This page contains information for Module766, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
GRMZM2G338259 | arftf10 | Module766 | AT5G62000 | ARF2 | auxin response factor 2 | auxin response factor 2 | ARF |
GRMZM2G017187 | abi17 | Module766 | AT1G59750 | ARF1 | auxin response factor 1 | auxin response factor 1 | ARF |
GRMZM2G116557 | arftf25 | Module766 | AT5G62000 | ARF2 | auxin response factor 2 | auxin response factor 2 | ARF |
GRMZM2G378580 | arftf13 | Module766 | AT5G62000 | ARF2 | auxin response factor 2 | auxin response factor 2 | ARF |
GRMZM2G130018 | snrkII6 | Module766 | AT1G10940 | SNRK2.4 | SNF1-related protein kinase 2.4 | Protein kinase superfamily protein | |
GRMZM5G843748 | Module766 | AT2G22420 | AT2G22420 | Peroxidase superfamily protein |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module766 | 6 | 1 | GO:0009734 | biological_process | auxin-activated signaling pathway | 7.99E-08 | 4 | 117 |
Module766 | 6 | 2 | GO:0071365 | biological_process | cellular response to auxin stimulus | 9.46E-08 | 4 | 122 |
Module766 | 6 | 3 | GO:0010150 | biological_process | leaf senescence | 5.59E-07 | 3 | 42 |
Module766 | 6 | 4 | GO:0010260 | biological_process | organ senescence | 6.01E-07 | 3 | 43 |
Module766 | 6 | 5 | GO:0010047 | biological_process | fruit dehiscence | 9.91E-07 | 2 | 4 |
Module766 | 6 | 6 | GO:0009733 | biological_process | response to auxin | 1.19E-06 | 4 | 229 |
Module766 | 6 | 7 | GO:0008285 | biological_process | negative regulation of cell proliferation | 1.65E-06 | 2 | 5 |
Module766 | 6 | 8 | GO:0007568 | biological_process | aging | 1.66E-06 | 3 | 60 |
Module766 | 6 | 9 | GO:0009755 | biological_process | hormone-mediated signaling pathway | 3.05E-06 | 4 | 290 |
Module766 | 6 | 10 | GO:0032870 | biological_process | cellular response to hormone stimulus | 4.29E-06 | 4 | 316 |
Module766 | 6 | 11 | GO:0071495 | biological_process | cellular response to endogenous stimulus | 4.56E-06 | 4 | 321 |
Module766 | 6 | 12 | GO:0071310 | biological_process | cellular response to organic substance | 9.21E-06 | 4 | 383 |
Module766 | 6 | 13 | GO:0010227 | biological_process | floral organ abscission | 1.29E-05 | 2 | 13 |
Module766 | 6 | 14 | GO:0009900 | biological_process | dehiscence | 1.50E-05 | 2 | 14 |
Module766 | 6 | 15 | GO:0009838 | biological_process | abscission | 1.50E-05 | 2 | 14 |
Module766 | 6 | 16 | GO:0046983 | molecular_function | protein dimerization activity | 1.63E-05 | 4 | 538 |
Module766 | 6 | 17 | GO:0070887 | biological_process | cellular response to chemical stimulus | 1.74E-05 | 4 | 450 |
Module766 | 6 | 18 | GO:0048366 | biological_process | leaf development | 5.52E-05 | 3 | 192 |
Module766 | 6 | 19 | GO:0042127 | biological_process | regulation of cell proliferation | 6.67E-05 | 2 | 29 |
Module766 | 6 | 20 | GO:0007165 | biological_process | signal transduction | 9.79E-05 | 4 | 697 |
Module766 | 6 | 21 | GO:0048513 | biological_process | animal organ development | 9.82E-05 | 3 | 233 |
Module766 | 6 | 22 | GO:0023052 | biological_process | signaling | 0.000102946 | 4 | 706 |
Module766 | 6 | 23 | GO:0044700 | biological_process | single organism signaling | 0.000102946 | 4 | 706 |
Module766 | 6 | 24 | GO:0009911 | biological_process | positive regulation of flower development | 0.000115316 | 2 | 38 |
Module766 | 6 | 25 | GO:0048523 | biological_process | negative regulation of cellular process | 0.0001154 | 3 | 246 |
Module766 | 6 | 26 | GO:0048481 | biological_process | plant ovule development | 0.000141122 | 2 | 42 |
Module766 | 6 | 27 | GO:0035670 | biological_process | plant-type ovary development | 0.000141122 | 2 | 42 |
Module766 | 6 | 28 | GO:0048827 | biological_process | phyllome development | 0.000158906 | 3 | 274 |
Module766 | 6 | 29 | GO:0009725 | biological_process | response to hormone | 0.000159871 | 4 | 790 |
