This page contains information for Module833, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
GRMZM2G040890 | Module833 | AT5G57710 | AT5G57710 | Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein | |||
GRMZM2G081816 | bhlh25 | Module833 | AT3G50330 | HEC2 | HECATE 2 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | bHLH |
GRMZM2G024948 | abi16 | Module833 | AT2G46870 | NGA1 | NGATHA1 | AP2/B3-like transcriptional factor family protein | ABI3VP1 |
GRMZM2G148074 | hb78 | Module833 | AT3G60390 | HAT3 | homeobox-leucine zipper protein 3 | homeobox-leucine zipper protein 3 | HB |
GRMZM2G164341 | bhlh92 | Module833 | AT3G21330 | AT3G21330 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | bHLH |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module833 | 5 | 1 | GO:0046983 | molecular_function | protein dimerization activity | 0.000136916 | 3 | 538 |
Module833 | 5 | 2 | GO:0009641 | biological_process | shade avoidance | 0.001631926 | 1 | 11 |
Module833 | 5 | 3 | GO:0010582 | biological_process | floral meristem determinacy | 0.002076766 | 1 | 14 |
Module833 | 5 | 4 | GO:0010022 | biological_process | meristem determinacy | 0.002225023 | 1 | 15 |
Module833 | 5 | 5 | GO:0043621 | molecular_function | protein self-association | 0.003652964 | 1 | 15 |
Module833 | 5 | 6 | GO:0003677 | molecular_function | DNA binding | 0.005590644 | 3 | 1891 |
Module833 | 5 | 7 | GO:0010218 | biological_process | response to far red light | 0.00607586 | 1 | 41 |
Module833 | 5 | 8 | GO:0009735 | biological_process | response to cytokinin | 0.007111352 | 1 | 48 |
Module833 | 5 | 9 | GO:0008283 | biological_process | cell proliferation | 0.008737463 | 1 | 59 |
Module833 | 5 | 10 | GO:0048467 | biological_process | gynoecium development | 0.009180716 | 1 | 62 |
Module833 | 5 | 11 | GO:2001141 | biological_process | regulation of RNA biosynthetic process | 0.009199649 | 2 | 1293 |
Module833 | 5 | 12 | GO:0006355 | biological_process | regulation of transcription, DNA-templated | 0.009199649 | 2 | 1293 |
Module833 | 5 | 13 | GO:1903506 | biological_process | regulation of nucleic acid-templated transcription | 0.009199649 | 2 | 1293 |
Module833 | 5 | 14 | GO:0051252 | biological_process | regulation of RNA metabolic process | 0.009356905 | 2 | 1304 |
Module833 | 5 | 15 | GO:0010073 | biological_process | meristem maintenance | 0.009771567 | 1 | 66 |
Module833 | 5 | 16 | GO:0019219 | biological_process | regulation of nucleobase-containing compound metabolic process | 0.009777878 | 2 | 1333 |
Module833 | 5 | 17 | GO:0045892 | biological_process | negative regulation of transcription, DNA-templated | 0.009919252 | 1 | 67 |
Module833 | 5 | 18 | GO:1903507 | biological_process | negative regulation of nucleic acid-templated transcription | 0.009919252 | 1 | 67 |
Module833 | 5 | 19 | GO:1902679 | biological_process | negative regulation of RNA biosynthetic process | 0.009919252 | 1 | 67 |
Module833 | 5 | 20 | GO:0051253 | biological_process | negative regulation of RNA metabolic process | 0.010066926 | 1 | 68 |
Module833 | 5 | 21 | GO:0010556 | biological_process | regulation of macromolecule biosynthetic process | 0.01038885 | 2 | 1374 |
Module833 | 5 | 22 | GO:2000112 | biological_process | regulation of cellular macromolecule biosynthetic process | 0.01038885 | 2 | 1374 |
Module833 | 5 | 23 | GO:0031326 | biological_process | regulation of cellular biosynthetic process | 0.010894057 | 2 | 1407 |
Module833 | 5 | 24 | GO:0051171 | biological_process | regulation of nitrogen compound metabolic process | 0.010925061 | 2 | 1409 |
Module833 | 5 | 25 | GO:0010468 | biological_process | regulation of gene expression | 0.011002764 | 2 | 1414 |
