This page contains information for Module859, including a list of the genes within the module, the Gene Ontology enrichement analysis results, and a heatmap showing these genes' tissue specific expression patterns. Also included is a subnetwork for the genes within the module. For this subnetwork, a SIF file (check here for details of SIF file format) is provided for downloding, which can be opened and viewed within the Cytoscape software. Alternatively, the subnetwork can be also can be opened and visualized by clicking the link provided below.
Maize Gene | Symbol | Moule No. | Arabidopsis Homologue | Arabidopsis Homologue Symbol | Arabidopsis Homologue Name | Arabidopsis Homologue Description | Arabidopsis Homologue TF_Family |
---|---|---|---|---|---|---|---|
GRMZM2G065083 | phi1 | Module859 | AT5G42740 | AT5G42740 | Sugar isomerase (SIS) family protein | ||
GRMZM2G088064 | alt4 | Module859 | AT1G17290 | AlaAT1 | alanine aminotransferas | alanine aminotransferas | |
GRMZM5G828630 | Module859 | AT1G72330 | ALAAT2 | alanine aminotransferase 2 | alanine aminotransferase 2 | ||
GRMZM5G875238 | sps1 | Module859 | AT1G04920 | SPS3F | sucrose phosphate synthase 3F | sucrose phosphate synthase 3F | |
GRMZM6G477257 | Module859 | AT5G42740 | AT5G42740 | Sugar isomerase (SIS) family protein |
Module No. | Number of genes within the module | GO_Rank | GO ID | GO catogery | GO term | pValue | Number of genes with the GO within the module | Number of genes with the GO within the genome (background set) |
---|---|---|---|---|---|---|---|---|
Module859 | 5 | 1 | GO:0004347 | molecular_function | glucose-6-phosphate isomerase activity | 4.46E-07 | 2 | 5 |
Module859 | 5 | 2 | GO:0006094 | biological_process | gluconeogenesis | 6.01E-06 | 2 | 14 |
Module859 | 5 | 3 | GO:0019319 | biological_process | hexose biosynthetic process | 1.01E-05 | 2 | 18 |
Module859 | 5 | 4 | GO:0016051 | biological_process | carbohydrate biosynthetic process | 1.84E-05 | 3 | 226 |
Module859 | 5 | 5 | GO:0016861 | molecular_function | intramolecular oxidoreductase activity, interconverting aldoses and ketoses | 2.50E-05 | 2 | 34 |
Module859 | 5 | 6 | GO:0046364 | biological_process | monosaccharide biosynthetic process | 2.87E-05 | 2 | 30 |
Module859 | 5 | 7 | GO:0044712 | biological_process | single-organism catabolic process | 3.96E-05 | 3 | 292 |
Module859 | 5 | 8 | GO:0016860 | molecular_function | intramolecular oxidoreductase activity | 4.80E-05 | 2 | 47 |
Module859 | 5 | 9 | GO:0006006 | biological_process | glucose metabolic process | 4.88E-05 | 2 | 39 |
Module859 | 5 | 10 | GO:0019318 | biological_process | hexose metabolic process | 0.000186961 | 2 | 76 |
Module859 | 5 | 11 | GO:0044723 | biological_process | single-organism carbohydrate metabolic process | 0.000216926 | 3 | 516 |
Module859 | 5 | 12 | GO:0006096 | biological_process | glycolytic process | 0.000217729 | 2 | 82 |
Module859 | 5 | 13 | GO:0009185 | biological_process | ribonucleoside diphosphate metabolic process | 0.000217729 | 2 | 82 |
Module859 | 5 | 14 | GO:0009179 | biological_process | purine ribonucleoside diphosphate metabolic process | 0.000217729 | 2 | 82 |
Module859 | 5 | 15 | GO:0009135 | biological_process | purine nucleoside diphosphate metabolic process | 0.000217729 | 2 | 82 |
Module859 | 5 | 16 | GO:0006757 | biological_process | ATP generation from ADP | 0.000217729 | 2 | 82 |
Module859 | 5 | 17 | GO:0046031 | biological_process | ADP metabolic process | 0.000217729 | 2 | 82 |
Module859 | 5 | 18 | GO:0006165 | biological_process | nucleoside diphosphate phosphorylation | 0.000268234 | 2 | 91 |