Module766 | 6 | 30 | GO:2000243 | biological_process | positive regulation of reproductive process | 0.000169507 | 2 | 46 |
Module766 | 6 | 31 | GO:0009719 | biological_process | response to endogenous stimulus | 0.000192987 | 4 | 829 |
Module766 | 6 | 32 | GO:0048440 | biological_process | carpel development | 0.000225369 | 2 | 53 |
Module766 | 6 | 33 | GO:0007154 | biological_process | cell communication | 0.000225754 | 4 | 863 |
Module766 | 6 | 34 | GO:0048582 | biological_process | positive regulation of post-embryonic development | 0.000260815 | 2 | 57 |
Module766 | 6 | 35 | GO:0008283 | biological_process | cell proliferation | 0.000279497 | 2 | 59 |
Module766 | 6 | 36 | GO:0051240 | biological_process | positive regulation of multicellular organismal process | 0.000308717 | 2 | 62 |
Module766 | 6 | 37 | GO:0048467 | biological_process | gynoecium development | 0.000308717 | 2 | 62 |
Module766 | 6 | 38 | GO:0050896 | biological_process | response to stimulus | 0.000320953 | 6 | 3528 |
Module766 | 6 | 39 | GO:0010033 | biological_process | response to organic substance | 0.000343134 | 4 | 961 |
Module766 | 6 | 40 | GO:0048609 | biological_process | multicellular organismal reproductive process | 0.000360601 | 2 | 67 |
Module766 | 6 | 41 | GO:0051094 | biological_process | positive regulation of developmental process | 0.000371455 | 2 | 68 |
Module766 | 6 | 42 | GO:0032504 | biological_process | multicellular organism reproduction | 0.000416456 | 2 | 72 |
Module766 | 6 | 43 | GO:0048519 | biological_process | negative regulation of biological process | 0.00068167 | 3 | 449 |
Module766 | 6 | 44 | GO:0051716 | biological_process | cellular response to stimulus | 0.000685462 | 4 | 1149 |
Module766 | 6 | 45 | GO:0048367 | biological_process | shoot system development | 0.000880289 | 3 | 490 |
Module766 | 6 | 46 | GO:0009909 | biological_process | regulation of flower development | 0.000952004 | 2 | 109 |
Module766 | 6 | 47 | GO:0048438 | biological_process | floral whorl development | 0.001022681 | 2 | 113 |
Module766 | 6 | 48 | GO:0099402 | biological_process | plant organ development | 0.001058848 | 3 | 522 |
Module766 | 6 | 49 | GO:2001141 | biological_process | regulation of RNA biosynthetic process | 0.001079872 | 4 | 1293 |
Module766 | 6 | 50 | GO:0006355 | biological_process | regulation of transcription, DNA-templated | 0.001079872 | 4 | 1293 |
Module766 | 6 | 51 | GO:1903506 | biological_process | regulation of nucleic acid-templated transcription | 0.001079872 | 4 | 1293 |
Module766 | 6 | 52 | GO:0051252 | biological_process | regulation of RNA metabolic process | 0.001115561 | 4 | 1304 |
Module766 | 6 | 53 | GO:0048831 | biological_process | regulation of shoot system development | 0.001210169 | 2 | 123 |
Module766 | 6 | 54 | GO:0019219 | biological_process | regulation of nucleobase-containing compound metabolic process | 0.001213754 | 4 | 1333 |
Module766 | 6 | 55 | GO:0048437 | biological_process | floral organ development | 0.001350548 | 2 | 130 |
Module766 | 6 | 56 | GO:0010556 | biological_process | regulation of macromolecule biosynthetic process | 0.001363093 | 4 | 1374 |
Module766 | 6 | 57 | GO:2000112 | biological_process | regulation of cellular macromolecule biosynthetic process | 0.001363093 | 4 | 1374 |
Module766 | 6 | 58 | GO:0031326 | biological_process | regulation of cellular biosynthetic process | 0.00149263 | 4 | 1407 |
Module766 | 6 | 59 | GO:0051171 | biological_process | regulation of nitrogen compound metabolic process | 0.001500757 | 4 | 1409 |
Module766 | 6 | 60 | GO:0010468 | biological_process | regulation of gene expression | 0.001521214 | 4 | 1414 |
Module766 | 6 | 61 | GO:0097659 | biological_process | nucleic acid-templated transcription | 0.001521214 | 4 | 1414 |
Module766 | 6 | 62 | GO:0006351 | biological_process | transcription, DNA-templated | 0.001521214 | 4 | 1414 |
