Yun Xu (徐云)

Dr. Yun Xu

Associate Professor of Department of Computer Science and Technology
University of Science and Technology of China(USTC)

Address：Depart. of Computer,USTC,P.O.Box 4, Hefei,Anhui,230027,P.R.China
Phone: (+86-551)3602441(o)
Fax: (+86-551)3601013
Email: xuyun@ustc.edu.cn
Web: http://staff.ustc.edu.cn/~xuyun/

Teaching

• Spring 2008: Parallel Computing, Parallel Algorithms(for postgraduate) and Multi-Core Computing(for postgraduate of SSE)

• Fall 2007: Design and Analysis of Algorithms(for postgraduate of SSE), Foundation of Algorithms

• Spring 2007: Parallel Computing, Parallel Algorithms(for postgraduate) and Advanced Database(at SuZhou,China)

• Fall 2006: Design and Analysis of Algorithms(for SSE), Foundation of Algorithms

• Guest Lectures Summer 2006: Parallel Algorithms(at ShenZhen University,China)

• Spring 2006: Paralle Algorithms(for postgraduate)

Research

• Parallel Algorithms

• Bioinformatics

My Students

• Current Graduate Students:

  2005: Zhihao Wang(王志浩)，Zhihui Hu(胡智慧)，Yan Luo(罗兖)

  2006: Hong Zhang(张弘)，Linbin Yu(余林彬), Wei Bao(鲍微)，He Huang(黄河)，Yan Li(李燕)

  2007: Yiming Lei(雷一鸣)，Mingzhi Shao(邵明芝)

  2008: Pengfei Qiu(邱鹏飞)

  　

• Gone but not forgotten:

  2005: Tao Mao(毛涛)，Zilin Hu(胡自林)

  2006: Binfeng Yan(鄢冰峰)，Zhili Chen(陈至立)

  2007: Kunpeng Zhang(张坤鹏)，Haiyang Wang(王海洋)

  　

Papers Publications:

   Journal Papers

• Yun Xu, Zhihao Wang, Yuzhong Zhao, Changjiang Jin, Xinjiao Gao, Yu Xue, Xuebiao Yao. Proteome-wide Analysis of Amino Acid Absence in Composition and Plasticity. Oxford Journals of Protein Engineering Design & Selection. Submitted

• Yun Xu, Bingfeng Yan, Guoliang Chen. Core Management in Multicast and Its Algorithms. Chinese Journal of Computer Research and Development. 2007, Accepted(In Chinese)

• Kunpeng Zhang, Yun Xu, Guoliang Chen. PECB: Prediction of Enzyme Catalytic Residues Based on Naïve Bayes Classification. Int. J. of Bioinformatics Research and Application. 2007, Accepted

• Yuzhong Zhao, Yun Xu, Qiangfeng Zhang, Guoliang Chen. An Overview of the Haplotype Problems and Algorithms. Frontiers of Computer Science in China. 2007, Vol.1, No3 : 272-282

• Yuqing Miao, Guoliang Chen, Yun Xu. New Algorithm of Mining Frequent Closed Patterns in Gene Expression Datasets. Journal of University of Science and Technology of China. 2007, Vol.37, No.9:1080-1087. (In Chinese)

• Zhang, Qiangfeng; Xu, Yun; Chen, Guoliang; Che, Haoyang. Haplotyping and Haplotype Frequency Estimates on Trio Genotype Data. Chinese Journal of Software. 2007, Vol.18, No.9:2090-2099

• Haiyang Wang, Yun Xu, Daolun Li and Detang Lu. Marching Cube’s Modification Method in Reservior Simulation Model. Chinese Journal of Computer Engineering and Application. 2007, 43(4) : 204-206. (In Chinese)

• Bingfeng Yan, Yun Xu, Yingyu Wan. Core Selection Algorithm with Minimum Cost in Multicast. Chinese Journal of Computer Applications and Software. 2007, 24(8):6-7,40. (In Chinese)

• Qiangfeng Zhang, Yuzhong Zhao, Guoliang Chen, Yun Xu. Estimate haplotype frequencies in pedigrees. BMC Bioinformatics.2006, 7 (Suppl 4):S5

• Zilin Hu, Yun Xu, Tao Mao. Benefit Optimization-based Resource Scheduling in Grid Environment. Chinese Juornal of Computer Engineering and Applications. 2005, Vol.41, No.7:69-70,205. (in Chinese)