Module859 | 5 | 19 | GO:0006090 | biological_process | pyruvate metabolic process | 0.000286227 | 2 | 94 |
Module859 | 5 | 20 | GO:0009132 | biological_process | nucleoside diphosphate metabolic process | 0.000292353 | 2 | 95 |
Module859 | 5 | 21 | GO:0044724 | biological_process | single-organism carbohydrate catabolic process | 0.000337036 | 2 | 102 |
Module859 | 5 | 22 | GO:1901575 | biological_process | organic substance catabolic process | 0.000343058 | 3 | 602 |
Module859 | 5 | 23 | GO:0046939 | biological_process | nucleotide phosphorylation | 0.000343676 | 2 | 103 |
Module859 | 5 | 24 | GO:0005996 | biological_process | monosaccharide metabolic process | 0.0003991 | 2 | 111 |
Module859 | 5 | 25 | GO:0009056 | biological_process | catabolic process | 0.000430801 | 3 | 650 |
Module859 | 5 | 26 | GO:0046496 | biological_process | nicotinamide nucleotide metabolic process | 0.000572586 | 2 | 133 |
Module859 | 5 | 27 | GO:0019362 | biological_process | pyridine nucleotide metabolic process | 0.000589885 | 2 | 135 |
Module859 | 5 | 28 | GO:0016052 | biological_process | carbohydrate catabolic process | 0.000643305 | 2 | 141 |
Module859 | 5 | 29 | GO:0072524 | biological_process | pyridine-containing compound metabolic process | 0.00065243 | 2 | 142 |
Module859 | 5 | 30 | GO:0006733 | biological_process | oxidoreduction coenzyme metabolic process | 0.000661618 | 2 | 143 |
Module859 | 5 | 31 | GO:0047635 | molecular_function | alanine-oxo-acid transaminase activity | 0.000731395 | 1 | 3 |
Module859 | 5 | 32 | GO:0004021 | molecular_function | L-alanine:2-oxoglutarate aminotransferase activity | 0.000731395 | 1 | 3 |
Module859 | 5 | 33 | GO:0046034 | biological_process | ATP metabolic process | 0.000966629 | 2 | 173 |
Module859 | 5 | 34 | GO:0009144 | biological_process | purine nucleoside triphosphate metabolic process | 0.001069166 | 2 | 182 |
Module859 | 5 | 35 | GO:0009205 | biological_process | purine ribonucleoside triphosphate metabolic process | 0.001069166 | 2 | 182 |
Module859 | 5 | 36 | GO:0009199 | biological_process | ribonucleoside triphosphate metabolic process | 0.001092641 | 2 | 184 |
Module859 | 5 | 37 | GO:0009141 | biological_process | nucleoside triphosphate metabolic process | 0.001128323 | 2 | 187 |
Module859 | 5 | 38 | GO:0019481 | biological_process | L-alanine catabolic process, by transamination | 0.001186899 | 1 | 4 |
Module859 | 5 | 39 | GO:0042851 | biological_process | L-alanine metabolic process | 0.001186899 | 1 | 4 |
Module859 | 5 | 40 | GO:0042853 | biological_process | L-alanine catabolic process | 0.001186899 | 1 | 4 |
Module859 | 5 | 41 | GO:0009080 | biological_process | pyruvate family amino acid catabolic process | 0.001186899 | 1 | 4 |
Module859 | 5 | 42 | GO:0009078 | biological_process | pyruvate family amino acid metabolic process | 0.001186899 | 1 | 4 |
Module859 | 5 | 43 | GO:0006522 | biological_process | alanine metabolic process | 0.001186899 | 1 | 4 |
Module859 | 5 | 44 | GO:0006524 | biological_process | alanine catabolic process | 0.001186899 | 1 | 4 |
Module859 | 5 | 45 | GO:0019752 | biological_process | carboxylic acid metabolic process | 0.001196402 | 3 | 918 |
Module859 | 5 | 46 | GO:0009167 | biological_process | purine ribonucleoside monophosphate metabolic process | 0.001201371 | 2 | 193 |
Module859 | 5 | 47 | GO:0009126 | biological_process | purine nucleoside monophosphate metabolic process | 0.001201371 | 2 | 193 |