Module766 | 6 | 63 | GO:0032774 | biological_process | RNA biosynthetic process | 0.001541872 | 4 | 1419 |
Module766 | 6 | 64 | GO:0009889 | biological_process | regulation of biosynthetic process | 0.001554364 | 4 | 1422 |
Module766 | 6 | 65 | GO:2000241 | biological_process | regulation of reproductive process | 0.001792784 | 2 | 150 |
Module766 | 6 | 66 | GO:0080090 | biological_process | regulation of primary metabolic process | 0.002039523 | 4 | 1527 |
Module766 | 6 | 67 | GO:0060255 | biological_process | regulation of macromolecule metabolic process | 0.002065051 | 4 | 1532 |
Module766 | 6 | 68 | GO:0003677 | molecular_function | DNA binding | 0.002178448 | 4 | 1891 |
Module766 | 6 | 69 | GO:0031323 | biological_process | regulation of cellular metabolic process | 0.002180121 | 4 | 1554 |
Module766 | 6 | 70 | GO:0034654 | biological_process | nucleobase-containing compound biosynthetic process | 0.002429795 | 4 | 1599 |
Module766 | 6 | 71 | GO:0048580 | biological_process | regulation of post-embryonic development | 0.002917131 | 2 | 192 |
Module766 | 6 | 72 | GO:0042221 | biological_process | response to chemical | 0.002936735 | 4 | 1681 |
Module766 | 6 | 73 | GO:0005634 | cellular_component | nucleus | 0.003087368 | 5 | 2423 |
Module766 | 6 | 74 | GO:0019222 | biological_process | regulation of metabolic process | 0.003500508 | 4 | 1761 |
Module766 | 6 | 75 | GO:1901363 | molecular_function | heterocyclic compound binding | 0.003710824 | 6 | 6456 |
Module766 | 6 | 76 | GO:0097159 | molecular_function | organic cyclic compound binding | 0.003728108 | 6 | 6461 |
Module766 | 6 | 77 | GO:0018130 | biological_process | heterocycle biosynthetic process | 0.003833618 | 4 | 1804 |
Module766 | 6 | 78 | GO:0019438 | biological_process | aromatic compound biosynthetic process | 0.003938636 | 4 | 1817 |
Module766 | 6 | 79 | GO:0016070 | biological_process | RNA metabolic process | 0.004248783 | 4 | 1854 |
Module766 | 6 | 80 | GO:1901362 | biological_process | organic cyclic compound biosynthetic process | 0.004882648 | 4 | 1924 |
Module766 | 6 | 81 | GO:2000026 | biological_process | regulation of multicellular organismal development | 0.005444385 | 2 | 264 |
Module766 | 6 | 82 | GO:0048731 | biological_process | system development | 0.005924475 | 3 | 949 |
Module766 | 6 | 83 | GO:0051239 | biological_process | regulation of multicellular organismal process | 0.006191337 | 2 | 282 |
Module766 | 6 | 84 | GO:0009908 | biological_process | flower development | 0.006758823 | 2 | 295 |
Module766 | 6 | 85 | GO:0090567 | biological_process | reproductive shoot system development | 0.007349589 | 2 | 308 |
Module766 | 6 | 86 | GO:0048518 | biological_process | positive regulation of biological process | 0.007630048 | 2 | 314 |
Module766 | 6 | 87 | GO:0050793 | biological_process | regulation of developmental process | 0.007677268 | 2 | 315 |
Module766 | 6 | 88 | GO:0090304 | biological_process | nucleic acid metabolic process | 0.007844662 | 4 | 2185 |
Module766 | 6 | 89 | GO:0050794 | biological_process | regulation of cellular process | 0.010772094 | 4 | 2381 |
Module766 | 6 | 90 | GO:0034645 | biological_process | cellular macromolecule biosynthetic process | 0.013013592 | 4 | 2507 |
Module766 | 6 | 91 | GO:0010467 | biological_process | gene expression | 0.013108714 | 4 | 2512 |
Module766 | 6 | 92 | GO:0044271 | biological_process | cellular nitrogen compound biosynthetic process | 0.013377626 | 4 | 2526 |
Module766 | 6 | 93 | GO:0009059 | biological_process | macromolecule biosynthetic process | 0.013416353 | 4 | 2528 |
Module766 | 6 | 94 | GO:0003676 | molecular_function | nucleic acid binding | 0.014063049 | 4 | 3117 |
Module766 | 6 | 95 | GO:0006139 | biological_process | nucleobase-containing compound metabolic process | 0.014800678 | 4 | 2597 |
Module766 | 6 | 96 | GO:0007275 | biological_process | multicellular organism development | 0.015806202 | 3 | 1347 |
