 | 1 | 48 |
Module753 | 6 | 50 | GO:0008483 | molecular_function | transaminase activity | 0.017431399 | 1 | 48 |
Module753 | 6 | 51 | GO:0044444 | cellular_component | cytoplasmic part | 0.018167886 | 6 | 5412 |
Module753 | 6 | 52 | GO:1901677 | molecular_function | phosphate transmembrane transporter activity | 0.018512398 | 1 | 51 |
Module753 | 6 | 53 | GO:0044699 | biological_process | single-organism process | 0.019877174 | 6 | 7015 |
Module753 | 6 | 54 | GO:0006725 | biological_process | cellular aromatic compound metabolic process | 0.022306404 | 4 | 2909 |
Module753 | 6 | 55 | GO:1901360 | biological_process | organic cyclic compound metabolic process | 0.024878232 | 4 | 2999 |
Module753 | 6 | 56 | GO:0050661 | molecular_function | NADP binding | 0.025335739 | 1 | 70 |
Module753 | 6 | 57 | GO:0016836 | molecular_function | hydro-lyase activity | 0.026409486 | 1 | 73 |
Module753 | 6 | 58 | GO:0005737 | cellular_component | cytoplasm | 0.030504884 | 6 | 5900 |
Module753 | 6 | 59 | GO:0006575 | biological_process | cellular modified amino acid metabolic process | 0.032071098 | 1 | 73 |
Module753 | 6 | 60 | GO:1901564 | biological_process | organonitrogen compound metabolic process | 0.033701862 | 3 | 1779 |
Module753 | 6 | 61 | GO:0009698 | biological_process | phenylpropanoid metabolic process | 0.033803344 | 1 | 77 |
Module753 | 6 | 62 | GO:0019438 | biological_process | aromatic compound biosynthetic process | 0.035661107 | 3 | 1817 |
Module753 | 6 | 63 | GO:0016651 | molecular_function | oxidoreductase activity, acting on NAD(P)H | 0.03638368 | 1 | 101 |
Module753 | 6 | 64 | GO:0043231 | cellular_component | intracellular membrane-bounded organelle | 0.03971031 | 6 | 6165 |
Module753 | 6 | 65 | GO:0043227 | cellular_component | membrane-bounded organelle | 0.039748989 | 6 | 6166 |
Module753 | 6 | 66 | GO:0016765 | molecular_function | transferase activity, transferring alkyl or aryl (other than methyl) groups | 0.039925189 | 1 | 111 |
Module753 | 6 | 67 | GO:1901362 | biological_process | organic cyclic compound biosynthetic process | 0.041521676 | 3 | 1924 |
Module753 | 6 | 68 | GO:0030170 | molecular_function | pyridoxal phosphate binding | 0.042397787 | 1 | 118 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
AC217947.4_FG002 | GRMZM2G142919 | 0.042 |
GRMZM2G142919 | eps1 | 0.0352 |
GRMZM2G314652 | got5 | 0.0371 |
got5 | eps1 | 0.0354 |
eps1 | GRMZM2G164562 | 0.0404 |