Module859 | 5 | 48 | GO:0046524 | molecular_function | sucrose-phosphate synthase activity | 0.001218769 | 1 | 5 |
Module859 | 5 | 49 | GO:0043436 | biological_process | oxoacid metabolic process | 0.001258943 | 3 | 934 |
Module859 | 5 | 50 | GO:0006082 | biological_process | organic acid metabolic process | 0.001266908 | 3 | 936 |
Module859 | 5 | 51 | GO:0009161 | biological_process | ribonucleoside monophosphate metabolic process | 0.001315152 | 2 | 202 |
Module859 | 5 | 52 | GO:0005975 | biological_process | carbohydrate metabolic process | 0.001340077 | 3 | 954 |
Module859 | 5 | 53 | GO:0009123 | biological_process | nucleoside monophosphate metabolic process | 0.001354199 | 2 | 205 |
Module859 | 5 | 54 | GO:0009150 | biological_process | purine ribonucleotide metabolic process | 0.001686661 | 2 | 229 |
Module859 | 5 | 55 | GO:0046128 | biological_process | purine ribonucleoside metabolic process | 0.001701286 | 2 | 230 |
Module859 | 5 | 56 | GO:0016853 | molecular_function | isomerase activity | 0.001702852 | 2 | 280 |
Module859 | 5 | 57 | GO:0042278 | biological_process | purine nucleoside metabolic process | 0.001715973 | 2 | 231 |
Module859 | 5 | 58 | GO:0006163 | biological_process | purine nucleotide metabolic process | 0.001820506 | 2 | 238 |
Module859 | 5 | 59 | GO:0009259 | biological_process | ribonucleotide metabolic process | 0.001835685 | 2 | 239 |
Module859 | 5 | 60 | GO:0006732 | biological_process | coenzyme metabolic process | 0.001912504 | 2 | 244 |
Module859 | 5 | 61 | GO:0009119 | biological_process | ribonucleoside metabolic process | 0.001959332 | 2 | 247 |
Module859 | 5 | 62 | GO:0009116 | biological_process | nucleoside metabolic process | 0.002218389 | 2 | 263 |
Module859 | 5 | 63 | GO:0019693 | biological_process | ribose phosphate metabolic process | 0.002319567 | 2 | 269 |
Module859 | 5 | 64 | GO:0072521 | biological_process | purine-containing compound metabolic process | 0.002336643 | 2 | 270 |
Module859 | 5 | 65 | GO:0005986 | biological_process | sucrose biosynthetic process | 0.002372742 | 1 | 8 |
Module859 | 5 | 66 | GO:1901657 | biological_process | glycosyl compound metabolic process | 0.002582095 | 2 | 284 |
Module859 | 5 | 67 | GO:0044711 | biological_process | single-organism biosynthetic process | 0.002922792 | 3 | 1244 |
Module859 | 5 | 68 | GO:0051186 | biological_process | cofactor metabolic process | 0.003267688 | 2 | 320 |
Module859 | 5 | 69 | GO:0009117 | biological_process | nucleotide metabolic process | 0.003471954 | 2 | 330 |
Module859 | 5 | 70 | GO:0006753 | biological_process | nucleoside phosphate metabolic process | 0.003639669 | 2 | 338 |
Module859 | 5 | 71 | GO:0006091 | biological_process | generation of precursor metabolites and energy | 0.003660901 | 2 | 339 |
Module859 | 5 | 72 | GO:0055086 | biological_process | nucleobase-containing small molecule metabolic process | 0.004725718 | 2 | 386 |
Module859 | 5 | 73 | GO:0044281 | biological_process | small molecule metabolic process | 0.004873316 | 3 | 1482 |
Module859 | 5 | 74 | GO:0032787 | biological_process | monocarboxylic acid metabolic process | 0.005345057 | 2 | 411 |
Module859 | 5 | 75 | GO:0046686 | biological_process | response to cadmium ion | 0.005920186 | 2 | 433 |
Module859 | 5 | 76 | GO:0009058 | biological_process | biosynthetic process | 0.006053513 | 4 | 3760 |
Module859 | 5 | 77 | GO:0044710 | biological_process | single-organism metabolic process | 0.006328667 | 4 | 3802 |
Module859 | 5 | 78 | GO:0001666 | biological_process | response to hypoxia | 0.007400797 | 1 | 25 |