Module833 | 5 | 26 | GO:0097659 | biological_process | nucleic acid-templated transcription | 0.011002764 | 2 | 1414 |
Module833 | 5 | 27 | GO:0006351 | biological_process | transcription, DNA-templated | 0.011002764 | 2 | 1414 |
Module833 | 5 | 28 | GO:0032774 | biological_process | RNA biosynthetic process | 0.011080742 | 2 | 1419 |
Module833 | 5 | 29 | GO:0009889 | biological_process | regulation of biosynthetic process | 0.011127661 | 2 | 1422 |
Module833 | 5 | 30 | GO:0045934 | biological_process | negative regulation of nucleobase-containing compound metabolic process | 0.012133206 | 1 | 82 |
Module833 | 5 | 31 | GO:0080090 | biological_process | regulation of primary metabolic process | 0.012832279 | 2 | 1527 |
Module833 | 5 | 32 | GO:0060255 | biological_process | regulation of macromolecule metabolic process | 0.01291648 | 2 | 1532 |
Module833 | 5 | 33 | GO:0031323 | biological_process | regulation of cellular metabolic process | 0.013290236 | 2 | 1554 |
Module833 | 5 | 34 | GO:0034654 | biological_process | nucleobase-containing compound biosynthetic process | 0.01407134 | 2 | 1599 |
Module833 | 5 | 35 | GO:0010558 | biological_process | negative regulation of macromolecule biosynthetic process | 0.015523123 | 1 | 105 |
Module833 | 5 | 36 | GO:2000113 | biological_process | negative regulation of cellular macromolecule biosynthetic process | 0.015523123 | 1 | 105 |
Module833 | 5 | 37 | GO:0031327 | biological_process | negative regulation of cellular biosynthetic process | 0.016406491 | 1 | 111 |
Module833 | 5 | 38 | GO:0048438 | biological_process | floral whorl development | 0.016700859 | 1 | 113 |
Module833 | 5 | 39 | GO:0009890 | biological_process | negative regulation of biosynthetic process | 0.016848027 | 1 | 114 |
Module833 | 5 | 40 | GO:0010016 | biological_process | shoot system morphogenesis | 0.016848027 | 1 | 114 |
Module833 | 5 | 41 | GO:0051172 | biological_process | negative regulation of nitrogen compound metabolic process | 0.016995183 | 1 | 115 |
Module833 | 5 | 42 | GO:0019222 | biological_process | regulation of metabolic process | 0.017067985 | 2 | 1761 |
Module833 | 5 | 43 | GO:0009734 | biological_process | auxin-activated signaling pathway | 0.017289463 | 1 | 117 |
Module833 | 5 | 44 | GO:0018130 | biological_process | heterocycle biosynthetic process | 0.017911934 | 2 | 1804 |
Module833 | 5 | 45 | GO:0071365 | biological_process | cellular response to auxin stimulus | 0.01802497 | 1 | 122 |
Module833 | 5 | 46 | GO:0019438 | biological_process | aromatic compound biosynthetic process | 0.018171091 | 2 | 1817 |
Module833 | 5 | 47 | GO:0010629 | biological_process | negative regulation of gene expression | 0.018760201 | 1 | 127 |
Module833 | 5 | 48 | GO:0016070 | biological_process | RNA metabolic process | 0.018918878 | 2 | 1854 |
Module833 | 5 | 49 | GO:0042803 | molecular_function | protein homodimerization activity | 0.01912662 | 1 | 79 |
Module833 | 5 | 50 | GO:1901362 | biological_process | organic cyclic compound biosynthetic process | 0.020374857 | 2 | 1924 |
Module833 | 5 | 51 | GO:0048507 | biological_process | meristem development | 0.020376741 | 1 | 138 |
Module833 | 5 | 52 | GO:0009639 | biological_process | response to red or far red light | 0.020964243 | 1 | 142 |
Module833 | 5 | 53 | GO:0003676 | molecular_function | nucleic acid binding | 0.023516208 | 3 | 3117 |
Module833 | 5 | 54 | GO:0031324 | biological_process | negative regulation of cellular metabolic process | 0.023899111 | 1 | 162 |
Module833 | 5 | 55 | GO:0010605 | biological_process | negative regulation of macromolecule metabolic process | 0.024632139 | 1 | 167 |
Module833 | 5 | 56 | GO:0009826 | biological_process | unidimensional cell growth | 0.025657917 | 1 | 174 |