• Tao Mao, Yun Xu, Zilin Hu. A Grid Resource Discovery Mechanism Based on Gossip Protocol. Chinese Juornal of Computer Engineering and Applications. 2005, Vol.41, No.14:133-137. (in Chinese)

• Shouhong Wan, Yun Xu. Design and Implementation of Data Structure MCAI Courseware Based on Internet. Chinese Juornal of Microcomputer Development. 2005, Vol.15, No.5:1-3,133. (in Chinese)

• Qing Pu, Yun Xu, Shouhong Wan, Xiaoli Lin. Research and Implementation of Animation Technology on Distance Teaching Courseware. Chinese Journal of Application Research of Computers. 2004, Vol.21, No.2:144-146. (In Chinese)

• Xianchao Zhang, Yun Xu, Guoliang Chen. Practical Implementation of the Arithmetic Fourier Transform. Chinese Journal of Electronics & Information Technology. 2004, Vol.26, No.6:935-939. (In Chinese)

• Qing Pu, Yun Xu. Implementation of Interactive 3D Facial Animation with Cult3D Technology. Chinese Journal of Computer Aided Design & Computer Graphics.2004. Vol.16, No.3:382-384. (In Chinese)

• Yun Xu, Guoliang Chen, Qiangfeng Zhang, Jun Gu. Efficiency Analysis of Asynchronic Parallelization of Randomized Algorithms, Chinese Journal of Software. 2003, Vol.14, No.5:871-876. (In Chinese)

• Yun Xu, Guoliang Chen, Guoyi Zhang. A Modified DP Algorithm for Solving Hard SAT Problems. Journal of University of Science and Technology of China. 2002, Vol.32, No.3:358-362. (In Chinese)

• Guoliang Chen, Xing Xie, Yun Xu, Jun Gu. Designing Restart Strategy for Randomized Algorithms and Its Application in Solving the TSP. Chinese Journal of Computers. 2002, Vol.25, No.5:514-519. (In Chinese)

• Yun Xu, Guoliang Chen, Yinlong Xu, Jun Gu. O(m^2) Time Randomized Algorithms for SAT Problem. Chinese Journal of Computers. 2001, Vol.24, No.11:1136-1141. (In Chinese)

   Conference Papers

• He Huang, Yun Xu, Yu-e Sun, Liusheng Huang. Cluster-Based Load Balancing Multi-path Routing Protocol in Wireless Sensor Networks. WCICA'08, Accepted

• Yun Xu, Zhihao Wang, Yuzhong Zhao and Yu Xue. A New Alignment Algorithm to Identify Definitions Corresponding to Abbreviations in Biomedical Text. 2008 Workshop on Knowledge Discovery and Data mining, Adelaide, Australia, 23-24, January, 2008

• Z. H. Hu, H. Leung and Y. Xu. Stroke Correspondence Based on Graph Matching for Detecting Stroke Production Errors in Chinese Character Handwriting. 8th Pacific-Rim Conference on Multimedia (PCM), 2007, p734-743

• Yun Xu, Kunpeng Zhang, Guoliang Chen.  Prediction of Enzyme Catalytic Residues Based on Naive Bayes Classification. In Proceeding of Workshop on Intelligent Computing & Bioinformatics of CAS(WICB’06), ISBN 7-312-02020-8/Q.51, page 35-38, Hefei, China, Nov. 2006

• Qiangfeng Zhang, Yun Xu, Guoliang Chen and Haoyang Che. Maximum-Likelihood Estimation of Haplotype Frequencies in Trio Pedigrees. Proceeding of the 2006 International Multi-Symposiums in Computer and Computational Sciences (IMSCCS'06), page 35-39, Hangzhou, July. 2006

• Kunpeng Zhang, Yun Xu, Yifei Shen and Guoliang Chen. Using a Neural Networking Method to Predict the Protein Phosphorylation Sites with Specific Kinase. In Proceeding of Third International Symposium on Neural Networks(ISNN 2006) Part III, page 682-689. Lecture Notes in Computer Science 3973 Springer 2006, ISBN 3-540-34482-9 Cheng Du, China, July. 2006

Grants

Link

• personal homepage:

• others: Google

      Since March 16, 2007