Module859 | 5 | 79 | GO:1901564 | biological_process | organonitrogen compound metabolic process | 0.008280546 | 3 | 1779 |
Module859 | 5 | 80 | GO:0036293 | biological_process | response to decreased oxygen levels | 0.008286124 | 1 | 28 |
Module859 | 5 | 81 | GO:0010038 | biological_process | response to metal ion | 0.00843505 | 2 | 519 |
Module859 | 5 | 82 | GO:1901135 | biological_process | carbohydrate derivative metabolic process | 0.008498527 | 2 | 521 |
Module859 | 5 | 83 | GO:0070482 | biological_process | response to oxygen levels | 0.008581102 | 1 | 29 |
Module859 | 5 | 84 | GO:0019637 | biological_process | organophosphate metabolic process | 0.009112751 | 2 | 540 |
Module859 | 5 | 85 | GO:0044283 | biological_process | small molecule biosynthetic process | 0.009883238 | 2 | 563 |
Module859 | 5 | 86 | GO:0005985 | biological_process | sucrose metabolic process | 0.010938552 | 1 | 37 |
Module859 | 5 | 87 | GO:0016769 | molecular_function | transferase activity, transferring nitrogenous groups | 0.011654251 | 1 | 48 |
Module859 | 5 | 88 | GO:0008483 | molecular_function | transaminase activity | 0.011654251 | 1 | 48 |
Module859 | 5 | 89 | GO:0046351 | biological_process | disaccharide biosynthetic process | 0.011821511 | 1 | 40 |
Module859 | 5 | 90 | GO:0009817 | biological_process | defense response to fungus, incompatible interaction | 0.012703879 | 1 | 43 |
Module859 | 5 | 91 | GO:0009312 | biological_process | oligosaccharide biosynthetic process | 0.01387945 | 1 | 47 |
Module859 | 5 | 92 | GO:1901606 | biological_process | alpha-amino acid catabolic process | 0.014466842 | 1 | 49 |
Module859 | 5 | 93 | GO:0009063 | biological_process | cellular amino acid catabolic process | 0.015347437 | 1 | 52 |
Module859 | 5 | 94 | GO:0044763 | biological_process | single-organism cellular process | 0.016626173 | 4 | 4840 |
Module859 | 5 | 95 | GO:0035251 | molecular_function | UDP-glucosyltransferase activity | 0.020808048 | 1 | 86 |
Module859 | 5 | 96 | GO:0010035 | biological_process | response to inorganic substance | 0.020866775 | 2 | 829 |
Module859 | 5 | 97 | GO:0005984 | biological_process | disaccharide metabolic process | 0.021495093 | 1 | 73 |
Module859 | 5 | 98 | GO:0046527 | molecular_function | glucosyltransferase activity | 0.023685466 | 1 | 98 |
Module859 | 5 | 99 | GO:0016054 | biological_process | organic acid catabolic process | 0.024703782 | 1 | 84 |
Module859 | 5 | 100 | GO:0046395 | biological_process | carboxylic acid catabolic process | 0.024703782 | 1 | 84 |
Module859 | 5 | 101 | GO:0009311 | biological_process | oligosaccharide metabolic process | 0.026159665 | 1 | 89 |
Module859 | 5 | 102 | GO:0030170 | molecular_function | pyridoxal phosphate binding | 0.028467064 | 1 | 118 |
Module859 | 5 | 103 | GO:0044282 | biological_process | small molecule catabolic process | 0.03167716 | 1 | 108 |
Module859 | 5 | 104 | GO:1901565 | biological_process | organonitrogen compound catabolic process | 0.033125227 | 1 | 113 |
Module859 | 5 | 105 | GO:0009814 | biological_process | defense response, incompatible interaction | 0.034282511 | 1 | 117 |
Module859 | 5 | 106 | GO:0050832 | biological_process | defense response to fungus | 0.041492017 | 1 | 142 |
Module859 | 5 | 107 | GO:0008194 | molecular_function | UDP-glycosyltransferase activity | 0.042942509 | 1 | 179 |
Gene A | Gene B | Partial correlation coefficient |
---|---|---|
phi1 | alt4 | 0.0374 |
phi1 | GRMZM5G828630 | 0.0399 |
phi1 | GRMZM6G477257 | 0.0747 |
alt4 | GRMZM5G828630 | 0.0987 |
GRMZM5G828630 | sps1 | 0.0357 |
GRMZM5G828630 | GRMZM6G477257 | 0.0358 |