Module766 | 6 | 97 | GO:0044707 | biological_process | single-multicellular organism process | 0.01733972 | 3 | 1393 |
Module766 | 6 | 98 | GO:0048856 | biological_process | anatomical structure development | 0.017788671 | 3 | 1406 |
Module766 | 6 | 99 | GO:0050789 | biological_process | regulation of biological process | 0.018241482 | 4 | 2751 |
Module766 | 6 | 100 | GO:0032501 | biological_process | multicellular organismal process | 0.020895579 | 3 | 1491 |
Module766 | 6 | 101 | GO:0046483 | biological_process | heterocycle metabolic process | 0.021144355 | 4 | 2866 |
Module766 | 6 | 102 | GO:0006725 | biological_process | cellular aromatic compound metabolic process | 0.022306404 | 4 | 2909 |
Module766 | 6 | 103 | GO:0044767 | biological_process | single-organism developmental process | 0.022742869 | 3 | 1538 |
Module766 | 6 | 104 | GO:0065007 | biological_process | biological regulation | 0.022777603 | 4 | 2926 |
Module766 | 6 | 105 | GO:0032502 | biological_process | developmental process | 0.024599103 | 3 | 1583 |
Module766 | 6 | 106 | GO:1901360 | biological_process | organic cyclic compound metabolic process | 0.024878232 | 4 | 2999 |
Module766 | 6 | 107 | GO:0044260 | biological_process | cellular macromolecule metabolic process | 0.028095226 | 5 | 4961 |
Module766 | 6 | 108 | GO:0061458 | biological_process | reproductive system development | 0.028189133 | 2 | 622 |
Module766 | 6 | 109 | GO:0048608 | biological_process | reproductive structure development | 0.028189133 | 2 | 622 |
Module766 | 6 | 110 | GO:0045892 | biological_process | negative regulation of transcription, DNA-templated | 0.029467876 | 1 | 67 |
Module766 | 6 | 111 | GO:1903507 | biological_process | negative regulation of nucleic acid-templated transcription | 0.029467876 | 1 | 67 |
Module766 | 6 | 112 | GO:1902679 | biological_process | negative regulation of RNA biosynthetic process | 0.029467876 | 1 | 67 |
Module766 | 6 | 113 | GO:0051253 | biological_process | negative regulation of RNA metabolic process | 0.029902151 | 1 | 68 |
Module766 | 6 | 114 | GO:0005515 | molecular_function | protein binding | 0.034144264 | 4 | 3991 |
Module766 | 6 | 115 | GO:0045934 | biological_process | negative regulation of nucleobase-containing compound metabolic process | 0.035965018 | 1 | 82 |
Module766 | 6 | 116 | GO:0003006 | biological_process | developmental process involved in reproduction | 0.039949416 | 2 | 750 |
Module766 | 6 | 117 | GO:0044702 | biological_process | single organism reproductive process | 0.042342553 | 2 | 774 |
Module766 | 6 | 118 | GO:0043170 | biological_process | macromolecule metabolic process | 0.044146345 | 5 | 5482 |
Module766 | 6 | 119 | GO:0034641 | biological_process | cellular nitrogen compound metabolic process | 0.044874376 | 4 | 3545 |
Module766 | 6 | 120 | GO:0044249 | biological_process | cellular biosynthetic process | 0.044918392 | 4 | 3546 |
Module766 | 6 | 121 | GO:0010558 | biological_process | negative regulation of macromolecule biosynthetic process | 0.045856883 | 1 | 105 |
Module766 | 6 | 122 | GO:2000113 | biological_process | negative regulation of cellular macromolecule biosynthetic process | 0.045856883 | 1 | 105 |
Module766 | 6 | 123 | GO:0009791 | biological_process | post-embryonic development | 0.046247514 | 2 | 812 |
Module766 | 6 | 124 | GO:1901576 | biological_process | organic substance biosynthetic process | 0.047611528 | 4 | 3606 |
Module766 | 6 | 125 | GO:0031327 | biological_process | negative regulation of cellular biosynthetic process | 0.048423411 | 1 | 111 |
Module766 | 6 | 126 | GO:0009890 | biological_process | negative regulation of biosynthetic process | 0.049704516 | 1 | 114 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
arftf10 | abi17 | 0.0403 |
arftf10 | arftf25 | 0.0454 |
arftf25 | arftf13 | 0.0457 |
arftf13 | snrkII6 | 0.036 |
arftf13 | GRMZM5G843748 | 0.0361 |