Module833 | 5 | 57 | GO:0090304 | biological_process | nucleic acid metabolic process | 0.026279331 | 2 | 2185 |
Module833 | 5 | 58 | GO:0060560 | biological_process | developmental growth involved in morphogenesis | 0.029609431 | 1 | 201 |
Module833 | 5 | 59 | GO:0050794 | biological_process | regulation of cellular process | 0.031206609 | 2 | 2381 |
Module833 | 5 | 60 | GO:0009733 | biological_process | response to auxin | 0.033698818 | 1 | 229 |
Module833 | 5 | 61 | GO:0000902 | biological_process | cell morphogenesis | 0.033990586 | 1 | 231 |
Module833 | 5 | 62 | GO:0048513 | biological_process | animal organ development | 0.034282311 | 1 | 233 |
Module833 | 5 | 63 | GO:0034645 | biological_process | cellular macromolecule biosynthetic process | 0.034597572 | 2 | 2507 |
Module833 | 5 | 64 | GO:0010467 | biological_process | gene expression | 0.034735741 | 2 | 2512 |
Module833 | 5 | 65 | GO:0044271 | biological_process | cellular nitrogen compound biosynthetic process | 0.03512408 | 2 | 2526 |
Module833 | 5 | 66 | GO:0009059 | biological_process | macromolecule biosynthetic process | 0.035179733 | 2 | 2528 |
Module833 | 5 | 67 | GO:0048523 | biological_process | negative regulation of cellular process | 0.036177447 | 1 | 246 |
Module833 | 5 | 68 | GO:0048589 | biological_process | developmental growth | 0.036468841 | 1 | 248 |
Module833 | 5 | 69 | GO:0006139 | biological_process | nucleobase-containing compound metabolic process | 0.037126744 | 2 | 2597 |
Module833 | 5 | 70 | GO:0032989 | biological_process | cellular component morphogenesis | 0.037197134 | 1 | 253 |
Module833 | 5 | 71 | GO:0016049 | biological_process | cell growth | 0.038070721 | 1 | 259 |
Module833 | 5 | 72 | GO:0022622 | biological_process | root system development | 0.040979817 | 1 | 279 |
Module833 | 5 | 73 | GO:0048364 | biological_process | root development | 0.040979817 | 1 | 279 |
Module833 | 5 | 74 | GO:0050789 | biological_process | regulation of biological process | 0.041661366 | 2 | 2751 |
Module833 | 5 | 75 | GO:0009755 | biological_process | hormone-mediated signaling pathway | 0.042577941 | 1 | 290 |
Module833 | 5 | 76 | GO:0009892 | biological_process | negative regulation of metabolic process | 0.042577941 | 1 | 290 |
Module833 | 5 | 77 | GO:0009908 | biological_process | flower development | 0.043303921 | 1 | 295 |
Module833 | 5 | 78 | GO:0010154 | biological_process | fruit development | 0.04431983 | 1 | 302 |
Module833 | 5 | 79 | GO:0042802 | molecular_function | identical protein binding | 0.044828859 | 1 | 187 |
Module833 | 5 | 80 | GO:0090567 | biological_process | reproductive shoot system development | 0.045190179 | 1 | 308 |
Module833 | 5 | 81 | GO:0046483 | biological_process | heterocycle metabolic process | 0.045217967 | 2 | 2866 |
Module833 | 5 | 82 | GO:0032870 | biological_process | cellular response to hormone stimulus | 0.046350029 | 1 | 316 |
Module833 | 5 | 83 | GO:0006725 | biological_process | cellular aromatic compound metabolic process | 0.046585241 | 2 | 2909 |
Module833 | 5 | 84 | GO:0005515 | molecular_function | protein binding | 0.047072498 | 3 | 3991 |
Module833 | 5 | 85 | GO:0071495 | biological_process | cellular response to endogenous stimulus | 0.047074577 | 1 | 321 |
Module833 | 5 | 86 | GO:0065007 | biological_process | biological regulation | 0.047131408 | 2 | 2926 |
Module833 | 5 | 87 | GO:0040007 | biological_process | growth | 0.048522846 | 1 | 331 |
Module833 | 5 | 88 | GO:1901360 | biological_process | organic cyclic compound metabolic process | 0.049512895 | 2 | 2999 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
GRMZM2G040890 | bhlh92 | 0.0374 |
bhlh25 | abi16 | 0.0366 |
bhlh25 | bhlh92 | 0.0539 |
abi16 | hb78 | 0.0359 |
abi16 | bhlh92 | 0.0363 |